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MOUSE:LHX2

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Species (Taxon ID) Mus musculus (Mouse). (10090)
Gene Name(s) Lhx2
Protein Name(s) LIM/homeobox protein Lhx2

Homeobox protein LH-2 LIM homeobox protein 2

External Links
UniProt Q9Z0S2
EMBL AF124734
BC055741
CCDS CCDS16008.1
RefSeq NP_034840.1
UniGene Mm.142856
ProteinModelPortal Q9Z0S2
SMR Q9Z0S2
BioGrid 201155
PhosphoSite Q9Z0S2
PaxDb Q9Z0S2
PRIDE Q9Z0S2
Ensembl ENSMUST00000000253
GeneID 16870
KEGG mmu:16870
UCSC uc008jnk.1
CTD 9355
MGI MGI:96785
eggNOG NOG240987
GeneTree ENSGT00760000118921
HOGENOM HOG000034022
HOVERGEN HBG006262
InParanoid Q9Z0S2
KO K09373
OMA HECRSPS
PhylomeDB Q9Z0S2
TreeFam TF315442
NextBio 290834
PRO PR:Q9Z0S2
Proteomes UP000000589
Bgee Q9Z0S2
CleanEx MM_LHX2
ExpressionAtlas Q9Z0S2
Genevestigator Q9Z0S2
GO GO:0005622
GO:0005634
GO:0003682
GO:0001076
GO:0043565
GO:0008270
GO:0048646
GO:0048675
GO:0007411
GO:0007420
GO:0021987
GO:0009953
GO:0001942
GO:0045199
GO:0007498
GO:2000678
GO:0007399
GO:0001843
GO:0022008
GO:0030182
GO:0021772
GO:0045944
GO:0045893
GO:0060041
GO:0021537
GO:0021978
GO:0006366
Gene3D 1.10.10.60
2.10.110.10
InterPro IPR017970
IPR001356
IPR009057
IPR001781
Pfam PF00046
PF00412
SMART SM00389
SM00132
SUPFAM SSF46689
PROSITE PS00027
PS50071
PS00478
PS50023

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0045893

positive regulation of transcription, DNA-dependent

PMID:22734700[1]

ECO:0000315

P

Fig 4 shows that LHX2 positively regulates transcription of gene CYP19A.

complete
CACAO 6352

GO:0045892

negative regulation of transcription, DNA-dependent

PMID:22457488[2]

ECO:0000315

P

Fig 4 shows that in thalamic-projecting neurons, LHX2 regulates the expression of ROBO1 and ROBO2.

complete
CACAO 6353

GO:0007411

axon guidance

PMID:22457488[2]

ECO:0000315

P

Fig. 3 shows that normal levels of LHX2 in the thalamus regulate axon guidance.

complete
CACAO 6354

involved_in

GO:0021987

cerebral cortex development

PMID:26371318[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:2000179

positive regulation of neural precursor cell proliferation

PMID:26371318[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045944

positive regulation of transcription by RNA polymerase II

PMID:26371318[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:26371318[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0050768

negative regulation of neurogenesis

PMID:26371318[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0001228

DNA-binding transcription activator activity, RNA polymerase II-specific

PMID:26371318[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

occurs_at:(SO:0001952)

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:28053041[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0000978

RNA polymerase II proximal promoter sequence-specific DNA binding

PMID:28053041[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0050768

negative regulation of neurogenesis

PMID:28053041[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0021987

cerebral cortex development

PMID:28053041[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045814

negative regulation of gene expression, epigenetic

PMID:28053041[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0001228

DNA-binding transcription activator activity, RNA polymerase II-specific

PMID:7513049[5]

ECO:0000314

direct assay evidence used in manual assertion

F

occurs_at:(SO:0001952)

Seeded From UniProt

complete

enables

GO:0001228

DNA-binding transcription activator activity, RNA polymerase II-specific

PMID:7513049[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

occurs_at:(SO:0001952)

Seeded From UniProt

complete

involved_in

GO:0045944

positive regulation of transcription by RNA polymerase II

PMID:7513049[5]

ECO:0000314

direct assay evidence used in manual assertion

P

has_regulation_target:(NCBI_Gene:12640)

Seeded From UniProt

complete

enables

GO:0000978

RNA polymerase II proximal promoter sequence-specific DNA binding

PMID:7513049[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

has_regulation_target:(NCBI_Gene:1081)

Seeded From UniProt

complete

involved_in

GO:0007411

axon guidance

PMID:22457488[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045893

positive regulation of transcription, DNA-templated

PMID:22734700[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045893

positive regulation of transcription, DNA-templated

PMID:10593900[6]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045944

positive regulation of transcription by RNA polymerase II

PMID:21873635[7]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0267978
MGI:MGI:102673
MGI:MGI:1100513
MGI:MGI:1888519
MGI:MGI:96785
PANTHER:PTN000654232
UniProtKB:Q969G2
UniProtKB:Q9UBR4
WB:WBGene00000438
WB:WBGene00002988
WB:WBGene00003167
WB:WBGene00006654

P

Seeded From UniProt

complete

involved_in

GO:0030182

neuron differentiation

PMID:21873635[7]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0002023
FB:FBgn0267978
MGI:MGI:101776
MGI:MGI:102673
MGI:MGI:107792
MGI:MGI:1096343
MGI:MGI:1100513
MGI:MGI:1306803
MGI:MGI:1888519
MGI:MGI:96785
MGI:MGI:99783
PANTHER:PTN000654232
RGD:71076
UniProtKB:P53411
UniProtKB:Q90881
WB:WBGene00000438
WB:WBGene00002988
WB:WBGene00003000
WB:WBGene00003167
WB:WBGene00006654
ZFIN:ZDB-GENE-050114-2
ZFIN:ZDB-GENE-050114-3
ZFIN:ZDB-GENE-050417-210
ZFIN:ZDB-GENE-051220-1
ZFIN:ZDB-GENE-060728-1
ZFIN:ZDB-GENE-980526-131

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:21873635[7]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0267978
MGI:MGI:1096343
MGI:MGI:1100513
MGI:MGI:1306803
MGI:MGI:96785
MGI:MGI:99783
PANTHER:PTN000654232
RGD:71074
UniProtKB:O60663
UniProtKB:O97581
UniProtKB:P53411
UniProtKB:Q9UPM6
WB:WBGene00000438
WB:WBGene00002987
WB:WBGene00002988
WB:WBGene00003167

C

Seeded From UniProt

complete

enables

GO:0000981

DNA-binding transcription factor activity, RNA polymerase II-specific

PMID:21873635[7]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:1100513
MGI:MGI:1888519
MGI:MGI:96785
PANTHER:PTN000654232
UniProtKB:Q9UBR4

F

Seeded From UniProt

complete

enables

GO:0000977

RNA polymerase II regulatory region sequence-specific DNA binding

PMID:21873635[7]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0267978
MGI:MGI:1100513
MGI:MGI:1888519
MGI:MGI:96785
PANTHER:PTN000654232
WB:WBGene00000438
WB:WBGene00002987
WB:WBGene00006654

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:2000678

negative regulation of transcription regulatory region DNA binding

PMID:9697309[8]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:97168

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0060041

retina development in camera-type eye

PMID:19146846[9]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:97490

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0048675

axon extension

PMID:21857657[10]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0048646

anatomical structure formation involved in morphogenesis

PMID:11719201[11]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:1890208

P

results_in_formation_of:(EMAPA:17544)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045944

positive regulation of transcription by RNA polymerase II

PMID:19146846[9]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:97490

P

has_regulation_target:(MGI:MGI:1341840)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045944

positive regulation of transcription by RNA polymerase II

PMID:10431247[12]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:1342291

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045944

positive regulation of transcription by RNA polymerase II

PMID:24012369[13]

ECO:0000314

direct assay evidence used in manual assertion

P

  • occurs_in:(CL:0000723)
  • occurs_in:(CL:0000723)
  • occurs_in:(EMAPA:18771)
  • occurs_in:(EMAPA:18771)
  • has_regulation_target:(MGI:MGI:1202876)
  • has_regulation_target:(MGI:MGI:1202876)
  • has_regulation_target:(MGI:MGI:1202879)
  • has_regulation_target:(MGI:MGI:1202879)
  • has_regulation_target:(MGI:MGI:1891468)
  • has_regulation_target:(MGI:MGI:1891468)
  • has_regulation_target:(MGI:MGI:1888513)
  • has_regulation_target:(MGI:MGI:1888513)
  • has_regulation_target:(MGI:MGI:88329)
  • has_regulation_target:(MGI:MGI:88329)
  • has_regulation_target:(MGI:MGI:1889272)
  • has_regulation_target:(MGI:MGI:1889272)
  • has_regulation_target:(MGI:MGI:96615)
  • has_regulation_target:(MGI:MGI:96615)
  • has_regulation_target:(MGI:MGI:104750)
  • has_regulation_target:(MGI:MGI:104750)
  • has_regulation_target:(MGI:MGI:101972)
  • has_regulation_target:(MGI:MGI:101972)
  • has_regulation_target:(MGI:MGI:108559)
  • has_regulation_target:(MGI:MGI:108559)
  • has_regulation_target:(MGI:MGI:1919583)
  • has_regulation_target:(MGI:MGI:1919583)
  • has_regulation_target:(MGI:MGI:2446089)
  • has_regulation_target:(MGI:MGI:2446089)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045199

maintenance of epithelial cell apical/basal polarity

PMID:24012369[13]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:1926500,MGI:MGI:3772179

P

  • occurs_in:(EMAPA:18771)
  • occurs_in:(CL:0000723)

Seeded From UniProt

complete

enables

GO:0043565

sequence-specific DNA binding

PMID:15173589[14]

ECO:0000314

direct assay evidence used in manual assertion

F

has_input:(MGI:MGI:2661338)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0030182

neuron differentiation

PMID:15173589[14]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:1890208

P

  • occurs_in:(EMAPA:17606)
  • results_in_acquisition_of_features_of:(CL:0000207)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0022008

neurogenesis

PMID:18184563[15]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0021987

cerebral cortex development

PMID:19820705[16]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:4399044

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0021978

telencephalon regionalization

PMID:11719201[11]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:88177
MGI:MGI:88180

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0021978

telencephalon regionalization

PMID:11719201[11]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:1890208

P

has_participant:(EMAPA:16910)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0021772

olfactory bulb development

PMID:19820705[16]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:4399044

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0021537

telencephalon development

PMID:19820705[16]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:4399044

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0021537

telencephalon development

PMID:17493606[17]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:1890208

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0021537

telencephalon development

PMID:11719201[11]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:1890208

P

results_in_development_of:(EMAPA:16910)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0021537

telencephalon development

PMID:11165475[18]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:1890208

P

results_in_development_of:(EMAPA:17548)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0009953

dorsal/ventral pattern formation

PMID:14566948[19]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:1890208

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0009953

dorsal/ventral pattern formation

PMID:11165475[18]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:1890208

P

Seeded From UniProt

complete

enables

GO:0008134

transcription factor binding

PMID:17991461[20]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P70662

F

occurs_in:(EMAPA:17525)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0007498

mesoderm development

PMID:9247336[21]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:1890208

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0007420

brain development

PMID:15295034[22]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:1890208

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0007420

brain development

PMID:14566948[19]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:1890208

P

results_in_development_of:(EMAPA:16910)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0007411

axon guidance

PMID:17493606[17]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:1890208

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0007399

nervous system development

PMID:9247336[21]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:1890208

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:24012369[13]

ECO:0000314

direct assay evidence used in manual assertion

C

  • part_of:(EMAPA:18771)
  • part_of:(CL:0000723)

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:18076286[23]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0003682

chromatin binding

PMID:24012369[13]

ECO:0000314

direct assay evidence used in manual assertion

F

  • occurs_in:(EMAPA:18771)
  • occurs_in:(CL:0000723)

Seeded From UniProt

complete

enables

GO:0003682

chromatin binding

PMID:19146846[9]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0001942

hair follicle development

PMID:24012369[13]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:1926500,MGI:MGI:3772179

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0001843

neural tube closure

PMID:11719201[11]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:1890208

P

has_participant:(EMAPA:16530)

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001356
InterPro:IPR009057

F

Seeded From UniProt

complete

involved_in

GO:0006355

regulation of transcription, DNA-templated

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR017970

P

Seeded From UniProt

complete

enables

GO:0043565

sequence-specific DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR017970

F

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

Reactome:R-MMU-9011146
Reactome:R-MMU-9011082
Reactome:R-MMU-9011075

ECO:0000304

author statement supported by traceable reference used in manual assertion



C

Seeded From UniProt

complete

enables

GO:0046872

metal ion binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0479

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000037
GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0371
UniProtKB-KW:KW-0238

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 Honda, S et al. (2012) LIM-homeodomain transcription factor, Lhx2, is involved in transcriptional control of brain-specific promoter/exon 1f of the mouse aromatase gene. J. Neuroendocrinol. 24 1367-74 PubMed GONUTS page
  2. 2.0 2.1 2.2 Marcos-Mondéjar, P et al. (2012) The lhx2 transcription factor controls thalamocortical axonal guidance by specific regulation of robo1 and robo2 receptors. J. Neurosci. 32 4372-85 PubMed GONUTS page
  3. 3.0 3.1 3.2 3.3 3.4 3.5 Hsu, LC et al. (2015) Lhx2 regulates the timing of β-catenin-dependent cortical neurogenesis. Proc. Natl. Acad. Sci. U.S.A. 112 12199-204 PubMed GONUTS page
  4. 4.0 4.1 4.2 4.3 4.4 Muralidharan, B et al. (2017) LHX2 Interacts with the NuRD Complex and Regulates Cortical Neuron Subtype Determinants Fezf2 and Sox11. J. Neurosci. 37 194-203 PubMed GONUTS page
  5. 5.0 5.1 5.2 5.3 Roberson, MS et al. (1994) Activation of the glycoprotein hormone alpha-subunit promoter by a LIM-homeodomain transcription factor. Mol. Cell. Biol. 14 2985-93 PubMed GONUTS page
  6. Glenn, DJ & Maurer, RA (1999) MRG1 binds to the LIM domain of Lhx2 and may function as a coactivator to stimulate glycoprotein hormone alpha-subunit gene expression. J. Biol. Chem. 274 36159-67 PubMed GONUTS page
  7. 7.0 7.1 7.2 7.3 7.4 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
  8. Bendall, AJ et al. (1998) Protein complex formation between Msx1 and Lhx2 homeoproteins is incompatible with DNA binding activity. Differentiation 63 151-7 PubMed GONUTS page
  9. 9.0 9.1 9.2 Tétreault, N et al. (2009) The LIM homeobox transcription factor Lhx2 is required to specify the retina field and synergistically cooperates with Pax6 for Six6 trans-activation. Dev. Biol. 327 541-50 PubMed GONUTS page
  10. Sanuki, R et al. (2011) miR-124a is required for hippocampal axogenesis and retinal cone survival through Lhx2 suppression. Nat. Neurosci. 14 1125-34 PubMed GONUTS page
  11. 11.0 11.1 11.2 11.3 11.4 Monuki, ES et al. (2001) Patterning of the dorsal telencephalon and cerebral cortex by a roof plate-Lhx2 pathway. Neuron 32 591-604 PubMed GONUTS page
  12. Bach, I et al. (1999) RLIM inhibits functional activity of LIM homeodomain transcription factors via recruitment of the histone deacetylase complex. Nat. Genet. 22 394-9 PubMed GONUTS page
  13. 13.0 13.1 13.2 13.3 13.4 Folgueras, AR et al. (2013) Architectural niche organization by LHX2 is linked to hair follicle stem cell function. Cell Stem Cell 13 314-27 PubMed GONUTS page
  14. 14.0 14.1 Hirota, J & Mombaerts, P (2004) The LIM-homeodomain protein Lhx2 is required for complete development of mouse olfactory sensory neurons. Proc. Natl. Acad. Sci. U.S.A. 101 8751-5 PubMed GONUTS page
  15. Choi, PS et al. (2008) Members of the miRNA-200 family regulate olfactory neurogenesis. Neuron 57 41-55 PubMed GONUTS page
  16. 16.0 16.1 16.2 Chou, SJ et al. (2009) Lhx2 specifies regional fate in Emx1 lineage of telencephalic progenitors generating cerebral cortex. Nat. Neurosci. 12 1381-9 PubMed GONUTS page
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  18. 18.0 18.1 Bulchand, S et al. (2001) LIM-homeodomain gene Lhx2 regulates the formation of the cortical hem. Mech. Dev. 100 165-75 PubMed GONUTS page
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