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SCHPO:YLP3
Contents
| Species (Taxon ID) | Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast). (284812) | |
| Gene Name(s) | red1 | |
| Protein Name(s) | Protein red1
RNA elimination defective protein 1 | |
| External Links | ||
| UniProt | Q9UTR8 | |
| EMBL | CU329670 AB027946 | |
| RefSeq | NP_594850.2 | |
| BioGrid | 279682 | |
| DIP | DIP-36608N | |
| IntAct | Q9UTR8 | |
| MINT | Q9UTR8 | |
| STRING | 4896.SPAC1006.03c.1 | |
| iPTMnet | Q9UTR8 | |
| MaxQB | Q9UTR8 | |
| PaxDb | Q9UTR8 | |
| PRIDE | Q9UTR8 | |
| EnsemblFungi | SPAC1006.03c.1 | |
| GeneID | 2543254 | |
| KEGG | spo:SPAC1006.03c | |
| EuPathDB | FungiDB:SPAC1006.03c | |
| PomBase | SPAC1006.03c | |
| InParanoid | Q9UTR8 | |
| OMA | CKYETTG | |
| PRO | PR:Q9UTR8 | |
| Proteomes | UP000002485 | |
| GO | GO:0071920 GO:0000178 GO:1990342 GO:1990251 GO:1990345 GO:0016604 GO:0005634 GO:1990477 GO:0046872 GO:0003723 GO:0033621 GO:1902802 GO:1902801 GO:0043144 | |
| InterPro | IPR019607 IPR039278 | |
| PANTHER | PTHR21563 | |
| Pfam | PF10650 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0005634 |
nucleus |
ECO:0000314 |
C |
Microscopic analyses showed that the protein red1 localized to the nucleus of the cell (figure 1A). |
complete | |||||
|
part_of |
GO:1990477 |
NURS complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:1990345 |
MTREC complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:1990342 |
heterochromatin island |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:1990342 |
heterochromatin island |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:1990251 |
Mmi1 nuclear focus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
exists_during:(GO:0000278) |
Seeded From UniProt |
complete | ||
|
part_of |
GO:1990251 |
Mmi1 nuclear focus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:1902802 |
regulation of heterochromatin domain assembly |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:1902801 |
regulation of heterochromatin island assembly |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0071920 |
cleavage body |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0043144 |
snoRNA processing |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0033621 |
nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0033621 |
nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0033621 |
nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016604 |
nuclear body |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016604 |
nuclear body |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0000178 |
exosome (RNase complex) |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003723 |
RNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0046872 |
metal ion binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 1.3 Sugiyama, T & Sugioka-Sugiyama, R (2011) Red1 promotes the elimination of meiosis-specific mRNAs in vegetatively growing fission yeast. EMBO J. 30 1027-39 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 Egan, ED et al. (2014) Post-transcriptional regulation of meiotic genes by a nuclear RNA silencing complex. RNA 20 867-81 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 3.3 3.4 3.5 Lee, NN et al. (2013) Mtr4-like protein coordinates nuclear RNA processing for heterochromatin assembly and for telomere maintenance. Cell 155 1061-74 PubMed GONUTS page
- ↑ 4.0 4.1 Yamashita, A et al. (2013) A novel factor Iss10 regulates Mmi1-mediated selective elimination of meiotic transcripts. Nucleic Acids Res. 41 9680-7 PubMed GONUTS page
- ↑ Matsuyama, A et al. (2006) ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 24 841-7 PubMed GONUTS page
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