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ORYSJ:DCL4

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Species (Taxon ID) Oryza sativa subsp. japonica (Rice). (39947)
Gene Name(s) DCL4 (synonyms: SHO1)
Protein Name(s) Endoribonuclease Dicer homolog 4

Dicer-like protein 4 OsDCL4 Protein SHOOT ORGANIZATION 1

External Links
UniProt A7LFZ6
EMBL EU009924
AB353922
AL606607
AP008210
AK066586
RefSeq NP_001053278.1
UniGene Os.27988
PaxDb A7LFZ6
GeneID 4336362
KEGG osa:4336362
Gramene A7LFZ6
eggNOG COG1111
HOGENOM HOG000083706
InParanoid A7LFZ6
KO K11592
Proteomes UP000000763
GO GO:0005634
GO:0005524
GO:0008026
GO:0046872
GO:0004525
GO:0003723
GO:0007267
GO:0006342
GO:0016569
GO:0006306
GO:0006353
GO:0009793
GO:0019915
GO:0010216
GO:0010492
GO:0009933
GO:0000278
GO:0000398
GO:0009640
GO:0009944
GO:0045893
GO:0043687
GO:0010599
GO:0035196
GO:0010267
GO:0016567
GO:0009909
GO:0048608
GO:0050826
GO:0010162
GO:0009845
GO:0010182
GO:0010050
GO:0010228
GO:0009616
Gene3D 1.10.1520.10
3.30.160.20
3.40.50.300
InterPro IPR011545
IPR005034
IPR014720
IPR014001
IPR001650
IPR027417
IPR003100
IPR000999
Pfam PF00270
PF03368
PF00035
PF00271
PF02170
PF00636
SMART SM00487
SM00358
SM00490
SM00949
SM00535
SUPFAM SSF101690
SSF52540
SSF69065
PROSITE PS51327
PS50137
PS51192
PS51194
PS50821
PS00517
PS50142

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

involved_in

GO:0048608

reproductive structure development

PMID:17905898[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0010492

maintenance of shoot apical meristem identity

PMID:17804793[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0010267

production of ta-siRNAs involved in RNA interference

PMID:17905898[1]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0009944

polarity specification of adaxial/abaxial axis

PMID:17905898[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0030422

production of siRNA involved in RNA interference

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0034246
FB:FBgn0039016
MGI:MGI:2177178
PANTHER:PTN000383724
PomBase:SPCC188.13c
UniProtKB:Q9LXW7
UniProtKB:Q9UPY3
WB:WBGene00000939

P

Seeded From UniProt

complete

part_of

GO:0016442

RISC complex

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0034246
FB:FBgn0039016
PANTHER:PTN000383724
UniProtKB:Q9UPY3

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0034246
FB:FBgn0039016
MGI:MGI:2177178
PANTHER:PTN000383724
PomBase:SPCC188.13c
TAIR:locus:2092409
WB:WBGene00000939

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0034246
FB:FBgn0039016
PANTHER:PTN000383724
PomBase:SPCC188.13c
TAIR:locus:2092409
UniProtKB:P84634
UniProtKB:Q9LXW7
UniProtKB:Q9SP32
WB:WBGene00000939

C

Seeded From UniProt

complete

enables

GO:0004525

ribonuclease III activity

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0034246
MGI:MGI:2177178
PANTHER:PTN000383724
TAIR:locus:2092409
UniProtKB:Q9UPY3
WB:WBGene00000939

F

Seeded From UniProt

complete

involved_in

GO:0090305

nucleic acid phosphodiester bond hydrolysis

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0004519

P

Seeded From UniProt

complete

involved_in

GO:0090305

nucleic acid phosphodiester bond hydrolysis

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0004518

P

Seeded From UniProt

complete

involved_in

GO:0090501

RNA phosphodiester bond hydrolysis

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0004525

P

Seeded From UniProt

complete

involved_in

GO:0090501

RNA phosphodiester bond hydrolysis

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0004525

P

Seeded From UniProt

complete

involved_in

GO:0090502

RNA phosphodiester bond hydrolysis, endonucleolytic

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0004525

P

Seeded From UniProt

complete

involved_in

GO:0090502

RNA phosphodiester bond hydrolysis, endonucleolytic

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0016891

P

Seeded From UniProt

complete

involved_in

GO:0090502

RNA phosphodiester bond hydrolysis, endonucleolytic

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0004525

P

Seeded From UniProt

complete

involved_in

GO:0051607

defense response to virus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P84634
araport11:AT5G20320.1

P

Seeded From UniProt

complete

involved_in

GO:0051214

RNA virus induced gene silencing

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P84634
araport11:AT5G20320.1

P

Seeded From UniProt

complete

involved_in

GO:0010599

production of lsiRNA involved in RNA interference

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P84634
araport11:AT5G20320.1

P

Seeded From UniProt

complete

involved_in

GO:0010267

production of ta-siRNAs involved in RNA interference

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P84634
araport11:AT5G20320.1

P

Seeded From UniProt

complete

involved_in

GO:0010216

maintenance of DNA methylation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P84634
araport11:AT5G20320.1

P

Seeded From UniProt

complete

involved_in

GO:0010050

vegetative phase change

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P84634
araport11:AT5G20320.1

P

Seeded From UniProt

complete

involved_in

GO:0009616

virus induced gene silencing

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P84634
araport11:AT5G20320.1

P

Seeded From UniProt

complete

involved_in

GO:0006353

DNA-templated transcription, termination

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P84634
araport11:AT5G20320.1

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P84634
araport11:AT5G20320.1

C

Seeded From UniProt

complete

enables

GO:0003676

nucleic acid binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR011545

F

Seeded From UniProt

complete

enables

GO:0004525

ribonuclease III activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000999
InterPro:IPR036389

F

Seeded From UniProt

complete

enables

GO:0005524

ATP binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR011545

F

Seeded From UniProt

complete

involved_in

GO:0006396

RNA processing

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000999
InterPro:IPR036389

P

Seeded From UniProt

complete

enables

GO:0016891

endoribonuclease activity, producing 5'-phosphomonoesters

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR005034

F

Seeded From UniProt

complete

enables

GO:0005524

ATP binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0067

F

Seeded From UniProt

complete

enables

GO:0003723

RNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0694

F

Seeded From UniProt

complete

enables

GO:0046872

metal ion binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0479

F

Seeded From UniProt

complete

enables

GO:0004519

endonuclease activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0255

F

Seeded From UniProt

complete

enables

GO:0000166

nucleotide binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0547

F

Seeded From UniProt

complete

enables

GO:0004518

nuclease activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0540

F

Seeded From UniProt

complete

involved_in

GO:0031047

gene silencing by RNA

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0943

P

Seeded From UniProt

complete

enables

GO:0016787

hydrolase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0378

F

Seeded From UniProt

complete

enables

GO:0004386

helicase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0347

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

edit table

Notes

References

See Help:References for how to manage references in GONUTS.

  1. ↑ 1.0 1.1 1.2 Liu, B et al. (2007) Oryza sativa dicer-like4 reveals a key role for small interfering RNA silencing in plant development. Plant Cell 19 2705-18 PubMed GONUTS page
  2. ↑ Nagasaki, H et al. (2007) The small interfering RNA production pathway is required for shoot meristem initiation in rice. Proc. Natl. Acad. Sci. U.S.A. 104 14867-71 PubMed GONUTS page
  3. ↑ 3.0 3.1 3.2 3.3 3.4 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
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