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MOUSE:LN28A
Contents
Species (Taxon ID) | Mus musculus (Mouse). (10090) | |
Gene Name(s) | Lin28a (synonyms: Lin28, Tex17) | |
Protein Name(s) | Protein lin-28 homolog A
Lin-28A Testis-expressed protein 17 | |
External Links | ||
UniProt | Q8K3Y3 | |
EMBL | AF521097 BC068304 | |
CCDS | CCDS18761.1 | |
RefSeq | NP_665832.1 | |
UniGene | Mm.302567 | |
PDB | 3TRZ 3TS0 3TS2 | |
PDBsum | 3TRZ 3TS0 3TS2 | |
ProteinModelPortal | Q8K3Y3 | |
SMR | Q8K3Y3 | |
BioGrid | 219943 | |
DIP | DIP-48573N | |
IntAct | Q8K3Y3 | |
STRING | 10090.ENSMUSP00000050488 | |
iPTMnet | Q8K3Y3 | |
PhosphoSite | Q8K3Y3 | |
MaxQB | Q8K3Y3 | |
PaxDb | Q8K3Y3 | |
PRIDE | Q8K3Y3 | |
Ensembl | ENSMUST00000051674 | |
GeneID | 83557 | |
KEGG | mmu:83557 | |
UCSC | uc008vdw.1 | |
CTD | 79727 | |
MGI | MGI:1890546 | |
eggNOG | KOG3070 COG1278 | |
GeneTree | ENSGT00840000129853 | |
HOGENOM | HOG000047091 | |
HOVERGEN | HBG081922 | |
InParanoid | Q8K3Y3 | |
KO | K18754 | |
OMA | SGICKWF | |
OrthoDB | EOG72JWJ8 | |
PhylomeDB | Q8K3Y3 | |
TreeFam | TF316240 | |
Reactome | [www.reactome.org/content/detail/R-MMU-452723 R-MMU-452723] | |
PRO | PR:Q8K3Y3 | |
Proteomes | UP000000589 | |
Bgee | Q8K3Y3 | |
CleanEx | MM_LIN28 | |
ExpressionAtlas | Q8K3Y3 | |
Genevisible | Q8K3Y3 | |
GO | GO:0005737 GO:0000932 GO:0010494 GO:0005730 GO:0005634 GO:0003677 GO:0035198 GO:0003729 GO:0003723 GO:0031369 GO:0008270 GO:0007281 GO:0010587 GO:0010586 GO:0045686 GO:1901724 GO:0045666 GO:0045727 GO:0031054 GO:0060964 GO:0006355 GO:0031123 GO:0048863 GO:0019827 | |
Gene3D | 2.40.50.140 4.10.60.10 | |
InterPro | IPR011129 IPR002059 IPR012340 IPR001878 | |
Pfam | PF00313 PF00098 | |
PRINTS | PR00050 | |
SMART | SM00357 SM00343 | |
SUPFAM | SSF50249 SSF57756 | |
PROSITE | PS50158 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
GO:0071076 |
RNA 3' uridylation |
ECO:0000314 |
P |
Fig. 3Aa and 3Ab: When comparing Lin28a mutant with wildtype, it can be seen that Lin28a does bind the miRNA species in question, pri-let-7a. With both pri-let-7a and Lin28a present, the sharp band at pre-let-7a produced with mutant lin28a seen on the northern blot is abrogated and instead a smear can be seen in its place. In Fig. 3Ba, these species of varying lengths (cloned from HEK293T cells ectopically expressing pri-let-7a-1 and Lin28a) are sequenced showing 3' uridylation of an average of 14 U nucleotides. Called Lin28a in paper |
complete | |||||
GO:2000627 |
positive regulation of miRNA catabolic process |
ECO:0000315 |
P |
"Protein knockdown was carried out against human Lin28b in Huh7 cells and mouse Lin28a in mouse ESCs" Fig. S3 shows, with knocked down mouse Lin28a, there is a marked increase in accumulation of mature let7a species. Called mouse Lin28a in paper. |
complete | |||||
enables |
GO:0035198 |
miRNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:1990904 |
ribonucleoprotein complex |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005844 |
polysome |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:1905538 |
polysome binding |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:2000767 |
positive regulation of cytoplasmic translation |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0017148 |
negative regulation of translation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005791 |
rough endoplasmic reticulum |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0003723 |
RNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0035198 |
miRNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:1990825 |
sequence-specific mRNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0002151 |
G-quadruplex RNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:1903800 |
positive regulation of production of miRNAs involved in gene silencing by miRNA |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0051897 |
positive regulation of protein kinase B signaling |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032008 |
positive regulation of TOR signaling |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0071333 |
cellular response to glucose stimulus |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
occurs_in:(UBERON:0001134) |
Seeded From UniProt |
complete | ||
involved_in |
GO:1901724 |
positive regulation of cell proliferation involved in kidney development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0048863 |
stem cell differentiation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0048863 |
stem cell differentiation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0031054 |
pre-miRNA processing |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0031054 |
pre-miRNA processing |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0010587 |
miRNA catabolic process |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0010587 |
miRNA catabolic process |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0010494 |
cytoplasmic stress granule |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0003723 |
RNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003723 |
RNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0000932 |
P-body |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:2000767 |
positive regulation of cytoplasmic translation |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:1990904 |
ribonucleoprotein complex |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:1905538 |
polysome binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0060964 |
regulation of gene silencing by miRNA |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:2685973 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0045727 |
positive regulation of translation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0045686 |
negative regulation of glial cell differentiation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0045666 |
positive regulation of neuron differentiation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0035198 |
miRNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0035198 |
miRNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
occurs_in:(CL:0002322) |
Seeded From UniProt |
complete | ||
enables |
GO:0031369 |
translation initiation factor binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0031123 |
RNA 3'-end processing |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0031054 |
pre-miRNA processing |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
occurs_in:(CL:0002322) |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0031054 |
pre-miRNA processing |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0019827 |
stem cell population maintenance |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0010587 |
miRNA catabolic process |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0010586 |
miRNA metabolic process |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0010494 |
cytoplasmic stress granule |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0007281 |
germ cell development |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:99655 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0007281 |
germ cell development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005844 |
polysome |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005730 |
nucleolus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0003729 |
mRNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003723 |
RNA binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0000932 |
P-body |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0019827 |
stem cell population maintenance |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9H9Z2 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0010587 |
miRNA catabolic process |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9H9Z2 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0010494 |
cytoplasmic stress granule |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9H9Z2 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005844 |
polysome |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9H9Z2 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9H9Z2 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9H9Z2 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0003723 |
RNA binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9H9Z2 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0000932 |
P-body |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9H9Z2 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:2000767 |
positive regulation of cytoplasmic translation |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9H9Z2 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:1990904 |
ribonucleoprotein complex |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9H9Z2 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:1905538 |
polysome binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9H9Z2 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0031123 |
RNA 3'-end processing |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9H9Z2 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0031054 |
pre-miRNA processing |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9H9Z2 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0003676 |
nucleic acid binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR001878 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0008270 |
zinc ion binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0031047 |
gene silencing by RNA |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0046872 |
metal ion binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005783 |
endoplasmic reticulum |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0003723 |
RNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0010494 |
cytoplasmic stress granule |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005791 |
rough endoplasmic reticulum |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005730 |
nucleolus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0000932 |
P-body |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Heo, I et al. (2008) Lin28 mediates the terminal uridylation of let-7 precursor MicroRNA. Mol. Cell 32 276-84 PubMed GONUTS page
- ↑ Faehnle, CR et al. (2017) Multi-domain utilization by TUT4 and TUT7 in control of let-7 biogenesis. Nat. Struct. Mol. Biol. 24 658-665 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 Cho, J et al. (2012) LIN28A is a suppressor of ER-associated translation in embryonic stem cells. Cell 151 765-77 PubMed GONUTS page
- ↑ 4.0 4.1 4.2 O'Day, E et al. (2015) An RNA-binding Protein, Lin28, Recognizes and Remodels G-quartets in the MicroRNAs (miRNAs) and mRNAs It Regulates. J. Biol. Chem. 290 17909-22 PubMed GONUTS page
- ↑ 5.0 5.1 5.2 5.3 Zhu, H et al. (2011) The Lin28/let-7 axis regulates glucose metabolism. Cell 147 81-94 PubMed GONUTS page
- ↑ Urbach, A et al. (2014) Lin28 sustains early renal progenitors and induces Wilms tumor. Genes Dev. 28 971-82 PubMed GONUTS page
- ↑ 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.7 7.8 Rybak, A et al. (2008) A feedback loop comprising lin-28 and let-7 controls pre-let-7 maturation during neural stem-cell commitment. Nat. Cell Biol. 10 987-93 PubMed GONUTS page
- ↑ 8.0 8.1 8.2 8.3 Viswanathan, SR et al. (2008) Selective blockade of microRNA processing by Lin28. Science 320 97-100 PubMed GONUTS page
- ↑ Rybak, A et al. (2009) The let-7 target gene mouse lin-41 is a stem cell specific E3 ubiquitin ligase for the miRNA pathway protein Ago2. Nat. Cell Biol. 11 1411-20 PubMed GONUTS page
- ↑ 10.0 10.1 10.2 10.3 10.4 Polesskaya, A et al. (2007) Lin-28 binds IGF-2 mRNA and participates in skeletal myogenesis by increasing translation efficiency. Genes Dev. 21 1125-38 PubMed GONUTS page
- ↑ 11.0 11.1 11.2 Balzer, E et al. (2010) LIN28 alters cell fate succession and acts independently of the let-7 microRNA during neurogliogenesis in vitro. Development 137 891-900 PubMed GONUTS page
- ↑ 12.0 12.1 West, JA et al. (2009) A role for Lin28 in primordial germ-cell development and germ-cell malignancy. Nature 460 909-13 PubMed GONUTS page
- ↑ Moss, EG & Tang, L (2003) Conservation of the heterochronic regulator Lin-28, its developmental expression and microRNA complementary sites. Dev. Biol. 258 432-42 PubMed GONUTS page
- ↑ Hu, J et al. (2010) Mouse ZAR1-like (XM_359149) colocalizes with mRNA processing components and its dominant-negative mutant caused two-cell-stage embryonic arrest. Dev. Dyn. 239 407-24 PubMed GONUTS page
c
m
n
p
- GO:0000932 ! P-body
- GO:1903800 ! positive regulation of miRNA processing
- GO:2000767 ! positive regulation of cytoplasmic translation
- GO:0045727 ! positive regulation of translation
- GO:2000627 ! positive regulation of miRNA catabolic process
- GO:0045666 ! positive regulation of neuron differentiation
- GO:0032008 ! positive regulation of TOR signaling
- GO:1901724 ! positive regulation of cell proliferation involved in kidney development
- GO:0051897 ! positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction
- GO:0031054 ! pre-miRNA processing
r
s