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MOUSE:WHRN

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Species (Taxon ID) Mus musculus (Mouse). (10090)
Gene Name(s) Dfnb31 (synonyms: Kiaa1526, Whrn)
Protein Name(s) Whirlin
External Links
UniProt Q80VW5
EMBL AY739114
AY739115
AY739116
AY739117
AY739118
AY739119
AY739120
AY739121
AY739122
HQ148552
HQ148553
AK157955
AL683828
AL683828
AL683828
AL683828
AL683828
AK122523
CCDS CCDS18255.1
CCDS18256.1
CCDS18257.1
CCDS38778.1
RefSeq NP_001008791.1
NP_001008792.1
NP_001008793.1
NP_001263300.1
NP_082916.1
UniGene Mm.300397
ProteinModelPortal Q80VW5
SMR Q80VW5
IntAct Q80VW5
MINT MINT-1895268
PhosphoSite Q80VW5
PaxDb Q80VW5
PRIDE Q80VW5
Ensembl ENSMUST00000063650
ENSMUST00000063672
ENSMUST00000084510
ENSMUST00000095037
ENSMUST00000095038
ENSMUST00000102867
ENSMUST00000107393
ENSMUST00000119294
GeneID 73750
KEGG mmu:73750
UCSC uc008tgf.1
uc008tgg.1
uc008tgh.1
uc008tgi.1
uc008tgj.1
uc008tgk.1
uc008tgm.1
uc008tgn.1
uc008tgp.1
CTD 73750
MGI MGI:2682003
eggNOG NOG291372
GeneTree ENSGT00530000063178
HOVERGEN HBG056634
InParanoid Q80VW5
OMA APQNRSP
OrthoDB EOG7J9VQG
PhylomeDB Q80VW5
TreeFam TF325033
NextBio 338987
PRO PR:Q80VW5
Proteomes UP000000589
Bgee Q80VW5
CleanEx MM_WHRN
ExpressionAtlas Q80VW5
Genevestigator Q80VW5
GO GO:0005884
GO:0005929
GO:0005737
GO:0030426
GO:1990075
GO:0032391
GO:0002142
GO:0032420
GO:0032421
GO:0060122
GO:0010628
GO:0001895
GO:0050953
GO:0007605
Gene3D 2.30.42.10
InterPro IPR001478
Pfam PF00595
SMART SM00228
SUPFAM SSF50156
PROSITE PS50106

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:1990227

paranodal junction maintenance

PMID:24011083[1]

ECO:0000315

P

Figure 3 shows that sciatic nerves with whirlin mutants at various stages of development show abnormal paranodal formation compared to the wild type at the same stages of development.

complete
CACAO 8639

GO:0021694

cerebellar Purkinje cell layer formation

PMID:24011083[1]

ECO:0000315

P

In Figure 5, Purkinje cells with whirlin knockout mutations show abnormal axonal growths that are not present on the wild type cells.

complete
CACAO 8640

involved_in

GO:0001895

retina homeostasis

PMID:20502675[2]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0002141

stereocilia ankle link

PMID:20502675[2]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:1990075

periciliary membrane compartment

PMID:20502675[2]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0050910

detection of mechanical stimulus involved in sensory perception of sound

PMID:20502675[2]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:1990696

USH2 complex

PMID:20502675[2]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

colocalizes_with

GO:0043025

neuronal cell body

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q810W9

C

Seeded From UniProt

complete

colocalizes_with

GO:0001917

photoreceptor inner segment

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q810W9

C

Seeded From UniProt

complete

involved_in

GO:0021694

cerebellar Purkinje cell layer formation

PMID:24011083[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:1990227

paranodal junction maintenance

PMID:24011083[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0060122

inner ear receptor cell stereocilium organization

PMID:17326148[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0060122

inner ear receptor cell stereocilium organization

PMID:12124769[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0032420

stereocilium

PMID:15590698[5]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0032420

stereocilium

PMID:15590699[6]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0032420

stereocilium

PMID:15654330[7]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0060088

auditory receptor cell stereocilium organization

PMID:21873635[8]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:2682003
PANTHER:PTN000563362

P

Seeded From UniProt

complete

part_of

GO:0032426

stereocilium tip

PMID:21873635[8]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:2682003
PANTHER:PTN000563297

C

Seeded From UniProt

complete

part_of

GO:0032420

stereocilium

PMID:21873635[8]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:1919338
MGI:MGI:2682003
PANTHER:PTN000563297
RGD:1303329
RGD:631330

C

Seeded From UniProt

complete

colocalizes_with

GO:0032391

photoreceptor connecting cilium

PMID:21873635[8]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:2682003
PANTHER:PTN000563297
RGD:631330

C

Seeded From UniProt

complete

involved_in

GO:0007605

sensory perception of sound

PMID:21873635[8]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:1919338
MGI:MGI:2682003
PANTHER:PTN000563297
UniProtKB:Q9P202
UniProtKB:Q9Y6N9

P

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

PMID:21873635[8]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:1919338
PANTHER:PTN001136696
RGD:1303329

C

Seeded From UniProt

complete

part_of

GO:0002142

stereocilia ankle link complex

PMID:21873635[8]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:2682003
PANTHER:PTN000563297

C

Seeded From UniProt

complete

part_of

GO:0002141

stereocilia ankle link

PMID:21873635[8]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:2682003
MGI:MGI:3608325
PANTHER:PTN000563297

C

Seeded From UniProt

complete

colocalizes_with

GO:0001917

photoreceptor inner segment

PMID:21873635[8]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:1919338
MGI:MGI:2682003
PANTHER:PTN000563297
RGD:1303329
RGD:631330

C

Seeded From UniProt

complete

part_of

GO:1990696

USH2 complex

PMID:25406310[9]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:1990075

periciliary membrane compartment

PMID:24334608[10]

ECO:0000314

direct assay evidence used in manual assertion

C

part_of:(CL:0010009)

Seeded From UniProt

complete

part_of

GO:1990075

periciliary membrane compartment

PMID:21212183[11]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0060088

auditory receptor cell stereocilium organization

PMID:27117407[12]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:4432119

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0050953

sensory perception of light stimulus

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9P202

P

Seeded From UniProt

complete

enables

GO:0046982

protein heterodimerization activity

PMID:25406310[9]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:E9Q9W7

F

Seeded From UniProt

complete

part_of

GO:0045202

synapse

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:631330

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045184

establishment of protein localization

PMID:24334608[10]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:1857090
MGI:MGI:4462398

P

  • occurs_in:(EMAPA:17597)
  • occurs_in:(CL:0000589)
  • transports_or_maintains_localization_of:(UniProtKB:E9Q9W7)|occurs_in(EMAPA:17597)
  • occurs_in:(CL:0000601)
  • transports_or_maintains_localization_of:(UniProtKB:E9Q9W7)

Seeded From UniProt

complete

part_of

GO:0043198

dendritic shaft

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:631330

C

Seeded From UniProt

complete

part_of

GO:0043025

neuronal cell body

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:631330

C

Seeded From UniProt

complete

colocalizes_with

GO:0043025

neuronal cell body

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:631330

C

Seeded From UniProt

complete

enables

GO:0042803

protein homodimerization activity

PMID:25406310[9]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:Q80VW5

F

Seeded From UniProt

complete

part_of

GO:0036064

ciliary basal body

PMID:17906286[13]

ECO:0000314

direct assay evidence used in manual assertion

C

part_of:(EMAPA:17168)|part_of:(EMAPA:17168)

Seeded From UniProt

complete

part_of

GO:0032426

stereocilium tip

PMID:24334608[10]

ECO:0000314

direct assay evidence used in manual assertion

C

  • part_of:(EMAPA:17597)
  • part_of:(CL:0000589)|part_of:(EMAPA:17597)
  • part_of:(CL:0000601)

Seeded From UniProt

complete

part_of

GO:0032426

stereocilium tip

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:631330

C

Seeded From UniProt

complete

part_of

GO:0032421

stereocilium bundle

PMID:20016102[14]

ECO:0000314

direct assay evidence used in manual assertion

C

part_of:(CL:0000589)

Seeded From UniProt

complete

part_of

GO:0032420

stereocilium

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:631330

C

Seeded From UniProt

complete

part_of

GO:0032391

photoreceptor connecting cilium

PMID:21212183[11]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0032391

photoreceptor connecting cilium

PMID:17906286[13]

ECO:0000314

direct assay evidence used in manual assertion

C

part_of:(EMAPA:17168)|part_of:(EMAPA:17168)

Seeded From UniProt

complete

colocalizes_with

GO:0032391

photoreceptor connecting cilium

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:631330

C

Seeded From UniProt

complete

part_of

GO:0030425

dendrite

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:631330

C

Seeded From UniProt

complete

part_of

GO:0030424

axon

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:631330

C

Seeded From UniProt

complete

enables

GO:0019904

protein domain specific binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:631330

F

Seeded From UniProt

complete

part_of

GO:0016020

membrane

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:631330

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0010628

positive regulation of gene expression

PMID:21212183[11]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0007605

sensory perception of sound

PMID:27117407[12]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:4432119

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0007605

sensory perception of sound

PMID:12833159[15]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:1857090

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0007605

sensory perception of sound

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9P202

P

Seeded From UniProt

complete

part_of

GO:0005929

cilium

PMID:12833159[15]

ECO:0000314

direct assay evidence used in manual assertion

C

  • part_of:(EMAPA:17286)
  • part_of:(CL:0000202)

Seeded From UniProt

complete

part_of

GO:0005884

actin filament

PMID:12833159[15]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9P202

C

Seeded From UniProt

complete

part_of

GO:0002142

stereocilia ankle link complex

PMID:17567809[16]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0002141

stereocilia ankle link

PMID:24334608[10]

ECO:0000314

direct assay evidence used in manual assertion

C

  • part_of:(EMAPA:17597)
  • part_of:(CL:0000589)|part_of:(EMAPA:17597)
  • part_of:(CL:0000601)

Seeded From UniProt

complete

part_of

GO:0002141

stereocilia ankle link

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:631330

C

Seeded From UniProt

complete

part_of

GO:0001917

photoreceptor inner segment

PMID:17906286[13]

ECO:0000314

direct assay evidence used in manual assertion

C

part_of:(EMAPA:17168)|part_of:(EMAPA:17168)

Seeded From UniProt

complete

colocalizes_with

GO:0001917

photoreceptor inner segment

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:631330

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0001895

retina homeostasis

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9P202

P

Seeded From UniProt

complete

involved_in

GO:0050953

sensory perception of light stimulus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9P202
ensembl:ENSP00000354623

P

Seeded From UniProt

complete

involved_in

GO:0007605

sensory perception of sound

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9P202
ensembl:ENSP00000354623

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9P202
ensembl:ENSP00000354623

C

Seeded From UniProt

complete

involved_in

GO:0001895

retina homeostasis

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9P202
ensembl:ENSP00000354623

P

Seeded From UniProt

complete

involved_in

GO:0007605

sensory perception of sound

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR033028

P

Seeded From UniProt

complete

involved_in

GO:0050953

sensory perception of light stimulus

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR033028

P

Seeded From UniProt

complete

part_of

GO:0030054

cell junction

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0965

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

involved_in

GO:0007605

sensory perception of sound

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-1009

P

Seeded From UniProt

complete

part_of

GO:0042995

cell projection

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0966

C

Seeded From UniProt

complete

part_of

GO:0045202

synapse

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0770
UniProtKB-SubCell:SL-0258

C

Seeded From UniProt

complete

part_of

GO:0001917

photoreceptor inner segment

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0457

C

Seeded From UniProt

complete

part_of

GO:0032420

stereocilium

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0302

C

Seeded From UniProt

complete

part_of

GO:0030426

growth cone

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0288

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 1.2 1.3 Green, JA et al. (2013) Whirlin, a cytoskeletal scaffolding protein, stabilizes the paranodal region and axonal cytoskeleton in myelinated axons. BMC Neurosci 14 96 PubMed GONUTS page
  2. 2.0 2.1 2.2 2.3 2.4 Yang, J et al. (2010) Ablation of whirlin long isoform disrupts the USH2 protein complex and causes vision and hearing loss. PLoS Genet. 6 e1000955 PubMed GONUTS page
  3. Mogensen, MM et al. (2007) The deaf mouse mutant whirler suggests a role for whirlin in actin filament dynamics and stereocilia development. Cell Motil. Cytoskeleton 64 496-508 PubMed GONUTS page
  4. Holme, RH et al. (2002) Elongation of hair cell stereocilia is defective in the mouse mutant whirler. J. Comp. Neurol. 450 94-102 PubMed GONUTS page
  5. Delprat, B et al. (2005) Myosin XVa and whirlin, two deafness gene products required for hair bundle growth, are located at the stereocilia tips and interact directly. Hum. Mol. Genet. 14 401-10 PubMed GONUTS page
  6. Kikkawa, Y et al. (2005) Mutant analysis reveals whirlin as a dynamic organizer in the growing hair cell stereocilium. Hum. Mol. Genet. 14 391-400 PubMed GONUTS page
  7. Belyantseva, IA et al. (2005) Myosin-XVa is required for tip localization of whirlin and differential elongation of hair-cell stereocilia. Nat. Cell Biol. 7 148-56 PubMed GONUTS page
  8. 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.7 8.8 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
  9. 9.0 9.1 9.2 Chen, Q et al. (2014) Whirlin and PDZ domain-containing 7 (PDZD7) proteins are both required to form the quaternary protein complex associated with Usher syndrome type 2. J. Biol. Chem. 289 36070-88 PubMed GONUTS page
  10. 10.0 10.1 10.2 10.3 Zou, J et al. (2014) Deletion of PDZD7 disrupts the Usher syndrome type 2 protein complex in cochlear hair cells and causes hearing loss in mice. Hum. Mol. Genet. 23 2374-90 PubMed GONUTS page
  11. 11.0 11.1 11.2 Zou, J et al. (2011) Whirlin replacement restores the formation of the USH2 protein complex in whirlin knockout photoreceptors. Invest. Ophthalmol. Vis. Sci. 52 2343-51 PubMed GONUTS page
  12. 12.0 12.1 Ebrahim, S et al. (2016) Alternative Splice Forms Influence Functions of Whirlin in Mechanosensory Hair Cell Stereocilia. Cell Rep 15 935-943 PubMed GONUTS page
  13. 13.0 13.1 13.2 Maerker, T et al. (2008) A novel Usher protein network at the periciliary reloading point between molecular transport machineries in vertebrate photoreceptor cells. Hum. Mol. Genet. 17 71-86 PubMed GONUTS page
  14. Grimsley-Myers, CM et al. (2009) The small GTPase Rac1 regulates auditory hair cell morphogenesis. J. Neurosci. 29 15859-69 PubMed GONUTS page
  15. 15.0 15.1 15.2 Mburu, P et al. (2003) Defects in whirlin, a PDZ domain molecule involved in stereocilia elongation, cause deafness in the whirler mouse and families with DFNB31. Nat. Genet. 34 421-8 PubMed GONUTS page
  16. Michalski, N et al. (2007) Molecular characterization of the ankle-link complex in cochlear hair cells and its role in the hair bundle functioning. J. Neurosci. 27 6478-88 PubMed GONUTS page