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Cacao

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GO:0005737cytoplasmPMID:19151183IDA: Inferred from Direct Assay C
This annotation made on page: LISMO:CSPB
By: Enas.Alareef (group Team Alpha) on 2016-02-22 21:23:46 CST.




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Entry TypeChallenging User,GroupTime/DateChallenge ReasonPoints/Assessment
ChallengeEnas.Alareef,
Team Alpha		2016-03-29 18:00:02 CDT

I did change this annotation different times but I don't know why it does not change here while if I check the table it is change.

0
ChallengeMadeline.J.Arneson,
Team The Jackson 5		2016-03-23 11:46:57 CDT

Ignore the previous one. Try GO:0006355 for the GOID

0
ChallengeMadeline.J.Arneson,
Team The Jackson 5		2016-03-23 11:43:49 CDT

Try GO:0003677 for the GOID

0
ChallengeEnas.Alareef,
Team Alpha		2016-03-09 09:58:40 CST

To improve this annotation some changes need to be make on go Id and Go term. Also should include figure proved the notes and the evidence code should change to inferred from mutant.

0
ChallengeKaylamichbrown,
Team MIA		2016-03-01 13:22:37 CST

I think a better go term would be GO:0030307 positive regulation of cell growth and the notes should include Figure 2.

0
ChallengeMadeline.J.Arneson,
Team The Jackson 5		2016-02-24 12:39:00 CST

You need to include a figure in the notes section.

1
Private
Assessment		Suzialeksander2016-05-03 16:34:48 CDTYou need to be an instructor to view these notes.Unacceptable
✗ Go term
✗ Evidence
Public
Assessment		DanielRenfro2016-04-14 22:45:54 CDT

This annotation has been flagged because it has been edited since last assessment

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0043620 regulation of DNA-templated transcription in response to stress PMID:19151183 IMP: Inferred from Mutant Phenotype P fig 2F Growth kinetics of ΔcspB, ΔcspD, and ΔcspBD at 4°C in DM. The results represent the means (± standard deviations) from duplicates of three independent experimental runs. complete
CACAO 11312
on LISMO:CSPB
Flagged
Private
Assessment		Suzialeksander2016-04-13 17:22:47 CDTYou need to be an instructor to view these notes.Requires Changes
✗ Go term
✔ Unique/Original
Private
Assessment		Suzialeksander2016-04-12 20:44:55 CDTYou need to be an instructor to view these notes.Unacceptable
✗ Unique/Original
Public
Assessment		DanielRenfro2016-03-29 18:00:02 CDT

This annotation has been flagged because it has been challenged since last assessment

Flagged
Private
Assessment		Suzialeksander2016-03-29 16:53:41 CDTYou need to be an instructor to view these notes.Requires Changes
✗ Go term
✗ Evidence
✗ Notes
Public
Assessment		Suzialeksander2016-03-29 16:35:59 CDT

The challenge on 2016-03-09 09:58:40 CST WOULD have gotten points for the EC had the change not already been made. You can see the current form in the History tab, or the protein page itself. The annotation at the top of this page is just the annotation when it was first made- it doesn't include any of the changes that might have been made since it was created.

Flagged
Public
Assessment		DanielRenfro2016-03-23 14:54:37 CDT

This annotation has been flagged because it has been edited since last assessment

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0006355 regulation of transcription, DNA-templated PMID:19151183 IMP: Inferred from Mutant Phenotype P fig 2F Growth kinetics of ΔcspB, ΔcspD, and ΔcspBD at 4°C in DM. The results represent the means (± standard deviations) from duplicates of three independent experimental runs. complete
CACAO 11312
on LISMO:CSPB
Flagged
Public
Assessment		DanielRenfro2016-03-23 14:54:04 CDT

This annotation has been flagged because it has been edited since last assessment

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0006355 regulation of transcription, DNA-templated PMID:19151183 IMP: Inferred from Mutant Phenotype P fig 2F Growth kinetics of ΔcspB, ΔcspD, and ΔcspBD at 4°C in DM. The results represent the means (± standard deviations) from duplicates of three independent experimental runs. complete
CACAO 11312
on LISMO:CSPB
Flagged
Public
Assessment		DanielRenfro2016-03-23 11:46:57 CDT

This annotation has been flagged because it has been challenged since last assessment

Flagged
Public
Assessment		DanielRenfro2016-03-23 11:43:49 CDT

This annotation has been flagged because it has been challenged since last assessment

Flagged
Public
Assessment		DanielRenfro2016-03-23 11:25:06 CDT

This annotation has been flagged because it has been edited since last assessment

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005737 cytoplasm PMID:19151183 IMP: Inferred from Mutant Phenotype C fig 2F Growth kinetics of ΔcspB, ΔcspD, and ΔcspBD at 4°C in DM. The results represent the means (± standard deviations) from duplicates of three independent experimental runs. complete
CACAO 11312
on LISMO:CSPB
Flagged
Public
Assessment		Amcmillan2016-03-22 19:34:35 CDT

Need to actually suggest a possible GO term and notes to get points

Requires Changes
Public
Assessment		DanielRenfro2016-03-09 09:58:40 CST

This annotation has been flagged because it has been challenged since last assessment

Flagged
Public
Assessment		Suzialeksander2016-03-08 12:48:24 CST

Every single page on this wiki has large red lettering stating BINDING terms are unacceptable. "DNA binding" is a BINDING term.

Requires Changes
✗ Go term
Private
Assessment		Suzialeksander2016-03-08 12:45:43 CSTYou need to be an instructor to view these notes.Requires Changes
Public
Assessment		DanielRenfro2016-03-08 11:15:51 CST

This annotation has been flagged because it has been edited since last assessment

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003677 DNA binding PMID:19151183 IMP: Inferred from Mutant Phenotype F As shown, an individual cspA, cspB or cspD gene deletion resulted in no detectable growth phenotype differences from the parent wild-type strain at 37°C in rich (BHI) and minimal (DM) nutrient conditions (Fig. 2A and B).Meanwhile, the growth analysis at 4°C showed that cspB deletion also had no influence, while deletion of cspA or cspD impairs L. monocytogenes growth under cold stress (Fig. 2C and D)Thus, loss of cspB gene functions, combined with a cspD deletion, also leads to impaired cold growth of EGD-e cells, suggesting some minimal CspB protein contribution to cold adaptation functions of this organism. complete
CACAO 11312
on LISMO:CSPB
Flagged
Public
Assessment		DanielRenfro2016-03-04 09:54:10 CST

This annotation has been flagged because it has been edited since last assessment

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0030307 positive regulation of cell growth PMID:19151183 IDA: Inferred from Direct Assay P Figure 2 shows growth of wild-type EGD-e and various csp gene family deletion mutants of this strain. Figure A to figure D shows kinetic growth of the wild-type, ΔcspA, ΔcspB, and ΔcspD strains in BHI and DM at optimal (37°C) and cold stress (4°C) temperatures. Figure E shows growth of wild-type, ΔcspA, and pPL2-cspA-complemented ΔcspA strains at 10°C in BHI. Figure F shows kinetic growth of ΔcspB, ΔcspD, and ΔcspBD at 4°C in DM. complete
CACAO 11312
on LISMO:CSPB
Flagged
Public
Assessment		DanielRenfro2016-03-03 20:03:44 CST

This annotation has been flagged because it has been edited since last assessment

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005737 cytoplasm PMID:19151183 IDA: Inferred from Direct Assay C Figure 2 shows growth of wild-type EGD-e and various csp gene family deletion mutants of this strain. Figure A to figure D shows kinetic growth of the wild-type, ΔcspA, ΔcspB, and ΔcspD strains in BHI and DM at optimal (37°C) and cold stress (4°C) temperatures. Figure E shows growth of wild-type, ΔcspA, and pPL2-cspA-complemented ΔcspA strains at 10°C in BHI. Figure F shows kinetic growth of ΔcspB, ΔcspD, and ΔcspBD at 4°C in DM. complete
CACAO 11312
on LISMO:CSPB
Flagged
Private
Assessment		Amcmillan2016-03-03 17:41:32 CSTYou need to be an instructor to view these notes.Requires Changes
✗ Go term
Public
Assessment		DanielRenfro2016-03-01 13:22:37 CST

This annotation has been flagged because it has been challenged since last assessment

Flagged
Private
Assessment		Suzialeksander2016-02-25 15:40:54 CSTYou need to be an instructor to view these notes.Requires Changes
✔ Publication
✔ Qualifier
✗ Go term
✗ Notes


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