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RAT:DYN1
Contents
Species (Taxon ID) | Rattus norvegicus (Rat). (10116) | |
Gene Name(s) | Dnm1 (synonyms: Dnm) | |
Protein Name(s) | Dynamin-1
B-dynamin D100 Dynamin, brain | |
External Links | ||
UniProt | P21575 | |
EMBL | X54531 CO398357 CB583951 CB708564 | |
PIR | S11508 | |
RefSeq | NP_542420.1 | |
UniGene | Rn.10354 | |
PDB | 2AKA 3ZVR | |
PDBsum | 2AKA 3ZVR | |
ProteinModelPortal | P21575 | |
SMR | P21575 | |
BioGrid | 250837 | |
DIP | DIP-30978N | |
IntAct | P21575 | |
MINT | MINT-95899 | |
STRING | 10116.ENSRNOP00000046016 | |
BindingDB | P21575 | |
ChEMBL | CHEMBL1075191 | |
PhosphoSite | P21575 | |
World-2DPAGE | 0004:P21575 | |
PaxDb | P21575 | |
PRIDE | P21575 | |
Ensembl | ENSRNOT00000042762 ENSRNOT00000064039 | |
GeneID | 140694 | |
KEGG | rno:140694 | |
UCSC | RGD:71096 | |
CTD | 1759 | |
RGD | 71096 | |
eggNOG | COG0699 | |
GeneTree | ENSGT00760000119213 | |
HOGENOM | HOG000161069 | |
HOVERGEN | HBG107833 | |
InParanoid | P21575 | |
KO | K01528 | |
OMA | KIKEPCL | |
OrthoDB | EOG76MK7N | |
PhylomeDB | P21575 | |
BRENDA | 3.6.5.5 | |
Reactome | REACT_198830 REACT_235514 REACT_243437 REACT_247122 REACT_250855 REACT_262886 | |
EvolutionaryTrace | P21575 | |
NextBio | 620679 | |
PMAP-CutDB | P21575 | |
Proteomes | UP000002494 | |
ExpressionAtlas | P21575 | |
Genevestigator | P21575 | |
GO | GO:0005794 GO:0030117 GO:0005874 GO:0005886 GO:0043234 GO:0005525 GO:0003924 GO:0042802 GO:0050998 GO:0044822 GO:0008022 GO:0032403 GO:0007032 GO:0031623 GO:0006898 | |
Gene3D | 2.30.29.30 3.40.50.300 | |
InterPro | IPR027741 IPR000375 IPR001401 IPR019762 IPR022812 IPR030381 IPR003130 IPR020850 IPR027417 IPR001849 IPR011993 | |
PANTHER | PTHR11566 PTHR11566:SF32 | |
Pfam | PF01031 PF02212 PF00169 | |
PRINTS | PR00195 | |
SMART | SM00053 SM00302 SM00233 | |
SUPFAM | SSF52540 | |
PROSITE | PS00410 PS51718 PS51388 PS50003 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
involved_in |
GO:0031623 |
receptor internalization |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0098835 |
presynaptic endocytic zone membrane |
ECO:0006003 |
electron microscopy evidence used in manual assertion |
C |
part_of:(UBERON:0002298) |
Seeded From UniProt |
complete | ||
part_of |
GO:0098835 |
presynaptic endocytic zone membrane |
ECO:0006064 |
cell-free assay evidence used in manual assertion |
C |
part_of:(UBERON:0002298) |
Seeded From UniProt |
complete | ||
part_of |
GO:0098835 |
presynaptic endocytic zone membrane |
ECO:0006062 |
wide-field fluorescence microscopy evidence used in manual assertion |
C |
part_of:(UBERON:0002298) |
Seeded From UniProt |
complete | ||
involved_in |
GO:1904645 |
response to amyloid-beta |
ECO:0000270 |
expression pattern evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:1903423 |
positive regulation of synaptic vesicle recycling |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:1900244 |
positive regulation of synaptic vesicle endocytosis |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:1900242 |
regulation of synaptic vesicle endocytosis |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0050998 |
nitric-oxide synthase binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
RGD:3186 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0045202 |
synapse |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0044877 |
protein-containing complex binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
RGD:620274 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0044877 |
protein-containing complex binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
RGD:3980 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0044877 |
protein-containing complex binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0043196 |
varicosity |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0032991 |
protein-containing complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0031749 |
D2 dopamine receptor binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
RGD:2520 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0017124 |
SH3 domain binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0008022 |
protein C-terminus binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
RGD:621786 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0008022 |
protein C-terminus binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
RGD:708456 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0008021 |
synaptic vesicle |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006898 |
receptor-mediated endocytosis |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005886 |
plasma membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005794 |
Golgi apparatus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0002031 |
G protein-coupled receptor internalization |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0098884 |
postsynaptic neurotransmitter receptor internalization |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000170172 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0098844 |
postsynaptic endocytic zone membrane |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000170172 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0050803 |
regulation of synapse structure or activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0003392 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0045211 |
postsynaptic membrane |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000170172 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0045202 |
synapse |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0003392 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0044327 |
dendritic spine head |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000170172 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0043197 |
dendritic spine |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000170172 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0031623 |
receptor internalization |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000902093 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0031410 |
cytoplasmic vesicle |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000902092 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0030424 |
axon |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000170172 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0016185 |
synaptic vesicle budding from presynaptic endocytic zone membrane |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0003392 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0016020 |
membrane |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000170013 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0014069 |
postsynaptic density |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000170172 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0008017 |
microtubule binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0003392 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0005886 |
plasma membrane |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0003392 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0003392 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0003924 |
GTPase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000170013 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0042802 |
identical protein binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0042802 |
identical protein binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:1901998 |
toxin transport |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P39053 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0098978 |
glutamatergic synapse |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P39053 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0098835 |
presynaptic endocytic zone membrane |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P39053 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0098684 |
photoreceptor ribbon synapse |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P39053 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0050804 |
modulation of chemical synaptic transmission |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P39053 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0048488 |
synaptic vesicle endocytosis |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P39053 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0030117 |
membrane coat |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P39053 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0019901 |
protein kinase binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P39053 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0016185 |
synaptic vesicle budding from presynaptic endocytic zone membrane |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P39053 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0001917 |
photoreceptor inner segment |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P39053 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0042802 |
identical protein binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q05193 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0007032 |
endosome organization |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q05193 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006898 |
receptor-mediated endocytosis |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q05193 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006897 |
endocytosis |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q05193 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005654 |
nucleoplasm |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q05193 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q05193 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0003924 |
GTPase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0005525 |
GTP binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR000375 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0072583 |
clathrin-dependent endocytosis |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0042802 |
identical protein binding |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005886 |
plasma membrane |
Reactome:R-RNO-182041 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005874 |
microtubule |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0000166 |
nucleotide binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005856 |
cytoskeleton |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006897 |
endocytosis |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005794 |
Golgi apparatus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0005525 |
GTP binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0016787 |
hydrolase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Lin, JW et al. (2000) Distinct molecular mechanisms and divergent endocytotic pathways of AMPA receptor internalization. Nat. Neurosci. 3 1282-90 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 Takei, K et al. (1995) Tubular membrane invaginations coated by dynamin rings are induced by GTP-gamma S in nerve terminals. Nature 374 186-90 PubMed GONUTS page
- ↑ Cao, Y et al. (2010) Changed clathrin regulatory proteins in the brains of Alzheimer's disease patients and animal models. J. Alzheimers Dis. 22 329-42 PubMed GONUTS page
- ↑ 4.0 4.1 Lu, J et al. (2007) Postsynaptic positioning of endocytic zones and AMPA receptor cycling by physical coupling of dynamin-3 to Homer. Neuron 55 874-89 PubMed GONUTS page
- ↑ Anggono, V & Robinson, PJ (2007) Syndapin I and endophilin I bind overlapping proline-rich regions of dynamin I: role in synaptic vesicle endocytosis. J. Neurochem. 102 931-43 PubMed GONUTS page
- ↑ 6.0 6.1 Anggono, V et al. (2006) Syndapin I is the phosphorylation-regulated dynamin I partner in synaptic vesicle endocytosis. Nat. Neurosci. 9 752-60 PubMed GONUTS page
- ↑ Hyndman, KA et al. (2011) Dynamin activates NO production in rat renal inner medullary collecting ducts via protein-protein interaction with NOS1. Am. J. Physiol. Renal Physiol. 301 F118-24 PubMed GONUTS page
- ↑ 8.0 8.1 Wigge, P et al. (1997) Amphiphysin heterodimers: potential role in clathrin-mediated endocytosis. Mol. Biol. Cell 8 2003-15 PubMed GONUTS page
- ↑ Suginta, W et al. (2001) Chloride intracellular channel protein CLIC4 (p64H1) binds directly to brain dynamin I in a complex containing actin, tubulin and 14-3-3 isoforms. Biochem. J. 359 55-64 PubMed GONUTS page
- ↑ 10.0 10.1 Krendel, M et al. (2007) Myosin 1E interacts with synaptojanin-1 and dynamin and is involved in endocytosis. FEBS Lett. 581 644-50 PubMed GONUTS page
- ↑ 11.0 11.1 Gray, NW et al. (2003) Dynamin 3 is a component of the postsynapse, where it interacts with mGluR5 and Homer. Curr. Biol. 13 510-5 PubMed GONUTS page
- ↑ 12.0 12.1 Kabbani, N et al. (2004) Dynamin-2 associates with the dopamine receptor signalplex and regulates internalization of activated D2 receptors. Cell. Signal. 16 497-503 PubMed GONUTS page
- ↑ Ringstad, N et al. (1997) The SH3p4/Sh3p8/SH3p13 protein family: binding partners for synaptojanin and dynamin via a Grb2-like Src homology 3 domain. Proc. Natl. Acad. Sci. U.S.A. 94 8569-74 PubMed GONUTS page
- ↑ 14.0 14.1 Ahn, S et al. (2002) Src-dependent tyrosine phosphorylation regulates dynamin self-assembly and ligand-induced endocytosis of the epidermal growth factor receptor. J. Biol. Chem. 277 26642-51 PubMed GONUTS page
- ↑ 15.0 15.1 15.2 Cao, H et al. (1998) Differential distribution of dynamin isoforms in mammalian cells. Mol. Biol. Cell 9 2595-609 PubMed GONUTS page
- ↑ 16.00 16.01 16.02 16.03 16.04 16.05 16.06 16.07 16.08 16.09 16.10 16.11 16.12 16.13 16.14 16.15 16.16 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Ford, MG et al. (2011) The crystal structure of dynamin. Nature 477 561-6 PubMed GONUTS page
- ↑ Wang, G et al. (2006) Nitric oxide regulates endocytosis by S-nitrosylation of dynamin. Proc. Natl. Acad. Sci. U.S.A. 103 1295-300 PubMed GONUTS page
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- GO:0001917 ! photoreceptor inner segment
- GO:0098684 ! photoreceptor ribbon synapse
- GO:0005886 ! plasma membrane
- GO:1900244 ! positive regulation of synaptic vesicle endocytosis
- GO:1903423 ! positive regulation of synaptic vesicle recycling
- GO:0098844 ! postsynaptic endocytic zone membrane
- GO:0098884 ! postsynaptic neurotransmitter receptor internalization
- GO:0014069 ! postsynaptic density
- GO:0045211 ! postsynaptic membrane
- GO:0098835 ! presynaptic endocytic zone membrane
- GO:0044877 ! protein-containing complex binding
- GO:0032991 ! protein-containing complex
- GO:0019901 ! protein kinase binding
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