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SCHPO:RAD3
Contents
Species (Taxon ID) | Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast). (284812) | |
Gene Name(s) | rad3 | |
Protein Name(s) | Protein kinase rad3
DNA repair protein rad3 | |
External Links | ||
UniProt | Q02099 | |
EMBL | Y09076 U76307 CU329671 X63544 | |
PIR | T39911 | |
RefSeq | NP_595357.1 | |
ProteinModelPortal | Q02099 | |
BioGrid | 277242 | |
IntAct | Q02099 | |
STRING | 4896.SPBC216.05.1 | |
iPTMnet | Q02099 | |
MaxQB | Q02099 | |
PaxDb | Q02099 | |
PRIDE | Q02099 | |
EnsemblFungi | SPBC216.05.1 | |
GeneID | 2540719 | |
KEGG | spo:SPBC216.05 | |
EuPathDB | FungiDB:SPBC216.05 | |
PomBase | SPBC216.05 | |
InParanoid | Q02099 | |
KO | K06640 | |
OMA | WMLLPHF | |
PhylomeDB | Q02099 | |
PRO | PR:Q02099 | |
Proteomes | UP000002485 | |
GO | GO:0070310 GO:0000781 GO:0005829 GO:0000790 GO:0000228 GO:0005730 GO:0005634 GO:1990421 GO:0005524 GO:0004672 GO:0004674 GO:0071897 GO:0000077 GO:0006975 GO:0006281 GO:1990853 GO:0031573 GO:0051598 GO:0033314 GO:0007095 GO:0045739 GO:1904514 GO:1904291 GO:0070198 GO:0000723 | |
Gene3D | 1.10.1070.11 | |
InterPro | IPR003152 IPR011009 IPR000403 IPR036940 IPR018936 IPR003151 IPR014009 IPR011990 IPR012993 | |
Pfam | PF02259 PF02260 PF00454 PF08064 | |
SMART | SM01343 SM00146 SM00802 | |
SUPFAM | SSF48452 SSF56112 | |
PROSITE | PS51189 PS51190 PS00916 PS50290 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
GO:0005829 |
cytosol |
ECO:0000314 |
C |
Source: GeneDB_Spombe |
Missing: reference | |||||
GO:0000228 |
nuclear chromosome |
ECO:0000314 |
C |
Source: GeneDB_Spombe |
Missing: reference | |||||
GO:0043234 |
protein complex |
ECO:0000303 |
C |
Source: GeneDB_Spombe |
Missing: reference | |||||
GO:0004674 |
protein serine/threonine kinase activity |
ECO:0000314 |
F |
Source: GeneDB_Spombe |
Missing: reference | |||||
GO:0031573 |
intra-S DNA damage checkpoint |
ECO:0000314 |
P |
Source: GeneDB_Spombe |
Missing: reference | |||||
GO:0007131 |
reciprocal meiotic recombination |
ECO:0000315 |
P |
Source: GeneDB_Spombe |
Missing: reference | |||||
GO:0004672 |
protein kinase activity |
ECO:0000315 |
F |
Figure 2A,E show that mutants without Rad3 were unable to phosphorylate Thr93 of Ccq1 and those with Rad3 were able to phosphorylate Thr93 of Ccq1. |
complete | |||||
enables |
GO:0004672 |
protein kinase activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:1990853 |
histone H2A SQE motif phosphorylation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:1990421 |
subtelomeric heterochromatin |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:1904514 |
positive regulation of initiation of premeiotic DNA replication |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:1904291 |
positive regulation of mitotic DNA damage checkpoint |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0070310 |
ATR-ATRIP complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0070198 |
protein localization to chromosome, telomeric region |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
PomBase:SPBC6B1.09c |
P |
has_input:(PomBase:SPCC23B6.03c) |
Seeded From UniProt |
complete | |
involved_in |
GO:0051598 |
meiotic recombination checkpoint |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045739 |
positive regulation of DNA repair |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
GO:0005515 |
protein binding |
ECO:0000021 |
GeneDB_Spombe:SPAC694.06c |
F |
complete | |||||
involved_in |
GO:0033315 |
meiotic G2/MI DNA replication checkpoint |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0033314 |
mitotic DNA replication checkpoint |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0031573 |
intra-S DNA damage checkpoint |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0031573 |
intra-S DNA damage checkpoint |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
GO:0005829 |
cytosol |
ECO:0000314 |
C |
complete | ||||||
involved_in |
GO:0031573 |
intra-S DNA damage checkpoint |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007095 |
mitotic G2 DNA damage checkpoint |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006975 |
DNA damage induced protein phosphorylation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006281 |
DNA repair |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
GO:0007131 |
reciprocal meiotic recombination |
ECO:0000315 |
P |
complete | ||||||
part_of |
GO:0005829 |
cytosol |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
GO:0007346 |
regulation of mitotic cell cycle |
ECO:0000303 |
P |
complete | ||||||
part_of |
GO:0005730 |
nucleolus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0004674 |
protein serine/threonine kinase activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
|
Seeded From UniProt |
complete | ||
enables |
GO:0004674 |
protein serine/threonine kinase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
|
Seeded From UniProt |
complete | ||
enables |
GO:0004674 |
protein serine/threonine kinase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
inhibited_by:(CHEBI:52289) |
Seeded From UniProt |
complete | ||
enables |
GO:0004674 |
protein serine/threonine kinase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
has_direct_input:(PomBase:SPCC18B5.11c) |
Seeded From UniProt |
complete | ||
enables |
GO:0004674 |
protein serine/threonine kinase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
|
Seeded From UniProt |
complete | ||
enables |
GO:0004674 |
protein serine/threonine kinase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
has_direct_input:(PomBase:SPAC694.06c) |
Seeded From UniProt |
complete | ||
GO:0031573 |
intra-S DNA damage checkpoint |
ECO:0000315 |
P |
complete | ||||||
enables |
GO:0004674 |
protein serine/threonine kinase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
|
Seeded From UniProt |
complete | ||
GO:0031573 |
intra-S DNA damage checkpoint |
ECO:0000314 |
P |
complete | ||||||
enables |
GO:0004674 |
protein serine/threonine kinase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
GO:0043234 |
protein complex |
ECO:0000303 |
C |
complete | ||||||
enables |
GO:0004674 |
protein serine/threonine kinase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
has_direct_input:(PomBase:SPCC1259.13) |
Seeded From UniProt |
complete | ||
enables |
GO:0004672 |
protein kinase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0000790 |
nuclear chromatin |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
|
Seeded From UniProt |
complete | ||
part_of |
GO:0000790 |
nuclear chromatin |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
exists_during:(GO:0033314) |
Seeded From UniProt |
complete | ||
part_of |
GO:0000781 |
chromosome, telomeric region |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0000723 |
telomere maintenance |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
PomBase:SPBC6B1.09c |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0000723 |
telomere maintenance |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0000228 |
nuclear chromosome |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0045035 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0004674 |
protein serine/threonine kinase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN001673376 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0000723 |
telomere maintenance |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0004367 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0000077 |
DNA damage checkpoint |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0004367 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0004674 |
protein serine/threonine kinase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0016301 |
kinase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006281 |
DNA repair |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0005524 |
ATP binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006974 |
cellular response to DNA damage stimulus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0016301 |
kinase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0004674 |
protein serine/threonine kinase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0016740 |
transferase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0000166 |
nucleotide binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0016310 |
phosphorylation |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0071897 |
DNA biosynthetic process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Yamazaki, H et al. (2012) Tel1(ATM) and Rad3(ATR) phosphorylate the telomere protein Ccq1 to recruit telomerase and elongate telomeres in fission yeast. Genes Dev. 26 241-6 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 Nakamura, TM et al. (2004) Histone H2A phosphorylation controls Crb2 recruitment at DNA breaks, maintains checkpoint arrest, and influences DNA repair in fission yeast. Mol. Cell. Biol. 24 6215-30 PubMed GONUTS page
- ↑ 3.0 3.1 Nakamura, TM et al. (2002) Telomere binding of checkpoint sensor and DNA repair proteins contributes to maintenance of functional fission yeast telomeres. Genetics 161 1437-52 PubMed GONUTS page
- ↑ 4.0 4.1 4.2 4.3 Tougan, T et al. (2010) The Mek1 phosphorylation cascade plays a role in meiotic recombination of Schizosaccharomyces pombe. Cell Cycle 9 4688-702 PubMed GONUTS page
- ↑ Edwards, RJ et al. (1999) A Rad3-Rad26 complex responds to DNA damage independently of other checkpoint proteins. Nat. Cell Biol. 1 393-8 PubMed GONUTS page
- ↑ 6.0 6.1 6.2 Subramanian, L & Nakamura, TM (2010) A kinase-independent role for the Rad3(ATR)-Rad26(ATRIP) complex in recruitment of Tel1(ATM) to telomeres in fission yeast. PLoS Genet. 6 e1000839 PubMed GONUTS page
- ↑ Moiseeva, V et al. (2017) The telomere bouquet facilitates meiotic prophase progression and exit in fission yeast. Cell Discov 3 17041 PubMed GONUTS page
- ↑ Tanaka, K & Russell, P (2004) Cds1 phosphorylation by Rad3-Rad26 kinase is mediated by forkhead-associated domain interaction with Mrc1. J. Biol. Chem. 279 32079-86 PubMed GONUTS page
- ↑ Murakami, H & Nurse, P (1999) Meiotic DNA replication checkpoint control in fission yeast. Genes Dev. 13 2581-93 PubMed GONUTS page
- ↑ 10.0 10.1 Tanaka, K et al. (2001) Threonine-11, phosphorylated by Rad3 and atm in vitro, is required for activation of fission yeast checkpoint kinase Cds1. Mol. Cell. Biol. 21 3398-404 PubMed GONUTS page
- ↑ 11.0 11.1 Willis, N & Rhind, N (2009) Mus81, Rhp51(Rad51), and Rqh1 form an epistatic pathway required for the S-phase DNA damage checkpoint. Mol. Biol. Cell 20 819-33 PubMed GONUTS page
- ↑ 12.0 12.1 12.2 Jimenez, G et al. (1992) The rad3+ gene of Schizosaccharomyces pombe is involved in multiple checkpoint functions and in DNA repair. Proc. Natl. Acad. Sci. U.S.A. 89 4952-6 PubMed GONUTS page
- ↑ 13.0 13.1 Matsuyama, A et al. (2006) ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 24 841-7 PubMed GONUTS page
- ↑ 14.0 14.1 Marchetti, MA et al. (2002) A single unbranched S-phase DNA damage and replication fork blockage checkpoint pathway. Proc. Natl. Acad. Sci. U.S.A. 99 7472-7 PubMed GONUTS page
- ↑ Prudden, J et al. (2003) Pathway utilization in response to a site-specific DNA double-strand break in fission yeast. EMBO J. 22 1419-30 PubMed GONUTS page
- ↑ Bailis, JM et al. (2008) Minichromosome maintenance proteins interact with checkpoint and recombination proteins to promote s-phase genome stability. Mol. Cell. Biol. 28 1724-38 PubMed GONUTS page
- ↑ Xu, YJ et al. (2006) Two-stage mechanism for activation of the DNA replication checkpoint kinase Cds1 in fission yeast. Genes Dev. 20 990-1003 PubMed GONUTS page
- ↑ Matsumoto, S et al. (2010) Hsk1 kinase and Cdc45 regulate replication stress-induced checkpoint responses in fission yeast. Cell Cycle 9 4627-37 PubMed GONUTS page
- ↑ Zhao, H et al. (2003) Replication checkpoint protein Mrc1 is regulated by Rad3 and Tel1 in fission yeast. Mol. Cell. Biol. 23 8395-403 PubMed GONUTS page
- ↑ Lopez-Girona, A et al. (2001) Serine-345 is required for Rad3-dependent phosphorylation and function of checkpoint kinase Chk1 in fission yeast. Proc. Natl. Acad. Sci. U.S.A. 98 11289-94 PubMed GONUTS page
- ↑ Chapman, CR et al. (1999) Requirement of sequences outside the conserved kinase domain of fission yeast Rad3p for checkpoint control. Mol. Biol. Cell 10 3223-38 PubMed GONUTS page
- ↑ Bentley, NJ et al. (1996) The Schizosaccharomyces pombe rad3 checkpoint gene. EMBO J. 15 6641-51 PubMed GONUTS page
- ↑ Taylor, M et al. (2011) Mcm10 interacts with Rad4/Cut5(TopBP1) and its association with origins of DNA replication is dependent on Rad4/Cut5(TopBP1). DNA Repair (Amst.) 10 1154-63 PubMed GONUTS page
- ↑ Hermand, D & Nurse, P (2007) Cdc18 enforces long-term maintenance of the S phase checkpoint by anchoring the Rad3-Rad26 complex to chromatin. Mol. Cell 26 553-63 PubMed GONUTS page
- ↑ Keegan, KS et al. (1996) The Atr and Atm protein kinases associate with different sites along meiotically pairing chromosomes. Genes Dev. 10 2423-37 PubMed GONUTS page
- ↑ 26.0 26.1 26.2 26.3 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
d
f
m
- GO:0033315 ! meiotic G2/MI DNA replication checkpoint signaling
- GO:0051328 ! meiotic interphase
- GO:0051598 ! meiotic recombination checkpoint signaling
- GO:0033314 ! mitotic DNA replication checkpoint signaling
- GO:0007095 ! mitotic G2 DNA damage checkpoint signaling
- GO:0031573 ! mitotic intra-S DNA damage checkpoint signaling
n
p
- GO:0016310 ! phosphorylation
- GO:0045739 ! positive regulation of DNA repair
- GO:1904291 ! positive regulation of mitotic DNA damage checkpoint
- GO:1904514 ! positive regulation of initiation of premeiotic DNA replication
- GO:0005515 ! protein binding
- GO:0043234 ! protein complex
- GO:0004672 ! protein kinase activity
- GO:0070198 ! protein localization to chromosome, telomeric region
- GO:0004674 ! protein serine/threonine kinase activity
r
s
- Schizosaccharomyces
- Schizosaccharomyces pombe
- Schizosaccharomycetaceae
- Schizosaccharomycetales
- Schizosaccharomycetes
- GO:0072443 ! signal transduction involved in mitotic DNA replication checkpoint
- GO:0072434 ! signal transduction involved in mitotic G2 DNA damage checkpoint
- GO:1990421 ! subtelomeric heterochromatin