GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

MOUSE:LIS1

From GONUTS
Jump to: navigation, search
Species (Taxon ID) Mus musculus (Mouse). (10090)
Gene Name(s) Pafah1b1 (synonyms: Lis-1, Lis1, Pafaha)
Protein Name(s) Platelet-activating factor acetylhydrolase IB subunit alpha (ECO:0000255 with HAMAP-Rule:MF_03141)

Lissencephaly-1 protein (ECO:0000255 with HAMAP-Rule:MF_03141) LIS-1 (ECO:0000255 with HAMAP-Rule:MF_03141) PAF acetylhydrolase 45 kDa subunit (ECO:0000255 with HAMAP-Rule:MF_03141) PAF-AH 45 kDa subunit (ECO:0000255 with HAMAP-Rule:MF_03141) PAF-AH alpha (ECO:0000255 with HAMAP-Rule:MF_03141) PAFAH alpha (ECO:0000255 with HAMAP-Rule:MF_03141)

External Links
UniProt P63005
EMBL U95116
U95120
U95119
U95120
U95119
L25109
AY189217
AY189218
BC014831
BC026141
CCDS CCDS25035.1
RefSeq NP_038653.1
UniGene Mm.397111
PDB 1UUJ
1VYH
PDBsum 1UUJ
1VYH
ProteinModelPortal P63005
SMR P63005
BioGrid 202013
DIP DIP-29555N
IntAct P63005
MINT MINT-267632
PhosphoSite P63005
REPRODUCTION-2DPAGE P63005
MaxQB P63005
PaxDb P63005
PRIDE P63005
Ensembl ENSMUST00000021091
ENSMUST00000102520
GeneID 18472
KEGG mmu:18472
UCSC uc007kce.2
CTD 5048
MGI MGI:109520
eggNOG COG2319
HOGENOM HOG000184015
HOVERGEN HBG006271
InParanoid P63005
KO K16794
OMA MKTLYAH
OrthoDB EOG7QZG9N
PhylomeDB P63005
TreeFam TF105741
Reactome REACT_196635
REACT_198961
REACT_207679
REACT_243078
REACT_244487
REACT_245720
REACT_256756
ChiTaRS Pafah1b1
EvolutionaryTrace P63005
NextBio 294162
PRO PR:P63005
Proteomes UP000000589
Bgee P63005
ExpressionAtlas P63005
Genevestigator P63005
GO GO:0000235
GO:0030424
GO:0005938
GO:0005813
GO:0005737
GO:0005829
GO:0070062
GO:0030426
GO:0005871
GO:0000776
GO:0005875
GO:0015630
GO:0031512
GO:0043025
GO:0005635
GO:0031965
GO:0048471
GO:0008017
GO:0051219
GO:0042803
GO:0001675
GO:0030036
GO:0008344
GO:0001667
GO:0048854
GO:0016477
GO:0021987
GO:0021895
GO:0021540
GO:0051660
GO:0000132
GO:0021766
GO:0021819
GO:0007611
GO:0016042
GO:0000226
GO:0031023
GO:0007067
GO:0046329
GO:0010977
GO:0007405
GO:0050885
GO:0001764
GO:0051081
GO:0007097
GO:0036035
GO:0045773
GO:0001961
GO:0045931
GO:0009306
GO:0032319
GO:0008090
GO:0017145
GO:0007268
GO:0019226
GO:0047496
Gene3D 2.130.10.10
HAMAP MF_03141
InterPro IPR017252
IPR020472
IPR006594
IPR013720
IPR015943
IPR001680
IPR019775
IPR017986
Pfam PF08513
PF00400
PIRSF PIRSF037647
PRINTS PR00320
SMART SM00667
SM00320
SUPFAM SSF50978
PROSITE PS50896
PS00678
PS50082
PS50294

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0061003

positive regulation of dendritic spine morphogenesis

PMID:23483716[1]

ECO:0000315

P

Figure 4

complete
CACAO 6967

GO:0044419

interspecies interaction between organisms

PMID:23483716[1]

ECO:0000315

P

Figure 6 - In the experiment it showed that Lis1+/− mutant mice exhibit asocial behaviour in a 3-chamber social interaction test. Whenever the mice had the wt gene they interacted normally but with the Lis1+/- they were much more antisocial; showing that Lis1 is involved with interspecies interaction.

complete
CACAO 6970

GO:0090176

microtubule cytoskeleton organization involved in establishment of planar polarity

PMID:23533177[2]

ECO:0000315

P

Figure 2

complete
CACAO 7252

GO:0042249

establishment of planar polarity of embryonic epithelium

PMID:23533177[2]

ECO:0000315

P

Figure 2

complete
CACAO 7253

GO:0070507

regulation of microtubule cytoskeleton organization

PMID:23533177[2]

ECO:0000315

P

Figure 2 & 7.

complete
CACAO 7254

GO:0060117

auditory receptor cell development

PMID:23533177[2]

ECO:0000315

P

Fig 3C,D. "Moreover, the apical surfaces of both hair cells and supporting cells in Lis1cKO-early cochleae were misshapen. Many hair cells adopted an oblong or irregular shape and the evenly spaced ‘hourglass’ shape of supporting cell apical domains was frequently jumbled and distorted (Fig. 3B)... the Lis1cKO-early sensory epithelium was disorganized, with hair cell nuclei frequently found at varying distances from the luminal surface (Fig. 3D). And Fig 8.

complete
CACAO 7255

GO:0040019

positive regulation of embryonic development

PMID:23533177[2]

ECO:0000315

P

Figure 2

complete
CACAO 7256

GO:0051130

positive regulation of cellular component organization

PMID:23533177[2]

ECO:0000315

P

Figure 3 - "Lis1 regulates cellular organization and junctional nectin localization in the organ of Corti"

complete
CACAO 7257

GO:0090102

cochlea development

PMID:23533177[2]

ECO:0000315

P

Figure 3 - "Lis1 regulates cellular organization and junctional nectin localization in the organ of Corti."

complete
CACAO 7258

GO:0043622

cortical microtubule organization

PMID:21844209[3]

ECO:0000315

P

Figure 4

complete
CACAO 7259

GO:0002934

desmosome organization

PMID:21844209[3]

ECO:0000315

P

Figure 6

complete
CACAO 7297

involved_in

GO:0043622

cortical microtubule organization

PMID:21844209[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0090102

cochlea development

PMID:23533177[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0051130

positive regulation of cellular component organization

PMID:23533177[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0040019

positive regulation of embryonic development

PMID:23533177[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0060117

auditory receptor cell development

PMID:23533177[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0070507

regulation of microtubule cytoskeleton organization

PMID:23533177[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0042249

establishment of planar polarity of embryonic epithelium

PMID:23533177[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0090176

microtubule cytoskeleton organization involved in establishment of planar polarity

PMID:23533177[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0061003

positive regulation of dendritic spine morphogenesis

PMID:23483716[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:2000574

regulation of microtubule motor activity

PMID:21873635[4]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000752736
UniProtKB:Q00664

P

Seeded From UniProt

complete

enables

GO:0070840

dynein complex binding

PMID:21873635[4]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0015754
PANTHER:PTN000752736
UniProtKB:P43033
UniProtKB:P43034

F

Seeded From UniProt

complete

enables

GO:0051010

microtubule plus-end binding

PMID:21873635[4]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000752736
SGD:S000005795

F

Seeded From UniProt

complete

involved_in

GO:0048854

brain morphogenesis

PMID:21873635[4]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000522053
UniProtKB:P43034
ZFIN:ZDB-GENE-040116-2
ZFIN:ZDB-GENE-040116-3

P

Seeded From UniProt

complete

involved_in

GO:0047496

vesicle transport along microtubule

PMID:21873635[4]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:109520
PANTHER:PTN000752736

P

Seeded From UniProt

complete

part_of

GO:0043025

neuronal cell body

PMID:21873635[4]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0015754
PANTHER:PTN000522053
RGD:620331

C

Seeded From UniProt

complete

part_of

GO:0043005

neuron projection

PMID:21873635[4]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000522053
RGD:620331

C

Seeded From UniProt

complete

involved_in

GO:0031023

microtubule organizing center organization

PMID:21873635[4]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000752736
UniProtKB:P43034

P

Seeded From UniProt

complete

involved_in

GO:0008090

retrograde axonal transport

PMID:21873635[4]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0015754
MGI:MGI:109520
PANTHER:PTN000522053

P

Seeded From UniProt

complete

involved_in

GO:0007097

nuclear migration

PMID:21873635[4]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0015754
PANTHER:PTN000752736
RGD:620331
UniProtKB:Q00664

P

Seeded From UniProt

complete

part_of

GO:0005881

cytoplasmic microtubule

PMID:21873635[4]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000752736
SGD:S000005795

C

Seeded From UniProt

complete

part_of

GO:0005875

microtubule associated complex

PMID:21873635[4]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:109520
PANTHER:PTN000752736
UniProtKB:P43034

C

Seeded From UniProt

complete

part_of

GO:0005635

nuclear envelope

PMID:21873635[4]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000752736
RGD:620331
UniProtKB:P43034

C

Seeded From UniProt

complete

part_of

GO:0000776

kinetochore

PMID:21873635[4]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0015754
PANTHER:PTN000752736
UniProtKB:P43034
WB:WBGene00003047

C

Seeded From UniProt

complete

involved_in

GO:0000132

establishment of mitotic spindle orientation

PMID:21873635[4]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000752736
UniProtKB:P43034
WB:WBGene00003047

P

Seeded From UniProt

complete

part_of

GO:0090724

central region of growth cone

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:620331

C

Seeded From UniProt

complete

enables

GO:0070840

dynein complex binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P43034

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0051661

maintenance of centrosome location

PMID:23533177[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2384060

P

  • occurs_in:(CL:0000589)
  • occurs_in:(EMAPA:19061)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0051660

establishment of centrosome localization

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:620331

P

Seeded From UniProt

complete

enables

GO:0051219

phosphoprotein binding

PMID:14578885[5]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P97318

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0051081

nuclear envelope disassembly

PMID:18809722[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2384054

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0050885

neuromuscular process controlling balance

PMID:10541472[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2384054

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0050885

neuromuscular process controlling balance

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P43034

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0048854

brain morphogenesis

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P43034

P

Seeded From UniProt

complete

part_of

GO:0048471

perinuclear region of cytoplasm

PMID:14578885[5]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0047496

vesicle transport along microtubule

PMID:16107726[8]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:1914453
MGI:MGI:1932915

P

occurs_in:(CL:0000057)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0046329

negative regulation of JNK cascade

PMID:22073305[9]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:1100089

P

regulates_o_occurs_in:(CL:0000092)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045931

positive regulation of mitotic cell cycle

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:620331

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045773

positive regulation of axon extension

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:620331

P

Seeded From UniProt

complete

enables

GO:0045505

dynein intermediate chain binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:620331

F

Seeded From UniProt

complete

enables

GO:0044877

protein-containing complex binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:620331

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0043087

regulation of GTPase activity

PMID:14507966[10]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2384054

P

Seeded From UniProt

complete

part_of

GO:0043025

neuronal cell body

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:620331

C

Seeded From UniProt

complete

part_of

GO:0043005

neuron projection

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:620331

C

Seeded From UniProt

complete

enables

GO:0042803

protein homodimerization activity

PMID:11344260[11]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P63005

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0036035

osteoclast development

PMID:22073305[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

results_in_development_of:(CL:0000092)

Seeded From UniProt

complete

part_of

GO:0032420

stereocilium

PMID:23533177[2]

ECO:0000314

direct assay evidence used in manual assertion

C

  • part_of:(CL:0000589)
  • part_of:(EMAPA:17597)

Seeded From UniProt

complete

part_of

GO:0031982

vesicle

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:620331

C

Seeded From UniProt

complete

part_of

GO:0031514

motile cilium

PMID:17314247[12]

ECO:0000314

direct assay evidence used in manual assertion

C

  • part_of:(EMAPA:16853)
  • part_of:(CL:0000307)|part_of:(EMAPA:29043)
  • part_of:(CL:0000067)

Seeded From UniProt

complete

colocalizes_with

GO:0031252

cell leading edge

PMID:14691133[13]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0031023

microtubule organizing center organization

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P43034

P

Seeded From UniProt

complete

part_of

GO:0030426

growth cone

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:620331

C

Seeded From UniProt

complete

part_of

GO:0030424

axon

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:620331

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0030036

actin cytoskeleton organization

PMID:14507966[10]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2384054

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0021987

cerebral cortex development

PMID:18469343[14]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:1914453

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0021987

cerebral cortex development

PMID:11344260[11]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2387783

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0021987

cerebral cortex development

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P43034

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0021895

cerebral cortex neuron differentiation

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:620331

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0021819

layer formation in cerebral cortex

PMID:17330141[15]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:1340044

P

has_participant:(EMAPA:35588)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0021766

hippocampus development

PMID:17330141[15]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:1340044

P

results_in_development_of:(EMAPA:32845)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0021766

hippocampus development

PMID:10729324[16]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2384054

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0021540

corpus callosum morphogenesis

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P43034

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0019226

transmission of nerve impulse

PMID:17433713[17]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2387783

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0017145

stem cell division

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:620331

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0016477

cell migration

PMID:12629176[18]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2384054

P

Seeded From UniProt

complete

part_of

GO:0015630

microtubule cytoskeleton

PMID:13129914[19]

ECO:0000314

direct assay evidence used in manual assertion

C

part_of:(CL:0000018)

Seeded From UniProt

complete

colocalizes_with

GO:0015630

microtubule cytoskeleton

PMID:17314247[12]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0010977

negative regulation of neuron projection development

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:620331

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0009306

protein secretion

PMID:22073305[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

occurs_in:(CL:0000092)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0008344

adult locomotory behavior

PMID:10541472[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2384054

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0008344

adult locomotory behavior

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P43034

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0008090

retrograde axonal transport

PMID:11163259[20]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0008017

microtubule binding

PMID:11163259[20]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0008017

microtubule binding

GO_REF:0000008

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P43033

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0007611

learning or memory

PMID:10541472[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2384054

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0007405

neuroblast proliferation

PMID:12629176[18]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2384054

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0007268

chemical synaptic transmission

PMID:10729324[16]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2384054

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0007097

nuclear migration

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:620331

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0007017

microtubule-based process

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P43034

P

Seeded From UniProt

complete

part_of

GO:0005938

cell cortex

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P43034

C

Seeded From UniProt

complete

part_of

GO:0005875

microtubule associated complex

PMID:11163259[20]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005875

microtubule associated complex

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P43034

C

Seeded From UniProt

complete

part_of

GO:0005871

kinesin complex

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:620331

C

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:620331

C

Seeded From UniProt

complete

part_of

GO:0005813

centrosome

PMID:11163260[21]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005813

centrosome

PMID:11163259[20]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005813

centrosome

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P43034

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:12950100[22]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:12551946[23]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005635

nuclear envelope

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P43034

C

Seeded From UniProt

complete

part_of

GO:0005635

nuclear envelope

PMID:18809722[6]

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P63004

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0001961

positive regulation of cytokine-mediated signaling pathway

PMID:22073305[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0001764

neuron migration

PMID:16107726[8]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:1932915

P

  • results_in_movement_of:(CL:0000120)|occurs_in(EMAPA:19039)
  • results_in_movement_of:(CL:0000598)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0001764

neuron migration

PMID:12796778[24]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:894689

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0001764

neuron migration

PMID:9697693[25]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2384054

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0001764

neuron migration

PMID:15331402[26]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2384054

P

  • occurs_in:(EMAPA:16910)
  • results_in_movement_of:(CL:0000498)|occurs_in(EMAPA:16910)
  • results_in_movement_of:(CL:0000402)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0001764

neuron migration

PMID:14507966[10]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2384054

P

results_in_movement_of:(CL:0000120)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0001764

neuron migration

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P43034

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0001764

neuron migration

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:620331

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0001675

acrosome assembly

PMID:13129914[19]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2683481

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0001667

ameboidal-type cell migration

PMID:22073305[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

results_in_movement_of:(CL:0000092)

Seeded From UniProt

complete

part_of

GO:0000776

kinetochore

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P43034

C

Seeded From UniProt

complete

part_of

GO:0000235

astral microtubule

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P43034

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0000226

microtubule cytoskeleton organization

PMID:16107726[8]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:1932915

P

  • occurs_in:(EMAPA:19039)
  • occurs_in:(CL:0000117)|occurs_in:(CL:0000057)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0000226

microtubule cytoskeleton organization

PMID:22073305[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

occurs_in:(CL:0000091)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0000132

establishment of mitotic spindle orientation

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P43034

P

Seeded From UniProt

complete

part_of

GO:1904115

axon cytoplasm

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0008090

C

Seeded From UniProt

complete

part_of

GO:1904115

axon cytoplasm

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0008090

C

Seeded From UniProt

complete

enables

GO:0070840

dynein complex binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P43034
ensembl:ENSP00000380378

F

Seeded From UniProt

complete

involved_in

GO:0050885

neuromuscular process controlling balance

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P43034
ensembl:ENSP00000380378

P

Seeded From UniProt

complete

involved_in

GO:0048854

brain morphogenesis

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P43034
ensembl:ENSP00000380378

P

Seeded From UniProt

complete

involved_in

GO:0031023

microtubule organizing center organization

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P43034
ensembl:ENSP00000380378

P

Seeded From UniProt

complete

involved_in

GO:0021987

cerebral cortex development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P43034
ensembl:ENSP00000380378

P

Seeded From UniProt

complete

involved_in

GO:0021540

corpus callosum morphogenesis

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P43034
ensembl:ENSP00000380378

P

Seeded From UniProt

complete

involved_in

GO:0008344

adult locomotory behavior

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P43034
ensembl:ENSP00000380378

P

Seeded From UniProt

complete

involved_in

GO:0007017

microtubule-based process

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P43034
ensembl:ENSP00000380378

P

Seeded From UniProt

complete

part_of

GO:0005938

cell cortex

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P43034
ensembl:ENSP00000380378

C

Seeded From UniProt

complete

part_of

GO:0005875

microtubule associated complex

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P43034
ensembl:ENSP00000380378

C

Seeded From UniProt

complete

part_of

GO:0005813

centrosome

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P43034
ensembl:ENSP00000380378

C

Seeded From UniProt

complete

part_of

GO:0005635

nuclear envelope

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P43034
ensembl:ENSP00000380378

C

Seeded From UniProt

complete

involved_in

GO:0001764

neuron migration

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P43034
ensembl:ENSP00000380378

P

Seeded From UniProt

complete

part_of

GO:0000776

kinetochore

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P43034
ensembl:ENSP00000380378

C

Seeded From UniProt

complete

part_of

GO:0000235

astral microtubule

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P43034
ensembl:ENSP00000380378

C

Seeded From UniProt

complete

involved_in

GO:0000132

establishment of mitotic spindle orientation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P43034
ensembl:ENSP00000380378

P

Seeded From UniProt

complete

part_of

GO:0090724

central region of growth cone

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63004
ensembl:ENSRNOP00000003696

C

Seeded From UniProt

complete

involved_in

GO:0051660

establishment of centrosome localization

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63004
ensembl:ENSRNOP00000003696

P

Seeded From UniProt

complete

involved_in

GO:0045931

positive regulation of mitotic cell cycle

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63004
ensembl:ENSRNOP00000003696

P

Seeded From UniProt

complete

involved_in

GO:0045773

positive regulation of axon extension

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63004
ensembl:ENSRNOP00000003696

P

Seeded From UniProt

complete

enables

GO:0045505

dynein intermediate chain binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63004
ensembl:ENSRNOP00000003696

F

Seeded From UniProt

complete

enables

GO:0044877

protein-containing complex binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63004
ensembl:ENSRNOP00000003696

F

Seeded From UniProt

complete

part_of

GO:0043025

neuronal cell body

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63004
ensembl:ENSRNOP00000003696

C

Seeded From UniProt

complete

part_of

GO:0043005

neuron projection

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63004
ensembl:ENSRNOP00000003696

C

Seeded From UniProt

complete

part_of

GO:0031982

vesicle

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63004
ensembl:ENSRNOP00000003696

C

Seeded From UniProt

complete

part_of

GO:0030426

growth cone

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63004
ensembl:ENSRNOP00000003696

C

Seeded From UniProt

complete

part_of

GO:0030424

axon

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63004
ensembl:ENSRNOP00000003696

C

Seeded From UniProt

complete

involved_in

GO:0021895

cerebral cortex neuron differentiation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63004
ensembl:ENSRNOP00000003696

P

Seeded From UniProt

complete

involved_in

GO:0017145

stem cell division

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63004
ensembl:ENSRNOP00000003696

P

Seeded From UniProt

complete

involved_in

GO:0010977

negative regulation of neuron projection development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63004
ensembl:ENSRNOP00000003696

P

Seeded From UniProt

complete

involved_in

GO:0007420

brain development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63004
ensembl:ENSRNOP00000003696

P

Seeded From UniProt

complete

involved_in

GO:0007097

nuclear migration

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63004
ensembl:ENSRNOP00000003696

P

Seeded From UniProt

complete

part_of

GO:0005871

kinesin complex

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63004
ensembl:ENSRNOP00000003696

C

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63004
ensembl:ENSRNOP00000003696

C

Seeded From UniProt

complete

part_of

GO:0005635

nuclear envelope

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63004
ensembl:ENSRNOP00000003696

C

Seeded From UniProt

complete

involved_in

GO:0001764

neuron migration

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P63004
ensembl:ENSRNOP00000003696

P

Seeded From UniProt

complete

enables

GO:0070840

dynein complex binding

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000107004

F

Seeded From UniProt

complete

involved_in

GO:0000132

establishment of mitotic spindle orientation

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000107004

P

Seeded From UniProt

complete

involved_in

GO:0051012

microtubule sliding

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000107004

P

Seeded From UniProt

complete

part_of

GO:0005875

microtubule associated complex

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000107004

C

Seeded From UniProt

complete

involved_in

GO:0007399

nervous system development

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000107004

P

Seeded From UniProt

complete

involved_in

GO:0007017

microtubule-based process

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000107004

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000107004

C

Seeded From UniProt

complete

involved_in

GO:0007275

multicellular organism development

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0217

P

Seeded From UniProt

complete

involved_in

GO:0006629

lipid metabolic process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0443

P

Seeded From UniProt

complete

involved_in

GO:0016042

lipid catabolic process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0442

P

Seeded From UniProt

complete

involved_in

GO:0007399

nervous system development

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0524

P

Seeded From UniProt

complete

involved_in

GO:0030154

cell differentiation

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0221

P

Seeded From UniProt

complete

part_of

GO:0005874

microtubule

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0493

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539

C

Seeded From UniProt

complete

involved_in

GO:0007049

cell cycle

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0131

P

Seeded From UniProt

complete

involved_in

GO:0051301

cell division

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0132

P

Seeded From UniProt

complete

part_of

GO:0016020

membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0472

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963

C

Seeded From UniProt

complete

part_of

GO:0005856

cytoskeleton

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0206
UniProtKB-SubCell:SL-0090

C

Seeded From UniProt

complete

part_of

GO:0005819

spindle

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0251

C

Seeded From UniProt

complete

part_of

GO:0005815

microtubule organizing center

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0048

C

Seeded From UniProt

complete

part_of

GO:0031965

nuclear membrane

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0182

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 1.2 Sudarov, A et al. (2013) Lis1 controls dynamics of neuronal filopodia and spines to impact synaptogenesis and social behaviour. EMBO Mol Med 5 591-607 PubMed GONUTS page
  2. 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 Sipe, CW et al. (2013) Lis1 mediates planar polarity of auditory hair cells through regulation of microtubule organization. Development 140 1785-95 PubMed GONUTS page
  3. 3.0 3.1 3.2 Sumigray, KD et al. (2011) Lis1 is essential for cortical microtubule organization and desmosome stability in the epidermis. J. Cell Biol. 194 631-42 PubMed GONUTS page
  4. 4.00 4.01 4.02 4.03 4.04 4.05 4.06 4.07 4.08 4.09 4.10 4.11 4.12 4.13 4.14 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
  5. 5.0 5.1 Assadi, AH et al. (2003) Interaction of reelin signaling and Lis1 in brain development. Nat. Genet. 35 270-6 PubMed GONUTS page
  6. 6.0 6.1 Hebbar, S et al. (2008) Lis1 and Ndel1 influence the timing of nuclear envelope breakdown in neural stem cells. J. Cell Biol. 182 1063-71 PubMed GONUTS page
  7. 7.0 7.1 7.2 Paylor, R et al. () Impaired learning and motor behavior in heterozygous Pafah1b1 (Lis1) mutant mice. Learn. Mem. 6 521-37 PubMed GONUTS page
  8. 8.0 8.1 8.2 Sasaki, S et al. (2005) Complete loss of Ndel1 results in neuronal migration defects and early embryonic lethality. Mol. Cell. Biol. 25 7812-27 PubMed GONUTS page
  9. 9.0 9.1 9.2 9.3 9.4 9.5 Ye, S et al. (2011) LIS1 regulates osteoclast formation and function through its interactions with dynein/dynactin and Plekhm1. PLoS ONE 6 e27285 PubMed GONUTS page
  10. 10.0 10.1 10.2 Kholmanskikh, SS et al. (2003) Disregulated RhoGTPases and actin cytoskeleton contribute to the migration defect in Lis1-deficient neurons. J. Neurosci. 23 8673-81 PubMed GONUTS page
  11. 11.0 11.1 Cahana, A et al. (2001) Targeted mutagenesis of Lis1 disrupts cortical development and LIS1 homodimerization. Proc. Natl. Acad. Sci. U.S.A. 98 6429-34 PubMed GONUTS page
  12. 12.0 12.1 Pedersen, LB et al. (2007) The lissencephaly protein Lis1 is present in motile mammalian cilia and requires outer arm dynein for targeting to Chlamydomonas flagella. J. Cell. Sci. 120 858-67 PubMed GONUTS page
  13. Dujardin, DL et al. (2003) A role for cytoplasmic dynein and LIS1 in directed cell movement. J. Cell Biol. 163 1205-11 PubMed GONUTS page
  14. Pawlisz, AS et al. (2008) Lis1-Nde1-dependent neuronal fate control determines cerebral cortical size and lamination. Hum. Mol. Genet. 17 2441-55 PubMed GONUTS page
  15. 15.0 15.1 Zhang, G et al. (2007) The Pafah1b complex interacts with the reelin receptor VLDLR. PLoS ONE 2 e252 PubMed GONUTS page
  16. 16.0 16.1 Fleck, MW et al. (2000) Hippocampal abnormalities and enhanced excitability in a murine model of human lissencephaly. J. Neurosci. 20 2439-50 PubMed GONUTS page
  17. Valdés-Sánchez, L et al. (2007) Postnatal alterations of the inhibitory synaptic responses recorded from cortical pyramidal neurons in the Lis1/sLis1 mutant mouse. Mol. Cell. Neurosci. 35 220-9 PubMed GONUTS page
  18. 18.0 18.1 Gambello, MJ et al. (2003) Multiple dose-dependent effects of Lis1 on cerebral cortical development. J. Neurosci. 23 1719-29 PubMed GONUTS page
  19. 19.0 19.1 Nayernia, K et al. (2003) Inactivation of a testis-specific Lis1 transcript in mice prevents spermatid differentiation and causes male infertility. J. Biol. Chem. 278 48377-85 PubMed GONUTS page
  20. 20.0 20.1 20.2 20.3 Sasaki, S et al. (2000) A LIS1/NUDEL/cytoplasmic dynein heavy chain complex in the developing and adult nervous system. Neuron 28 681-96 PubMed GONUTS page
  21. Niethammer, M et al. (2000) NUDEL is a novel Cdk5 substrate that associates with LIS1 and cytoplasmic dynein. Neuron 28 697-711 PubMed GONUTS page
  22. Cahana, A et al. (2003) A study of the nature of embryonic lethality in LIS1-/- mice. Mol. Reprod. Dev. 66 134-42 PubMed GONUTS page
  23. Koizumi, H et al. (2003) Targeted disruption of intracellular type I platelet activating factor-acetylhydrolase catalytic subunits causes severe impairment in spermatogenesis. J. Biol. Chem. 278 12489-94 PubMed GONUTS page
  24. Toyo-oka, K et al. (2003) 14-3-3epsilon is important for neuronal migration by binding to NUDEL: a molecular explanation for Miller-Dieker syndrome. Nat. Genet. 34 274-85 PubMed GONUTS page
  25. Hirotsune, S et al. (1998) Graded reduction of Pafah1b1 (Lis1) activity results in neuronal migration defects and early embryonic lethality. Nat. Genet. 19 333-9 PubMed GONUTS page
  26. McManus, MF et al. (2004) Lis1 is necessary for normal non-radial migration of inhibitory interneurons. Am. J. Pathol. 165 775-84 PubMed GONUTS page