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SCHPO:ALKBH
Contents
| Species (Taxon ID) | Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast). (284812) | |
| Gene Name(s) | abh1 | |
| Protein Name(s) | Alpha-ketoglutarate-dependent dioxygenase abh1
Alkylated DNA repair protein alkB homolog | |
| External Links | ||
| UniProt | O60066 | |
| EMBL | CU329671 AB548892 | |
| PIR | T39405 | |
| RefSeq | NP_596553.3 | |
| SMR | O60066 | |
| BioGrid | 276479 | |
| STRING | 4896.SPBC13G1.04c.1 | |
| MaxQB | O60066 | |
| PaxDb | O60066 | |
| PRIDE | O60066 | |
| GeneID | 2539935 | |
| KEGG | spo:SPBC13G1.04c | |
| EuPathDB | FungiDB:SPBC13G1.04c | |
| PomBase | SPBC13G1.04c | |
| HOGENOM | HOG000215431 | |
| InParanoid | O60066 | |
| OMA | NVYSPGD | |
| PRO | PR:O60066 | |
| Proteomes | UP000002485 | |
| GO | GO:0005737 GO:0005829 GO:0005739 GO:0005719 GO:0005634 GO:0051213 GO:0008198 GO:1990984 GO:0006281 GO:1990983 | |
| Gene3D | 2.60.120.590 | |
| InterPro | IPR004574 IPR027450 IPR037151 IPR005123 | |
| PANTHER | PTHR16557 | |
| Pfam | PF13532 | |
| TIGRFAMs | TIGR00568 | |
| PROSITE | PS51471 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
enables |
GO:1990984 |
tRNA demethylase activity |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:1990983 |
tRNA demethylation |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
NOT|involved_in |
GO:0006307 |
DNA dealkylation involved in DNA repair |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
PomBase:SPAPB24D3.04c |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005829 |
cytosol |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0051213 |
dioxygenase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10037 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0008198 |
ferrous iron binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10037 |
F |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005739 |
mitochondrion |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000421874 |
C |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005719 |
nuclear euchromatin |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:2384034 |
C |
Seeded From UniProt |
complete | ||
|
enables |
GO:0016491 |
oxidoreductase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0055114 |
oxidation-reduction process |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016491 |
oxidoreductase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0046872 |
metal ion binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0051213 |
dioxygenase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0055114 |
oxidation-reduction process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006281 |
DNA repair |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006974 |
cellular response to DNA damage stimulus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 Korvald, H et al. (2012) The Schizosaccharomyces pombe AlkB homolog Abh1 exhibits AP lyase activity but no demethylase activity. DNA Repair (Amst.) 11 453-62 PubMed GONUTS page
- ↑ 2.0 2.1 Matsuyama, A et al. (2006) ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 24 841-7 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 3.3 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
