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MOUSE:LHX2
Contents
Species (Taxon ID) | Mus musculus (Mouse). (10090) | |
Gene Name(s) | Lhx2 | |
Protein Name(s) | LIM/homeobox protein Lhx2
Homeobox protein LH-2 LIM homeobox protein 2 | |
External Links | ||
UniProt | Q9Z0S2 | |
EMBL | AF124734 BC055741 | |
CCDS | CCDS16008.1 | |
RefSeq | NP_034840.1 | |
UniGene | Mm.142856 | |
ProteinModelPortal | Q9Z0S2 | |
SMR | Q9Z0S2 | |
BioGrid | 201155 | |
PhosphoSite | Q9Z0S2 | |
PaxDb | Q9Z0S2 | |
PRIDE | Q9Z0S2 | |
Ensembl | ENSMUST00000000253 | |
GeneID | 16870 | |
KEGG | mmu:16870 | |
UCSC | uc008jnk.1 | |
CTD | 9355 | |
MGI | MGI:96785 | |
eggNOG | NOG240987 | |
GeneTree | ENSGT00760000118921 | |
HOGENOM | HOG000034022 | |
HOVERGEN | HBG006262 | |
InParanoid | Q9Z0S2 | |
KO | K09373 | |
OMA | HECRSPS | |
PhylomeDB | Q9Z0S2 | |
TreeFam | TF315442 | |
NextBio | 290834 | |
PRO | PR:Q9Z0S2 | |
Proteomes | UP000000589 | |
Bgee | Q9Z0S2 | |
CleanEx | MM_LHX2 | |
ExpressionAtlas | Q9Z0S2 | |
Genevestigator | Q9Z0S2 | |
GO | GO:0005622 GO:0005634 GO:0003682 GO:0001076 GO:0043565 GO:0008270 GO:0048646 GO:0048675 GO:0007411 GO:0007420 GO:0021987 GO:0009953 GO:0001942 GO:0045199 GO:0007498 GO:2000678 GO:0007399 GO:0001843 GO:0022008 GO:0030182 GO:0021772 GO:0045944 GO:0045893 GO:0060041 GO:0021537 GO:0021978 GO:0006366 | |
Gene3D | 1.10.10.60 2.10.110.10 | |
InterPro | IPR017970 IPR001356 IPR009057 IPR001781 | |
Pfam | PF00046 PF00412 | |
SMART | SM00389 SM00132 | |
SUPFAM | SSF46689 | |
PROSITE | PS00027 PS50071 PS00478 PS50023 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
GO:0045893 |
positive regulation of transcription, DNA-dependent |
ECO:0000315 |
P |
Fig 4 shows that LHX2 positively regulates transcription of gene CYP19A. |
complete | |||||
GO:0045892 |
negative regulation of transcription, DNA-dependent |
ECO:0000315 |
P |
Fig 4 shows that in thalamic-projecting neurons, LHX2 regulates the expression of ROBO1 and ROBO2. |
complete | |||||
GO:0007411 |
axon guidance |
ECO:0000315 |
P |
Fig. 3 shows that normal levels of LHX2 in the thalamus regulate axon guidance. |
complete | |||||
involved_in |
GO:0021987 |
cerebral cortex development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:2000179 |
positive regulation of neural precursor cell proliferation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0050768 |
negative regulation of neurogenesis |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0001228 |
DNA-binding transcription activator activity, RNA polymerase II-specific |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
occurs_at:(SO:0001952) |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0000978 |
RNA polymerase II proximal promoter sequence-specific DNA binding |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0050768 |
negative regulation of neurogenesis |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0021987 |
cerebral cortex development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045814 |
negative regulation of gene expression, epigenetic |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0001228 |
DNA-binding transcription activator activity, RNA polymerase II-specific |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
occurs_at:(SO:0001952) |
Seeded From UniProt |
complete | ||
enables |
GO:0001228 |
DNA-binding transcription activator activity, RNA polymerase II-specific |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
occurs_at:(SO:0001952) |
Seeded From UniProt |
complete | ||
involved_in |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
has_regulation_target:(NCBI_Gene:12640) |
Seeded From UniProt |
complete | ||
enables |
GO:0000978 |
RNA polymerase II proximal promoter sequence-specific DNA binding |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
has_regulation_target:(NCBI_Gene:1081) |
Seeded From UniProt |
complete | ||
involved_in |
GO:0007411 |
axon guidance |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045893 |
positive regulation of transcription, DNA-templated |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045893 |
positive regulation of transcription, DNA-templated |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0267978 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0030182 |
neuron differentiation |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0002023 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0267978 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0000981 |
DNA-binding transcription factor activity, RNA polymerase II-specific |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:1100513 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0000977 |
RNA polymerase II regulatory region sequence-specific DNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0267978 |
F |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:2000678 |
negative regulation of transcription regulatory region DNA binding |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:97168 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0060041 |
retina development in camera-type eye |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:97490 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0048675 |
axon extension |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0048646 |
anatomical structure formation involved in morphogenesis |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:1890208 |
P |
results_in_formation_of:(EMAPA:17544) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:97490 |
P |
has_regulation_target:(MGI:MGI:1341840) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:1342291 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
|
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0045199 |
maintenance of epithelial cell apical/basal polarity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:1926500,MGI:MGI:3772179 |
P |
|
Seeded From UniProt |
complete | |
enables |
GO:0043565 |
sequence-specific DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
has_input:(MGI:MGI:2661338) |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0030182 |
neuron differentiation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:1890208 |
P |
|
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0022008 |
neurogenesis |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0021987 |
cerebral cortex development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:4399044 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0021978 |
telencephalon regionalization |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:88177 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0021978 |
telencephalon regionalization |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:1890208 |
P |
has_participant:(EMAPA:16910) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0021772 |
olfactory bulb development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:4399044 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0021537 |
telencephalon development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:4399044 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0021537 |
telencephalon development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:1890208 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0021537 |
telencephalon development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:1890208 |
P |
results_in_development_of:(EMAPA:16910) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0021537 |
telencephalon development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:1890208 |
P |
results_in_development_of:(EMAPA:17548) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0009953 |
dorsal/ventral pattern formation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:1890208 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0009953 |
dorsal/ventral pattern formation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:1890208 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0008134 |
transcription factor binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
occurs_in:(EMAPA:17525) |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0007498 |
mesoderm development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:1890208 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0007420 |
brain development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:1890208 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0007420 |
brain development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:1890208 |
P |
results_in_development_of:(EMAPA:16910) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0007411 |
axon guidance |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:1890208 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0007399 |
nervous system development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:1890208 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
|
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0003682 |
chromatin binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
|
Seeded From UniProt |
complete | ||
enables |
GO:0003682 |
chromatin binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0001942 |
hair follicle development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:1926500,MGI:MGI:3772179 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0001843 |
neural tube closure |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:1890208 |
P |
has_participant:(EMAPA:16530) |
Seeded From UniProt |
complete | |
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0043565 |
sequence-specific DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005654 |
nucleoplasm |
Reactome:R-MMU-9011146 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
C |
Seeded From UniProt |
complete | |
enables |
GO:0046872 |
metal ion binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Honda, S et al. (2012) LIM-homeodomain transcription factor, Lhx2, is involved in transcriptional control of brain-specific promoter/exon 1f of the mouse aromatase gene. J. Neuroendocrinol. 24 1367-74 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 Marcos-Mondéjar, P et al. (2012) The lhx2 transcription factor controls thalamocortical axonal guidance by specific regulation of robo1 and robo2 receptors. J. Neurosci. 32 4372-85 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 3.3 3.4 3.5 Hsu, LC et al. (2015) Lhx2 regulates the timing of β-catenin-dependent cortical neurogenesis. Proc. Natl. Acad. Sci. U.S.A. 112 12199-204 PubMed GONUTS page
- ↑ 4.0 4.1 4.2 4.3 4.4 Muralidharan, B et al. (2017) LHX2 Interacts with the NuRD Complex and Regulates Cortical Neuron Subtype Determinants Fezf2 and Sox11. J. Neurosci. 37 194-203 PubMed GONUTS page
- ↑ 5.0 5.1 5.2 5.3 Roberson, MS et al. (1994) Activation of the glycoprotein hormone alpha-subunit promoter by a LIM-homeodomain transcription factor. Mol. Cell. Biol. 14 2985-93 PubMed GONUTS page
- ↑ Glenn, DJ & Maurer, RA (1999) MRG1 binds to the LIM domain of Lhx2 and may function as a coactivator to stimulate glycoprotein hormone alpha-subunit gene expression. J. Biol. Chem. 274 36159-67 PubMed GONUTS page
- ↑ 7.0 7.1 7.2 7.3 7.4 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Bendall, AJ et al. (1998) Protein complex formation between Msx1 and Lhx2 homeoproteins is incompatible with DNA binding activity. Differentiation 63 151-7 PubMed GONUTS page
- ↑ 9.0 9.1 9.2 Tétreault, N et al. (2009) The LIM homeobox transcription factor Lhx2 is required to specify the retina field and synergistically cooperates with Pax6 for Six6 trans-activation. Dev. Biol. 327 541-50 PubMed GONUTS page
- ↑ Sanuki, R et al. (2011) miR-124a is required for hippocampal axogenesis and retinal cone survival through Lhx2 suppression. Nat. Neurosci. 14 1125-34 PubMed GONUTS page
- ↑ 11.0 11.1 11.2 11.3 11.4 Monuki, ES et al. (2001) Patterning of the dorsal telencephalon and cerebral cortex by a roof plate-Lhx2 pathway. Neuron 32 591-604 PubMed GONUTS page
- ↑ Bach, I et al. (1999) RLIM inhibits functional activity of LIM homeodomain transcription factors via recruitment of the histone deacetylase complex. Nat. Genet. 22 394-9 PubMed GONUTS page
- ↑ 13.0 13.1 13.2 13.3 13.4 Folgueras, AR et al. (2013) Architectural niche organization by LHX2 is linked to hair follicle stem cell function. Cell Stem Cell 13 314-27 PubMed GONUTS page
- ↑ 14.0 14.1 Hirota, J & Mombaerts, P (2004) The LIM-homeodomain protein Lhx2 is required for complete development of mouse olfactory sensory neurons. Proc. Natl. Acad. Sci. U.S.A. 101 8751-5 PubMed GONUTS page
- ↑ Choi, PS et al. (2008) Members of the miRNA-200 family regulate olfactory neurogenesis. Neuron 57 41-55 PubMed GONUTS page
- ↑ 16.0 16.1 16.2 Chou, SJ et al. (2009) Lhx2 specifies regional fate in Emx1 lineage of telencephalic progenitors generating cerebral cortex. Nat. Neurosci. 12 1381-9 PubMed GONUTS page
- ↑ 17.0 17.1 Lakhina, V et al. (2007) Early thalamocortical tract guidance and topographic sorting of thalamic projections requires LIM-homeodomain gene Lhx2. Dev. Biol. 306 703-13 PubMed GONUTS page
- ↑ 18.0 18.1 Bulchand, S et al. (2001) LIM-homeodomain gene Lhx2 regulates the formation of the cortical hem. Mech. Dev. 100 165-75 PubMed GONUTS page
- ↑ 19.0 19.1 Vyas, A et al. (2003) Paleocortex is specified in mice in which dorsal telencephalic patterning is severely disrupted. J. Comp. Neurol. 466 545-53 PubMed GONUTS page
- ↑ Xu, X et al. (2007) Co-factors of LIM domains (Clims/Ldb/Nli) regulate corneal homeostasis and maintenance of hair follicle stem cells. Dev. Biol. 312 484-500 PubMed GONUTS page
- ↑ 21.0 21.1 Porter, FD et al. (1997) Lhx2, a LIM homeobox gene, is required for eye, forebrain, and definitive erythrocyte development. Development 124 2935-44 PubMed GONUTS page
- ↑ Remedios, R et al. (2004) LIM genes parcellate the embryonic amygdala and regulate its development. J. Neurosci. 24 6986-90 PubMed GONUTS page
- ↑ Kittappa, R et al. (2007) The foxa2 gene controls the birth and spontaneous degeneration of dopamine neurons in old age. PLoS Biol. 5 e325 PubMed GONUTS page
a
d
g
m
n
- GO:0050768 ! negative regulation of neurogenesis
- GO:2000678 ! negative regulation of transcription regulatory region DNA binding
- GO:0045814 ! negative regulation of gene expression, epigenetic
- GO:0045892 ! negative regulation of DNA-templated transcription
- GO:0007399 ! nervous system development
- GO:0001843 ! neural tube closure
- GO:0022008 ! neurogenesis
- GO:0030182 ! neuron differentiation
- GO:0005654 ! nucleoplasm
- GO:0005634 ! nucleus
p
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