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MOUSE:WHRN
Contents
Species (Taxon ID) | Mus musculus (Mouse). (10090) | |
Gene Name(s) | Dfnb31 (synonyms: Kiaa1526, Whrn) | |
Protein Name(s) | Whirlin | |
External Links | ||
UniProt | Q80VW5 | |
EMBL | AY739114 AY739115 AY739116 AY739117 AY739118 AY739119 AY739120 AY739121 AY739122 HQ148552 HQ148553 AK157955 AL683828 AL683828 AL683828 AL683828 AL683828 AK122523 | |
CCDS | CCDS18255.1 CCDS18256.1 CCDS18257.1 CCDS38778.1 | |
RefSeq | NP_001008791.1 NP_001008792.1 NP_001008793.1 NP_001263300.1 NP_082916.1 | |
UniGene | Mm.300397 | |
ProteinModelPortal | Q80VW5 | |
SMR | Q80VW5 | |
IntAct | Q80VW5 | |
MINT | MINT-1895268 | |
PhosphoSite | Q80VW5 | |
PaxDb | Q80VW5 | |
PRIDE | Q80VW5 | |
Ensembl | ENSMUST00000063650 ENSMUST00000063672 ENSMUST00000084510 ENSMUST00000095037 ENSMUST00000095038 ENSMUST00000102867 ENSMUST00000107393 ENSMUST00000119294 | |
GeneID | 73750 | |
KEGG | mmu:73750 | |
UCSC | uc008tgf.1 uc008tgg.1 uc008tgh.1 uc008tgi.1 uc008tgj.1 uc008tgk.1 uc008tgm.1 uc008tgn.1 uc008tgp.1 | |
CTD | 73750 | |
MGI | MGI:2682003 | |
eggNOG | NOG291372 | |
GeneTree | ENSGT00530000063178 | |
HOVERGEN | HBG056634 | |
InParanoid | Q80VW5 | |
OMA | APQNRSP | |
OrthoDB | EOG7J9VQG | |
PhylomeDB | Q80VW5 | |
TreeFam | TF325033 | |
NextBio | 338987 | |
PRO | PR:Q80VW5 | |
Proteomes | UP000000589 | |
Bgee | Q80VW5 | |
CleanEx | MM_WHRN | |
ExpressionAtlas | Q80VW5 | |
Genevestigator | Q80VW5 | |
GO | GO:0005884 GO:0005929 GO:0005737 GO:0030426 GO:1990075 GO:0032391 GO:0002142 GO:0032420 GO:0032421 GO:0060122 GO:0010628 GO:0001895 GO:0050953 GO:0007605 | |
Gene3D | 2.30.42.10 | |
InterPro | IPR001478 | |
Pfam | PF00595 | |
SMART | SM00228 | |
SUPFAM | SSF50156 | |
PROSITE | PS50106 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
GO:1990227 |
paranodal junction maintenance |
ECO:0000315 |
P |
Figure 3 shows that sciatic nerves with whirlin mutants at various stages of development show abnormal paranodal formation compared to the wild type at the same stages of development. |
complete | |||||
GO:0021694 |
cerebellar Purkinje cell layer formation |
ECO:0000315 |
P |
In Figure 5, Purkinje cells with whirlin knockout mutations show abnormal axonal growths that are not present on the wild type cells. |
complete | |||||
involved_in |
GO:0001895 |
retina homeostasis |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0002141 |
stereocilia ankle link |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:1990075 |
periciliary membrane compartment |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0050910 |
detection of mechanical stimulus involved in sensory perception of sound |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:1990696 |
USH2 complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
colocalizes_with |
GO:0043025 |
neuronal cell body |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
colocalizes_with |
GO:0001917 |
photoreceptor inner segment |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0021694 |
cerebellar Purkinje cell layer formation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:1990227 |
paranodal junction maintenance |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0060122 |
inner ear receptor cell stereocilium organization |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0060122 |
inner ear receptor cell stereocilium organization |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0032420 |
stereocilium |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0032420 |
stereocilium |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0032420 |
stereocilium |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0060088 |
auditory receptor cell stereocilium organization |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:2682003 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0032426 |
stereocilium tip |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:2682003 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0032420 |
stereocilium |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:1919338 |
C |
Seeded From UniProt |
complete | ||
colocalizes_with |
GO:0032391 |
photoreceptor connecting cilium |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:2682003 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0007605 |
sensory perception of sound |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:1919338 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005886 |
plasma membrane |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:1919338 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0002142 |
stereocilia ankle link complex |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:2682003 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0002141 |
stereocilia ankle link |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:2682003 |
C |
Seeded From UniProt |
complete | ||
colocalizes_with |
GO:0001917 |
photoreceptor inner segment |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:1919338 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:1990696 |
USH2 complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:1990075 |
periciliary membrane compartment |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
part_of:(CL:0010009) |
Seeded From UniProt |
complete | ||
part_of |
GO:1990075 |
periciliary membrane compartment |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0060088 |
auditory receptor cell stereocilium organization |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:4432119 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0050953 |
sensory perception of light stimulus |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0046982 |
protein heterodimerization activity |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0045202 |
synapse |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:631330 |
C |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0045184 |
establishment of protein localization |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:1857090 |
P |
|
Seeded From UniProt |
complete | |
part_of |
GO:0043198 |
dendritic shaft |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:631330 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0043025 |
neuronal cell body |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:631330 |
C |
Seeded From UniProt |
complete | ||
colocalizes_with |
GO:0043025 |
neuronal cell body |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:631330 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0042803 |
protein homodimerization activity |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0036064 |
ciliary basal body |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
part_of:(EMAPA:17168)|part_of:(EMAPA:17168) |
Seeded From UniProt |
complete | ||
part_of |
GO:0032426 |
stereocilium tip |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
|
Seeded From UniProt |
complete | ||
part_of |
GO:0032426 |
stereocilium tip |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:631330 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0032421 |
stereocilium bundle |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
part_of:(CL:0000589) |
Seeded From UniProt |
complete | ||
part_of |
GO:0032420 |
stereocilium |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:631330 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0032391 |
photoreceptor connecting cilium |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0032391 |
photoreceptor connecting cilium |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
part_of:(EMAPA:17168)|part_of:(EMAPA:17168) |
Seeded From UniProt |
complete | ||
colocalizes_with |
GO:0032391 |
photoreceptor connecting cilium |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:631330 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0030425 |
dendrite |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:631330 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0030424 |
axon |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:631330 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0019904 |
protein domain specific binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:631330 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0016020 |
membrane |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:631330 |
C |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0010628 |
positive regulation of gene expression |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0007605 |
sensory perception of sound |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:4432119 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0007605 |
sensory perception of sound |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:1857090 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0007605 |
sensory perception of sound |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005929 |
cilium |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
|
Seeded From UniProt |
complete | ||
part_of |
GO:0005884 |
actin filament |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0002142 |
stereocilia ankle link complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0002141 |
stereocilia ankle link |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
|
Seeded From UniProt |
complete | ||
part_of |
GO:0002141 |
stereocilia ankle link |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:631330 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0001917 |
photoreceptor inner segment |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
part_of:(EMAPA:17168)|part_of:(EMAPA:17168) |
Seeded From UniProt |
complete | ||
colocalizes_with |
GO:0001917 |
photoreceptor inner segment |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:631330 |
C |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0001895 |
retina homeostasis |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0050953 |
sensory perception of light stimulus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9P202 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0007605 |
sensory perception of sound |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9P202 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9P202 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0001895 |
retina homeostasis |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9P202 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0007605 |
sensory perception of sound |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0050953 |
sensory perception of light stimulus |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0030054 |
cell junction |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007605 |
sensory perception of sound |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0042995 |
cell projection |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0045202 |
synapse |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0001917 |
photoreceptor inner segment |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0032420 |
stereocilium |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0030426 |
growth cone |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 1.3 Green, JA et al. (2013) Whirlin, a cytoskeletal scaffolding protein, stabilizes the paranodal region and axonal cytoskeleton in myelinated axons. BMC Neurosci 14 96 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 2.4 Yang, J et al. (2010) Ablation of whirlin long isoform disrupts the USH2 protein complex and causes vision and hearing loss. PLoS Genet. 6 e1000955 PubMed GONUTS page
- ↑ Mogensen, MM et al. (2007) The deaf mouse mutant whirler suggests a role for whirlin in actin filament dynamics and stereocilia development. Cell Motil. Cytoskeleton 64 496-508 PubMed GONUTS page
- ↑ Holme, RH et al. (2002) Elongation of hair cell stereocilia is defective in the mouse mutant whirler. J. Comp. Neurol. 450 94-102 PubMed GONUTS page
- ↑ Delprat, B et al. (2005) Myosin XVa and whirlin, two deafness gene products required for hair bundle growth, are located at the stereocilia tips and interact directly. Hum. Mol. Genet. 14 401-10 PubMed GONUTS page
- ↑ Kikkawa, Y et al. (2005) Mutant analysis reveals whirlin as a dynamic organizer in the growing hair cell stereocilium. Hum. Mol. Genet. 14 391-400 PubMed GONUTS page
- ↑ Belyantseva, IA et al. (2005) Myosin-XVa is required for tip localization of whirlin and differential elongation of hair-cell stereocilia. Nat. Cell Biol. 7 148-56 PubMed GONUTS page
- ↑ 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.7 8.8 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ 9.0 9.1 9.2 Chen, Q et al. (2014) Whirlin and PDZ domain-containing 7 (PDZD7) proteins are both required to form the quaternary protein complex associated with Usher syndrome type 2. J. Biol. Chem. 289 36070-88 PubMed GONUTS page
- ↑ 10.0 10.1 10.2 10.3 Zou, J et al. (2014) Deletion of PDZD7 disrupts the Usher syndrome type 2 protein complex in cochlear hair cells and causes hearing loss in mice. Hum. Mol. Genet. 23 2374-90 PubMed GONUTS page
- ↑ 11.0 11.1 11.2 Zou, J et al. (2011) Whirlin replacement restores the formation of the USH2 protein complex in whirlin knockout photoreceptors. Invest. Ophthalmol. Vis. Sci. 52 2343-51 PubMed GONUTS page
- ↑ 12.0 12.1 Ebrahim, S et al. (2016) Alternative Splice Forms Influence Functions of Whirlin in Mechanosensory Hair Cell Stereocilia. Cell Rep 15 935-943 PubMed GONUTS page
- ↑ 13.0 13.1 13.2 Maerker, T et al. (2008) A novel Usher protein network at the periciliary reloading point between molecular transport machineries in vertebrate photoreceptor cells. Hum. Mol. Genet. 17 71-86 PubMed GONUTS page
- ↑ Grimsley-Myers, CM et al. (2009) The small GTPase Rac1 regulates auditory hair cell morphogenesis. J. Neurosci. 29 15859-69 PubMed GONUTS page
- ↑ 15.0 15.1 15.2 Mburu, P et al. (2003) Defects in whirlin, a PDZ domain molecule involved in stereocilia elongation, cause deafness in the whirler mouse and families with DFNB31. Nat. Genet. 34 421-8 PubMed GONUTS page
- ↑ Michalski, N et al. (2007) Molecular characterization of the ankle-link complex in cochlear hair cells and its role in the hair bundle functioning. J. Neurosci. 27 6478-88 PubMed GONUTS page
a
c
d
e
p
- GO:1990227 ! paranodal junction maintenance
- GO:1990075 ! periciliary membrane compartment
- GO:0001917 ! photoreceptor inner segment
- GO:0032391 ! photoreceptor connecting cilium
- GO:0005886 ! plasma membrane
- GO:0010628 ! positive regulation of gene expression
- GO:0019904 ! protein domain specific binding
- GO:0046982 ! protein heterodimerization activity
- GO:0042803 ! protein homodimerization activity
s