GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

Cacao

Jump to: navigation, search
GO:0052106quorum sensing involved in interaction with hostPMID:9139920IMP: Inferred from Mutant Phenotype P
This annotation made on page: VIBAN:VANI
By: Dbilling (group Team Green Machine) on 2013-09-25 21:21:50 CDT.




You must be logged in to challenge this annotation.

Entry TypeChallenging User,GroupTime/DateChallenge ReasonPoints/Assessment
ChallengeRoosheel,
Team I got Krebs
2013-11-15 13:35:39 CST

Better GO term would be GO:1901336 lactone biosynthetic process, instead of positive regulation of homoserine biosynthetic synthesis from my previous challenge

5
ChallengeRoosheel,
Team I got Krebs
2013-11-14 22:25:25 CST

Please disregard my earlier challenge:

Figure 2B is actually a better example to explain the GO term I chose.

The figure shows the DM21 mutant(VanI mutant), in well 2, characterized with the absence a white halo. The white halo is indicative of AHL synthesis.

Evidence code should be IMP

GO term should still be GO ID: 1901712, positive regulation of homoserine biosynthetic process, is the best fitting GO term as there is not GO term for regulation of AHL-biosynthesis.

0
ChallengeRoosheel,
Team I got Krebs
2013-11-14 22:12:08 CST

GO ID: 1901712, positive regulation of homoserine biosynthetic process, is the best fitting GO term as there is not GO term for regulation of AHL-biosynthesis.

Figure 3, shows the HPLC analysis of the ODHL alone, ODHL produced by V. anguillarum NB10 and from E. coli expressing the VanI gene, the graphs are fairly identical

Evidence is IDA

0
ChallengeRoosheel,
Team I got Krebs
2013-11-13 23:37:19 CST

Better GO ID would be GO: 0010699: cell-cell signaling involved in quorum sensing

0
ChallengeDbilling,
Team Green Machine
2013-11-02 12:58:19 CDT

go term should be GO:0007165

0
ChallengeDsbarnard,
Team Loony Toons
2013-10-18 11:35:06 CDT

s/b GO:0010467 Gene expression

0
Private
Assessment
Suzialeksander2014-01-07 19:56:50 CSTYou need to be an instructor to view these notes.Updated by Instructor
Protein
Publication
Qualifier
Go term
Evidence
With/From
Notes
Unique/Original
Private
Assessment
JimHu2013-11-15 14:32:21 CSTYou need to be an instructor to view these notes.Corrected Through Challenges
Protein
Publication
Qualifier
Go term
Evidence
With/From
Notes
Unique/Original
Public
Assessment
DanielRenfro2013-11-15 13:35:39 CST

This annotation has been flagged because it has been edited since last assessment

Flagged
Public
Assessment
JimHu2013-11-15 13:04:50 CST

Homoserine biosynthetic process ends with the production of homoserine.

Requires Changes
Protein
Publication
Qualifier
Go term
Evidence
With/From
Notes
Unique/Original
Public
Assessment
DanielRenfro2013-11-14 22:25:25 CST

This annotation has been flagged because it has been edited since last assessment

Flagged
Public
Assessment
DanielRenfro2013-11-14 22:12:08 CST

This annotation has been flagged because it has been edited since last assessment

Flagged
Private
Assessment
JimHu2013-11-14 19:05:12 CSTYou need to be an instructor to view these notes.Requires Changes
Protein
Publication
Qualifier
Go term
Evidence
With/From
Notes
Unique/Original
Public
Assessment
DanielRenfro2013-11-13 23:37:19 CST

This annotation has been flagged because it has been edited since last assessment

Flagged
Private
Assessment
Suzialeksander2013-11-05 20:32:17 CSTYou need to be an instructor to view these notes.Requires Changes
Public
Assessment
DanielRenfro2013-11-02 12:58:19 CDT

This annotation has been flagged because it has been edited since last assessment

Flagged
Private
Assessment
JimHu2013-10-22 19:50:39 CDTYou need to be an instructor to view these notes.Requires Changes
Protein
Publication
Qualifier
Go term
Evidence
With/From
Notes
Unique/Original
Public
Assessment
DanielRenfro2013-10-18 11:35:06 CDT

This annotation has been flagged because it has been edited since last assessment

Flagged
Private
Assessment
Suzialeksander2013-10-15 19:44:46 CDTYou need to be an instructor to view these notes.Requires Changes
Protein
Publication
Qualifier
Go term
Evidence
With/From
Notes
Unique/Original