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SCHPO:RAD3

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Species (Taxon ID) Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast). (284812)
Gene Name(s) rad3
Protein Name(s) Protein kinase rad3

DNA repair protein rad3

External Links
UniProt Q02099
EMBL Y09076
U76307
CU329671
X63544
PIR T39911
RefSeq NP_595357.1
ProteinModelPortal Q02099
BioGrid 277242
IntAct Q02099
STRING 4896.SPBC216.05.1
iPTMnet Q02099
MaxQB Q02099
PaxDb Q02099
PRIDE Q02099
EnsemblFungi SPBC216.05.1
GeneID 2540719
KEGG spo:SPBC216.05
EuPathDB FungiDB:SPBC216.05
PomBase SPBC216.05
InParanoid Q02099
KO K06640
OMA WMLLPHF
PhylomeDB Q02099
PRO PR:Q02099
Proteomes UP000002485
GO GO:0070310
GO:0000781
GO:0005829
GO:0000790
GO:0000228
GO:0005730
GO:0005634
GO:1990421
GO:0005524
GO:0004672
GO:0004674
GO:0071897
GO:0000077
GO:0006975
GO:0006281
GO:1990853
GO:0031573
GO:0051598
GO:0033314
GO:0007095
GO:0045739
GO:1904514
GO:1904291
GO:0070198
GO:0000723
Gene3D 1.10.1070.11
InterPro IPR003152
IPR011009
IPR000403
IPR036940
IPR018936
IPR003151
IPR014009
IPR011990
IPR012993
Pfam PF02259
PF02260
PF00454
PF08064
SMART SM01343
SM00146
SM00802
SUPFAM SSF48452
SSF56112
PROSITE PS51189
PS51190
PS00916
PS50290

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0005829

cytosol

ECO:0000314

C

Source: GeneDB_Spombe

Missing: reference

GO:0000228

nuclear chromosome

ECO:0000314

C

Source: GeneDB_Spombe

Missing: reference

GO:0043234

protein complex

ECO:0000303

C

Source: GeneDB_Spombe

Missing: reference

GO:0004674

protein serine/threonine kinase activity

ECO:0000314

F

Source: GeneDB_Spombe

Missing: reference

GO:0031573

intra-S DNA damage checkpoint

ECO:0000314

P

Source: GeneDB_Spombe

Missing: reference

GO:0007131

reciprocal meiotic recombination

ECO:0000315

P

Source: GeneDB_Spombe

Missing: reference

GO:0004672

protein kinase activity

PMID:22302936[1]

ECO:0000315

F

Figure 2A,E show that mutants without Rad3 were unable to phosphorylate Thr93 of Ccq1 and those with Rad3 were able to phosphorylate Thr93 of Ccq1.

complete
CACAO 4394

enables

GO:0004672

protein kinase activity

PMID:22302936[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:1990853

histone H2A SQE motif phosphorylation

PMID:15226425[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:1990421

subtelomeric heterochromatin

PMID:12196391[3]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:1904514

positive regulation of initiation of premeiotic DNA replication

PMID:21084840[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:1904291

positive regulation of mitotic DNA damage checkpoint

PMID:15226425[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0070310

ATR-ATRIP complex

PMID:10559981[5]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0070198

protein localization to chromosome, telomeric region

PMID:20140190[6]

ECO:0000316

genetic interaction evidence used in manual assertion

PomBase:SPBC6B1.09c

P

has_input:(PomBase:SPCC23B6.03c)

Seeded From UniProt

complete

involved_in

GO:0051598

meiotic recombination checkpoint

PMID:29123917[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045739

positive regulation of DNA repair

PMID:15226425[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

GO:0005515

protein binding

PMID:15173168[8]

ECO:0000021

GeneDB_Spombe:SPAC694.06c

F

complete

involved_in

GO:0033315

meiotic G2/MI DNA replication checkpoint

PMID:10521402[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0033314

mitotic DNA replication checkpoint

PMID:11313465[10]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0031573

intra-S DNA damage checkpoint

PMID:19037101[11]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0031573

intra-S DNA damage checkpoint

PMID:1594599[12]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

GO:0005829

cytosol

PMID:16823372[13]

ECO:0000314

C

complete

involved_in

GO:0031573

intra-S DNA damage checkpoint

PMID:12032307[14]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0007095

mitotic G2 DNA damage checkpoint

PMID:1594599[12]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006975

DNA damage induced protein phosphorylation

PMID:15226425[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006281

DNA repair

PMID:1594599[12]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

GO:0007131

reciprocal meiotic recombination

PMID:12628934[15]

ECO:0000315

P

complete

part_of

GO:0005829

cytosol

PMID:16823372[13]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

GO:0007346

regulation of mitotic cell cycle

GO_REF:0000001

ECO:0000303

P

complete

part_of

GO:0005730

nucleolus

PMID:18180284[16]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0004674

protein serine/threonine kinase activity

PMID:16618806[17]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

  • has_direct_input:(PomBase:SPAC694.06c)
  • part_of:(GO:0072443)

Seeded From UniProt

complete

enables

GO:0004674

protein serine/threonine kinase activity

PMID:21099360[18]

ECO:0000314

direct assay evidence used in manual assertion

F

  • activated_by:(CHEBI:29035)
  • has_direct_input:(PomBase:SPAC694.06c)

Seeded From UniProt

complete

enables

GO:0004674

protein serine/threonine kinase activity

PMID:21084840[4]

ECO:0000314

direct assay evidence used in manual assertion

F

inhibited_by:(CHEBI:52289)

Seeded From UniProt

complete

enables

GO:0004674

protein serine/threonine kinase activity

PMID:21084840[4]

ECO:0000314

direct assay evidence used in manual assertion

F

has_direct_input:(PomBase:SPCC18B5.11c)

Seeded From UniProt

complete

enables

GO:0004674

protein serine/threonine kinase activity

PMID:21084840[4]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0004674

protein serine/threonine kinase activity

PMID:14585996[19]

ECO:0000314

direct assay evidence used in manual assertion

F

has_direct_input:(PomBase:SPAC694.06c)

Seeded From UniProt

complete

GO:0031573

intra-S DNA damage checkpoint

PMID:12032307[14]

ECO:0000315

P

complete

enables

GO:0004674

protein serine/threonine kinase activity

PMID:11553781[20]

ECO:0000314

direct assay evidence used in manual assertion

F

  • has_direct_input:(PomBase:SPCC1259.13)
  • part_of:(GO:0072434)

Seeded From UniProt

complete

GO:0031573

intra-S DNA damage checkpoint

PMID:19037101[11]

ECO:0000314

P

complete

enables

GO:0004674

protein serine/threonine kinase activity

PMID:11313465[10]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

GO:0043234

protein complex

GO_REF:0000001

ECO:0000303

C

complete

enables

GO:0004674

protein serine/threonine kinase activity

PMID:10512862[21]

ECO:0000314

direct assay evidence used in manual assertion

F

has_direct_input:(PomBase:SPCC1259.13)

Seeded From UniProt

complete

enables

GO:0004672

protein kinase activity

PMID:8978690[22]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0000790

nuclear chromatin

PMID:21945095[23]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0000790

nuclear chromatin

PMID:17531813[24]

ECO:0000314

direct assay evidence used in manual assertion

C

exists_during:(GO:0033314)

Seeded From UniProt

complete

part_of

GO:0000781

chromosome, telomeric region

PMID:20140190[6]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0000723

telomere maintenance

PMID:20140190[6]

ECO:0000316

genetic interaction evidence used in manual assertion

PomBase:SPBC6B1.09c

P

Seeded From UniProt

complete

involved_in

GO:0000723

telomere maintenance

PMID:12196391[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0000228

nuclear chromosome

PMID:8843195[25]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:21873635[26]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0045035
FB:FBgn0053554
MGI:MGI:104779
MGI:MGI:1928394
PANTHER:PTN000124197
RGD:1593265
RGD:68371
SGD:S000000340
SGD:S000001141
SGD:S000003827
UniProtKB:P78527
UniProtKB:Q13315
UniProtKB:Q96Q15
UniProtKB:Q9FR53
UniProtKB:Q9Y4A5
WB:WBGene00000226
WB:WBGene00007028

C

Seeded From UniProt

complete

enables

GO:0004674

protein serine/threonine kinase activity

PMID:21873635[26]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN001673376
PomBase:SPBC216.05
UniProtKB:Q13535

F

Seeded From UniProt

complete

involved_in

GO:0000723

telomere maintenance

PMID:21873635[26]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0004367
PANTHER:PTN001673376
PomBase:SPBC216.05
SGD:S000000340

P

Seeded From UniProt

complete

involved_in

GO:0000077

DNA damage checkpoint

PMID:21873635[26]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0004367
MGI:MGI:108028
PANTHER:PTN001673376
UniProtKB:C8VB89
UniProtKB:Q13535
WB:WBGene00000226

P

Seeded From UniProt

complete

enables

GO:0004674

protein serine/threonine kinase activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR012993

F

Seeded From UniProt

complete

enables

GO:0016301

kinase activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR018936
InterPro:IPR036940

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

involved_in

GO:0006281

DNA repair

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0234

P

Seeded From UniProt

complete

enables

GO:0005524

ATP binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0067

F

Seeded From UniProt

complete

involved_in

GO:0006974

cellular response to DNA damage stimulus

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0227

P

Seeded From UniProt

complete

enables

GO:0016301

kinase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0418

F

Seeded From UniProt

complete

enables

GO:0004674

protein serine/threonine kinase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0723

F

Seeded From UniProt

complete

enables

GO:0016740

transferase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0808

F

Seeded From UniProt

complete

enables

GO:0000166

nucleotide binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0547

F

Seeded From UniProt

complete

involved_in

GO:0016310

phosphorylation

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0418

P

Seeded From UniProt

complete

involved_in

GO:0071897

DNA biosynthetic process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0237

P

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 Yamazaki, H et al. (2012) Tel1(ATM) and Rad3(ATR) phosphorylate the telomere protein Ccq1 to recruit telomerase and elongate telomeres in fission yeast. Genes Dev. 26 241-6 PubMed GONUTS page
  2. 2.0 2.1 2.2 2.3 Nakamura, TM et al. (2004) Histone H2A phosphorylation controls Crb2 recruitment at DNA breaks, maintains checkpoint arrest, and influences DNA repair in fission yeast. Mol. Cell. Biol. 24 6215-30 PubMed GONUTS page
  3. 3.0 3.1 Nakamura, TM et al. (2002) Telomere binding of checkpoint sensor and DNA repair proteins contributes to maintenance of functional fission yeast telomeres. Genetics 161 1437-52 PubMed GONUTS page
  4. 4.0 4.1 4.2 4.3 Tougan, T et al. (2010) The Mek1 phosphorylation cascade plays a role in meiotic recombination of Schizosaccharomyces pombe. Cell Cycle 9 4688-702 PubMed GONUTS page
  5. Edwards, RJ et al. (1999) A Rad3-Rad26 complex responds to DNA damage independently of other checkpoint proteins. Nat. Cell Biol. 1 393-8 PubMed GONUTS page
  6. 6.0 6.1 6.2 Subramanian, L & Nakamura, TM (2010) A kinase-independent role for the Rad3(ATR)-Rad26(ATRIP) complex in recruitment of Tel1(ATM) to telomeres in fission yeast. PLoS Genet. 6 e1000839 PubMed GONUTS page
  7. Moiseeva, V et al. (2017) The telomere bouquet facilitates meiotic prophase progression and exit in fission yeast. Cell Discov 3 17041 PubMed GONUTS page
  8. Tanaka, K & Russell, P (2004) Cds1 phosphorylation by Rad3-Rad26 kinase is mediated by forkhead-associated domain interaction with Mrc1. J. Biol. Chem. 279 32079-86 PubMed GONUTS page
  9. Murakami, H & Nurse, P (1999) Meiotic DNA replication checkpoint control in fission yeast. Genes Dev. 13 2581-93 PubMed GONUTS page
  10. 10.0 10.1 Tanaka, K et al. (2001) Threonine-11, phosphorylated by Rad3 and atm in vitro, is required for activation of fission yeast checkpoint kinase Cds1. Mol. Cell. Biol. 21 3398-404 PubMed GONUTS page
  11. 11.0 11.1 Willis, N & Rhind, N (2009) Mus81, Rhp51(Rad51), and Rqh1 form an epistatic pathway required for the S-phase DNA damage checkpoint. Mol. Biol. Cell 20 819-33 PubMed GONUTS page
  12. 12.0 12.1 12.2 Jimenez, G et al. (1992) The rad3+ gene of Schizosaccharomyces pombe is involved in multiple checkpoint functions and in DNA repair. Proc. Natl. Acad. Sci. U.S.A. 89 4952-6 PubMed GONUTS page
  13. 13.0 13.1 Matsuyama, A et al. (2006) ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 24 841-7 PubMed GONUTS page
  14. 14.0 14.1 Marchetti, MA et al. (2002) A single unbranched S-phase DNA damage and replication fork blockage checkpoint pathway. Proc. Natl. Acad. Sci. U.S.A. 99 7472-7 PubMed GONUTS page
  15. Prudden, J et al. (2003) Pathway utilization in response to a site-specific DNA double-strand break in fission yeast. EMBO J. 22 1419-30 PubMed GONUTS page
  16. Bailis, JM et al. (2008) Minichromosome maintenance proteins interact with checkpoint and recombination proteins to promote s-phase genome stability. Mol. Cell. Biol. 28 1724-38 PubMed GONUTS page
  17. Xu, YJ et al. (2006) Two-stage mechanism for activation of the DNA replication checkpoint kinase Cds1 in fission yeast. Genes Dev. 20 990-1003 PubMed GONUTS page
  18. Matsumoto, S et al. (2010) Hsk1 kinase and Cdc45 regulate replication stress-induced checkpoint responses in fission yeast. Cell Cycle 9 4627-37 PubMed GONUTS page
  19. Zhao, H et al. (2003) Replication checkpoint protein Mrc1 is regulated by Rad3 and Tel1 in fission yeast. Mol. Cell. Biol. 23 8395-403 PubMed GONUTS page
  20. Lopez-Girona, A et al. (2001) Serine-345 is required for Rad3-dependent phosphorylation and function of checkpoint kinase Chk1 in fission yeast. Proc. Natl. Acad. Sci. U.S.A. 98 11289-94 PubMed GONUTS page
  21. Chapman, CR et al. (1999) Requirement of sequences outside the conserved kinase domain of fission yeast Rad3p for checkpoint control. Mol. Biol. Cell 10 3223-38 PubMed GONUTS page
  22. Bentley, NJ et al. (1996) The Schizosaccharomyces pombe rad3 checkpoint gene. EMBO J. 15 6641-51 PubMed GONUTS page
  23. Taylor, M et al. (2011) Mcm10 interacts with Rad4/Cut5(TopBP1) and its association with origins of DNA replication is dependent on Rad4/Cut5(TopBP1). DNA Repair (Amst.) 10 1154-63 PubMed GONUTS page
  24. Hermand, D & Nurse, P (2007) Cdc18 enforces long-term maintenance of the S phase checkpoint by anchoring the Rad3-Rad26 complex to chromatin. Mol. Cell 26 553-63 PubMed GONUTS page
  25. Keegan, KS et al. (1996) The Atr and Atm protein kinases associate with different sites along meiotically pairing chromosomes. Genes Dev. 10 2423-37 PubMed GONUTS page
  26. 26.0 26.1 26.2 26.3 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page