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GO:0008716D-alanine-D-alanine ligase activityPMID:8981985IDA: Inferred from Direct Assay F
This annotation made on page: ENTFC:VANA
By: Steven.V.Ly (group Team Spartan) on 2016-02-23 13:48:21 CST.




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Entry TypeChallenging User,GroupTime/DateChallenge ReasonPoints/Assessment
ChallengeZach.Bailey,
Team Not Very Creative
2016-02-23 20:32:12 CST

There is no figure or table in the paper that shows VanA has ligase activity.

2
Private
Assessment
Suzialeksander2016-06-13 13:49:44 CDTYou need to be an instructor to view these notes.Unacceptable
Public
Assessment
JimHu2016-03-08 14:37:07 CST

I marked the paper as acceptable because there are functional inferences that are allowable in it.

But as noted in the previous assessment changing the annotation to a valid one for this protein will require a different paper. The authors are using the activity to measure VanA. You can't use that to say that VanA has the activity because it would be a circular argument.

Requires Changes
Publication
Go term
Public
Assessment
Ebcaraway2016-03-01 20:53:55 CST

Hi!

This paper is rough because many of the things that it seems like you could annotate to are 'response to' terms which you can't annotate. VanA is, in fact, a ligase, but there are no experiments here in the paper that show that. You need to find the primary source paper that shows the function of this protein. Try googling your GO term and the name of your protein and I you'll be set. Good luck! Also, when you do your next annotation, please make sure to include the figure you are talking about in your notes.

Unacceptable
Protein
Publication
Go term
Notes