GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

MOUSE:LN28A

From GONUTS
Jump to: navigation, search
Species (Taxon ID) Mus musculus (Mouse). (10090)
Gene Name(s) Lin28a (synonyms: Lin28, Tex17)
Protein Name(s) Protein lin-28 homolog A

Lin-28A Testis-expressed protein 17

External Links
UniProt Q8K3Y3
EMBL AF521097
BC068304
CCDS CCDS18761.1
RefSeq NP_665832.1
UniGene Mm.302567
PDB 3TRZ
3TS0
3TS2
PDBsum 3TRZ
3TS0
3TS2
ProteinModelPortal Q8K3Y3
SMR Q8K3Y3
BioGrid 219943
DIP DIP-48573N
IntAct Q8K3Y3
STRING 10090.ENSMUSP00000050488
iPTMnet Q8K3Y3
PhosphoSite Q8K3Y3
MaxQB Q8K3Y3
PaxDb Q8K3Y3
PRIDE Q8K3Y3
Ensembl ENSMUST00000051674
GeneID 83557
KEGG mmu:83557
UCSC uc008vdw.1
CTD 79727
MGI MGI:1890546
eggNOG KOG3070
COG1278
GeneTree ENSGT00840000129853
HOGENOM HOG000047091
HOVERGEN HBG081922
InParanoid Q8K3Y3
KO K18754
OMA SGICKWF
OrthoDB EOG72JWJ8
PhylomeDB Q8K3Y3
TreeFam TF316240
Reactome [www.reactome.org/content/detail/R-MMU-452723 R-MMU-452723]
PRO PR:Q8K3Y3
Proteomes UP000000589
Bgee Q8K3Y3
CleanEx MM_LIN28
ExpressionAtlas Q8K3Y3
Genevisible Q8K3Y3
GO GO:0005737
GO:0000932
GO:0010494
GO:0005730
GO:0005634
GO:0003677
GO:0035198
GO:0003729
GO:0003723
GO:0031369
GO:0008270
GO:0007281
GO:0010587
GO:0010586
GO:0045686
GO:1901724
GO:0045666
GO:0045727
GO:0031054
GO:0060964
GO:0006355
GO:0031123
GO:0048863
GO:0019827
Gene3D 2.40.50.140
4.10.60.10
InterPro IPR011129
IPR002059
IPR012340
IPR001878
Pfam PF00313
PF00098
PRINTS PR00050
SMART SM00357
SM00343
SUPFAM SSF50249
SSF57756
PROSITE PS50158

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0071076

RNA 3' uridylation

PMID:18951094[1]

ECO:0000314

P

Fig. 3Aa and 3Ab: When comparing Lin28a mutant with wildtype, it can be seen that Lin28a does bind the miRNA species in question, pri-let-7a. With both pri-let-7a and Lin28a present, the sharp band at pre-let-7a produced with mutant lin28a seen on the northern blot is abrogated and instead a smear can be seen in its place. In Fig. 3Ba, these species of varying lengths (cloned from HEK293T cells ectopically expressing pri-let-7a-1 and Lin28a) are sequenced showing 3' uridylation of an average of 14 U nucleotides. Called Lin28a in paper

complete
CACAO 12262

GO:2000627

positive regulation of miRNA catabolic process

PMID:18951094[1]

ECO:0000315

P

"Protein knockdown was carried out against human Lin28b in Huh7 cells and mouse Lin28a in mouse ESCs" Fig. S3 shows, with knocked down mouse Lin28a, there is a marked increase in accumulation of mature let7a species. Called mouse Lin28a in paper.

complete
CACAO 12263

enables

GO:0035198

miRNA binding

PMID:28671666[2]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:1990904

ribonucleoprotein complex

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q9H9Z2

C

Seeded From UniProt

complete

part_of

GO:0005844

polysome

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q9H9Z2

C

Seeded From UniProt

complete

enables

GO:1905538

polysome binding

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q9H9Z2

F

Seeded From UniProt

complete

involved_in

GO:2000767

positive regulation of cytoplasmic translation

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q9H9Z2

P

Seeded From UniProt

complete

involved_in

GO:0017148

negative regulation of translation

PMID:23102813[3]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005791

rough endoplasmic reticulum

PMID:23102813[3]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0003723

RNA binding

PMID:23102813[3]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0035198

miRNA binding

PMID:26045559[4]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:1990825

sequence-specific mRNA binding

PMID:26045559[4]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0002151

G-quadruplex RNA binding

PMID:26045559[4]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:1903800

positive regulation of production of miRNAs involved in gene silencing by miRNA

PMID:21962509[5]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0051897

positive regulation of protein kinase B signaling

PMID:21962509[5]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0032008

positive regulation of TOR signaling

PMID:21962509[5]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0071333

cellular response to glucose stimulus

PMID:21962509[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

occurs_in:(UBERON:0001134)

Seeded From UniProt

complete

involved_in

GO:1901724

positive regulation of cell proliferation involved in kidney development

PMID:24732380[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0048863

stem cell differentiation

PMID:18604195[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0048863

stem cell differentiation

PMID:18292307[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0031054

pre-miRNA processing

PMID:18604195[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0031054

pre-miRNA processing

PMID:18292307[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0010587

miRNA catabolic process

PMID:18604195[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0010587

miRNA catabolic process

PMID:18292307[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0010494

cytoplasmic stress granule

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q9H9Z2

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q9H9Z2

C

Seeded From UniProt

complete

enables

GO:0003723

RNA binding

PMID:18604195[7]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003723

RNA binding

PMID:18292307[8]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0000932

P-body

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q9H9Z2

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:2000767

positive regulation of cytoplasmic translation

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9H9Z2

P

Seeded From UniProt

complete

part_of

GO:1990904

ribonucleoprotein complex

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9H9Z2

C

Seeded From UniProt

complete

enables

GO:1905538

polysome binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9H9Z2

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0060964

regulation of gene silencing by miRNA

PMID:19898466[9]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:2685973

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045727

positive regulation of translation

PMID:17473174[10]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045686

negative regulation of glial cell differentiation

PMID:20179095[11]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045666

positive regulation of neuron differentiation

PMID:20179095[11]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0035198

miRNA binding

PMID:18604195[7]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0035198

miRNA binding

PMID:18604195[7]

ECO:0000314

direct assay evidence used in manual assertion

F

occurs_in:(CL:0002322)

Seeded From UniProt

complete

enables

GO:0031369

translation initiation factor binding

PMID:17473174[10]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:Q8JZQ9

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0031123

RNA 3'-end processing

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9H9Z2

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0031054

pre-miRNA processing

PMID:18604195[7]

ECO:0000314

direct assay evidence used in manual assertion

P

occurs_in:(CL:0002322)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0031054

pre-miRNA processing

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9H9Z2

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0019827

stem cell population maintenance

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9H9Z2

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0010587

miRNA catabolic process

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9H9Z2

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0010586

miRNA metabolic process

PMID:20179095[11]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0010494

cytoplasmic stress granule

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9H9Z2

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0007281

germ cell development

PMID:19578360[12]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:99655

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0007281

germ cell development

PMID:19578360[12]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005844

polysome

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9H9Z2

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:18604195[7]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:17473174[10]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:12798299[13]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:20014101[14]

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9H9Z2

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:18604195[7]

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9H9Z2

C

Seeded From UniProt

complete

part_of

GO:0005730

nucleolus

PMID:17473174[10]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9H9Z2

C

Seeded From UniProt

complete

enables

GO:0003729

mRNA binding

PMID:17473174[10]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003723

RNA binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9H9Z2

F

Seeded From UniProt

complete

part_of

GO:0000932

P-body

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9H9Z2

C

Seeded From UniProt

complete

involved_in

GO:0019827

stem cell population maintenance

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9H9Z2
ensembl:ENSP00000363314

P

Seeded From UniProt

complete

involved_in

GO:0010587

miRNA catabolic process

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9H9Z2
ensembl:ENSP00000363314

P

Seeded From UniProt

complete

part_of

GO:0010494

cytoplasmic stress granule

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9H9Z2
ensembl:ENSP00000363314

C

Seeded From UniProt

complete

part_of

GO:0005844

polysome

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9H9Z2
ensembl:ENSP00000363314

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9H9Z2
ensembl:ENSP00000363314

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9H9Z2
ensembl:ENSP00000363314

C

Seeded From UniProt

complete

enables

GO:0003723

RNA binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9H9Z2
ensembl:ENSP00000363314

F

Seeded From UniProt

complete

part_of

GO:0000932

P-body

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9H9Z2
ensembl:ENSP00000363314

C

Seeded From UniProt

complete

involved_in

GO:2000767

positive regulation of cytoplasmic translation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9H9Z2
ensembl:ENSP00000363314

P

Seeded From UniProt

complete

part_of

GO:1990904

ribonucleoprotein complex

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9H9Z2
ensembl:ENSP00000363314

C

Seeded From UniProt

complete

enables

GO:1905538

polysome binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9H9Z2
ensembl:ENSP00000363314

F

Seeded From UniProt

complete

involved_in

GO:0031123

RNA 3'-end processing

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9H9Z2
ensembl:ENSP00000363314

P

Seeded From UniProt

complete

involved_in

GO:0031054

pre-miRNA processing

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9H9Z2
ensembl:ENSP00000363314

P

Seeded From UniProt

complete

enables

GO:0003676

nucleic acid binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001878
InterPro:IPR002059
InterPro:IPR011129
InterPro:IPR036875

F

Seeded From UniProt

complete

enables

GO:0008270

zinc ion binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001878
InterPro:IPR036875

F

Seeded From UniProt

complete

involved_in

GO:0031047

gene silencing by RNA

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0943

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539

C

Seeded From UniProt

complete

enables

GO:0046872

metal ion binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0479

F

Seeded From UniProt

complete

part_of

GO:0005783

endoplasmic reticulum

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0256

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

enables

GO:0003723

RNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0694

F

Seeded From UniProt

complete

part_of

GO:0010494

cytoplasmic stress granule

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0496

C

Seeded From UniProt

complete

part_of

GO:0005791

rough endoplasmic reticulum

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0235

C

Seeded From UniProt

complete

part_of

GO:0005730

nucleolus

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0188

C

Seeded From UniProt

complete

part_of

GO:0000932

P-body

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0230

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 Heo, I et al. (2008) Lin28 mediates the terminal uridylation of let-7 precursor MicroRNA. Mol. Cell 32 276-84 PubMed GONUTS page
  2. Faehnle, CR et al. (2017) Multi-domain utilization by TUT4 and TUT7 in control of let-7 biogenesis. Nat. Struct. Mol. Biol. 24 658-665 PubMed GONUTS page
  3. 3.0 3.1 3.2 Cho, J et al. (2012) LIN28A is a suppressor of ER-associated translation in embryonic stem cells. Cell 151 765-77 PubMed GONUTS page
  4. 4.0 4.1 4.2 O'Day, E et al. (2015) An RNA-binding Protein, Lin28, Recognizes and Remodels G-quartets in the MicroRNAs (miRNAs) and mRNAs It Regulates. J. Biol. Chem. 290 17909-22 PubMed GONUTS page
  5. 5.0 5.1 5.2 5.3 Zhu, H et al. (2011) The Lin28/let-7 axis regulates glucose metabolism. Cell 147 81-94 PubMed GONUTS page
  6. Urbach, A et al. (2014) Lin28 sustains early renal progenitors and induces Wilms tumor. Genes Dev. 28 971-82 PubMed GONUTS page
  7. 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.7 7.8 Rybak, A et al. (2008) A feedback loop comprising lin-28 and let-7 controls pre-let-7 maturation during neural stem-cell commitment. Nat. Cell Biol. 10 987-93 PubMed GONUTS page
  8. 8.0 8.1 8.2 8.3 Viswanathan, SR et al. (2008) Selective blockade of microRNA processing by Lin28. Science 320 97-100 PubMed GONUTS page
  9. Rybak, A et al. (2009) The let-7 target gene mouse lin-41 is a stem cell specific E3 ubiquitin ligase for the miRNA pathway protein Ago2. Nat. Cell Biol. 11 1411-20 PubMed GONUTS page
  10. 10.0 10.1 10.2 10.3 10.4 Polesskaya, A et al. (2007) Lin-28 binds IGF-2 mRNA and participates in skeletal myogenesis by increasing translation efficiency. Genes Dev. 21 1125-38 PubMed GONUTS page
  11. 11.0 11.1 11.2 Balzer, E et al. (2010) LIN28 alters cell fate succession and acts independently of the let-7 microRNA during neurogliogenesis in vitro. Development 137 891-900 PubMed GONUTS page
  12. 12.0 12.1 West, JA et al. (2009) A role for Lin28 in primordial germ-cell development and germ-cell malignancy. Nature 460 909-13 PubMed GONUTS page
  13. Moss, EG & Tang, L (2003) Conservation of the heterochronic regulator Lin-28, its developmental expression and microRNA complementary sites. Dev. Biol. 258 432-42 PubMed GONUTS page
  14. Hu, J et al. (2010) Mouse ZAR1-like (XM_359149) colocalizes with mRNA processing components and its dominant-negative mutant caused two-cell-stage embryonic arrest. Dev. Dyn. 239 407-24 PubMed GONUTS page