GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
MOUSE:FOXA2
Contents
Species (Taxon ID) | Mus musculus (Mouse). (10090) | |
Gene Name(s) | Foxa2 (synonyms: Hnf3b, Tcf-3b, Tcf3b) | |
Protein Name(s) | Hepatocyte nuclear factor 3-beta
HNF-3-beta HNF-3B Forkhead box protein A2 | |
External Links | ||
UniProt | P35583 | |
EMBL | X74937 L10409 AL845297 U04197 | |
CCDS | CCDS16836.1 | |
PIR | B54258 | |
RefSeq | NP_001277994.1 NP_034576.2 | |
UniGene | Mm.938 | |
ProteinModelPortal | P35583 | |
SMR | P35583 | |
IntAct | P35583 | |
PhosphoSite | P35583 | |
MaxQB | P35583 | |
PRIDE | P35583 | |
DNASU | 15376 | |
Ensembl | ENSMUST00000047315 | |
GeneID | 15376 | |
KEGG | mmu:15376 | |
UCSC | uc008mta.1 | |
CTD | 3170 | |
MGI | MGI:1347476 | |
eggNOG | COG5025 | |
GeneTree | ENSGT00760000118904 | |
HOGENOM | HOG000231817 | |
HOVERGEN | HBG006621 | |
InParanoid | P35583 | |
KO | K08035 | |
TreeFam | TF316127 | |
Reactome | REACT_214529 | |
NextBio | 288030 | |
PRO | PR:P35583 | |
Proteomes | UP000000589 | |
Bgee | P35583 | |
CleanEx | MM_FOXA2 | |
ExpressionAtlas | P35583 | |
Genevestigator | P35583 | |
GO | GO:0005737 GO:0005634 GO:0003677 GO:0000978 GO:0003705 GO:0001205 GO:0001228 GO:0043565 GO:0003700 GO:0008344 GO:0048646 GO:0009653 GO:0009952 GO:0048468 GO:0021533 GO:0001708 GO:0016568 GO:0061448 GO:0071542 GO:0021904 GO:0009953 GO:0001705 GO:0031018 GO:0060441 GO:0001701 GO:0030324 GO:0060487 GO:2000971 GO:0010719 GO:0033132 GO:0045665 GO:0043433 GO:0000433 GO:0048665 GO:0007389 GO:0040019 GO:2000543 GO:0045666 GO:0045880 GO:0045944 GO:0000432 GO:0045945 GO:0045893 GO:0090009 GO:0030193 GO:0010468 GO:0061178 GO:0019216 GO:0019218 GO:2000976 GO:0006355 GO:0070741 GO:0023019 GO:0032525 GO:0006366 | |
Gene3D | 1.10.10.10 | |
InterPro | IPR013638 IPR018533 IPR001766 IPR018122 IPR011991 | |
Pfam | PF00250 PF08430 PF09354 | |
PRINTS | PR00053 | |
SMART | SM00339 | |
PROSITE | PS00657 PS00658 PS50039 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
GO:0060303 |
regulation of nucleosome density |
ECO:0000315 |
P |
In figure 5 b, there is decreased low Mnase-seq signal when FoxA2 is deleted. This effect is significant for the FoxA2 strong promoters only whereas it is marginal for the FoxA2 weak promoters. |
complete | |||||
involved_in |
GO:2000971 |
negative regulation of detection of glucose |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0061178 |
regulation of insulin secretion involved in cellular response to glucose stimulus |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0033132 |
negative regulation of glucokinase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0061987 |
negative regulation of transcription from RNA polymerase II promoter by glucose |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
has_regulation_target:(UniProtKB:P14246)|has_regulation_target:(UniProtKB:P52792) |
Seeded From UniProt |
complete | ||
involved_in |
GO:0000432 |
positive regulation of transcription from RNA polymerase II promoter by glucose |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
has_regulation_target:(UniProtKB:B2RUS7)|has_regulation_target:(UniProtKB:Q61743) |
Seeded From UniProt |
complete | ||
involved_in |
GO:2000543 |
positive regulation of gastrulation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0090009 |
primitive streak formation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045945 |
positive regulation of transcription by RNA polymerase III |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045893 |
positive regulation of transcription, DNA-templated |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0040019 |
positive regulation of embryonic development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0030154 |
cell differentiation |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000930906 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0009653 |
anatomical structure morphogenesis |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:1347476 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006357 |
regulation of transcription by RNA polymerase II |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0000659 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0000659 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0000981 |
DNA-binding transcription factor activity, RNA polymerase II-specific |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0000659 |
F |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0090009 |
primitive streak formation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:1857725 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0071542 |
dopaminergic neuron differentiation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:1857725 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0071542 |
dopaminergic neuron differentiation |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0061448 |
connective tissue development |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:1347472 |
P |
results_in_development_of:(EMAPA:18008) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0060487 |
lung epithelial cell differentiation |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:1347472 |
P |
|
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0060441 |
epithelial tube branching involved in lung morphogenesis |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:1347472 |
P |
occurs_in:(EMAPA:16728) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0048665 |
neuron fate specification |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:1347472 |
P |
|
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0048665 |
neuron fate specification |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:2176222,MGI:MGI:2177337 |
P |
|
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0048646 |
anatomical structure formation involved in morphogenesis |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:1347472 |
P |
results_in_formation_of:(EMAPA:18008) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0048646 |
anatomical structure formation involved in morphogenesis |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:99783 |
P |
results_in_formation_of:(EMAPA:16072) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0048468 |
cell development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:2177337,MGI:MGI:2664968 |
P |
|
Seeded From UniProt |
complete | |
enables |
GO:0046332 |
SMAD binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2808 |
F |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:95664 |
P |
has_regulation_target:(MGI:MGI:95674)|has_regulation_target:(MGI:MGI:95674) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
has_regulation_target:(MGI:MGI:87951)|has_regulation_target:(MGI:MGI:98865) |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
has_regulation_target:(MGI:MGI:1888519)|has_regulation_target:(MGI:MGI:1100513)|has_regulation_target:(MGI:MGI:1349451) |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
has_regulation_target:(MGI:MGI:98962) |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
|
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2808 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0045893 |
positive regulation of transcription, DNA-templated |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0045880 |
positive regulation of smoothened signaling pathway |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:1347472 |
P |
regulates_o_occurs_in:(EMAPA:16191) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0045666 |
positive regulation of neuron differentiation |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:1347476 |
P |
|
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0045666 |
positive regulation of neuron differentiation |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:1347472 |
P |
|
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0045666 |
positive regulation of neuron differentiation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:2177337 |
P |
|
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0045665 |
negative regulation of neuron differentiation |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:1347476 |
P |
|
Seeded From UniProt |
complete | |
enables |
GO:0044212 |
transcription regulatory region DNA binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0043565 |
sequence-specific DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
occurs_in:(EMAPA:16846) |
Seeded From UniProt |
complete | ||
enables |
GO:0043565 |
sequence-specific DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
has_input:(MGI:MGI:102851) |
Seeded From UniProt |
complete | ||
enables |
GO:0043565 |
sequence-specific DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
has_input:(MGI:MGI:98962) |
Seeded From UniProt |
complete | ||
enables |
GO:0043565 |
sequence-specific DNA binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2808 |
F |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0043433 |
negative regulation of DNA-binding transcription factor activity |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0032525 |
somite rostral/caudal axis specification |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:1857725 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0031018 |
endocrine pancreas development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:2177337,MGI:MGI:2664968 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0031018 |
endocrine pancreas development |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0030324 |
lung development |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:1347472 |
P |
results_in_development_of:(EMAPA:16728) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0030193 |
regulation of blood coagulation |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0030054 |
cell junction |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0023019 |
signal transduction involved in regulation of gene expression |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0021904 |
dorsal/ventral neural tube patterning |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:95841 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0021904 |
dorsal/ventral neural tube patterning |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:1347472 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0021904 |
dorsal/ventral neural tube patterning |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0021533 |
cell differentiation in hindbrain |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:1347476 |
P |
|
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0021533 |
cell differentiation in hindbrain |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:2176222,MGI:MGI:2177337 |
P |
|
Seeded From UniProt |
complete | |
enables |
GO:0019900 |
kinase binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2808 |
F |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0019218 |
regulation of steroid metabolic process |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
regulates_o_occurs_in:(EMAPA:16846) |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0019218 |
regulation of steroid metabolic process |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
regulates_o_occurs_in:(EMAPA:16846) |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0019216 |
regulation of lipid metabolic process |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
regulates_o_occurs_in:(EMAPA:16846)|regulates_o_occurs_in:(EMAPA:16846) |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0019216 |
regulation of lipid metabolic process |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0010719 |
negative regulation of epithelial to mesenchymal transition |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0010468 |
regulation of gene expression |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:1347472 |
P |
|
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0009953 |
dorsal/ventral pattern formation |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:99783 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0009952 |
anterior/posterior pattern specification |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:99783 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0009653 |
anatomical structure morphogenesis |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:95841 |
P |
has_participant:(EMAPA:16118)|has_participant:(EMAPA:16272) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0008344 |
adult locomotory behavior |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:1857725 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0007389 |
pattern specification process |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:95664 |
P |
occurs_in:(EMAPA:16058) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0007219 |
Notch signaling pathway |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0006357 |
regulation of transcription by RNA polymerase II |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2808 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005654 |
nucleoplasm |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
|
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
part_of:(EMAPA:16531)|part_of:(EMAPA:16191) |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
part_of:(EMAPA:16706)|part_of:(EMAPA:16728)|part_of:(EMAPA:16715)|part_of:(EMAPA:16846) |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2808 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
has_regulation_target:(MGI:MGI:98493) |
Seeded From UniProt |
complete | ||
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
has_regulation_target:(MGI:MGI:98962) |
Seeded From UniProt |
complete | ||
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2808 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0003690 |
double-stranded DNA binding |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:1890508 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0003690 |
double-stranded DNA binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2808 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0003677 |
DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
has_participant:(MGI:MGI:95664) |
Seeded From UniProt |
complete | ||
enables |
GO:0003677 |
DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0001708 |
cell fate specification |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0001705 |
ectoderm formation |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:99783 |
P |
results_in_formation_of:(EMAPA:16069) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0001701 |
in utero embryonic development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0001228 |
DNA-binding transcription activator activity, RNA polymerase II-specific |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0001228 |
DNA-binding transcription activator activity, RNA polymerase II-specific |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
has_regulation_target:(MGI:MGI:1888519) |
Seeded From UniProt |
complete | ||
enables |
GO:0001228 |
DNA-binding transcription activator activity, RNA polymerase II-specific |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2808 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0000981 |
DNA-binding transcription factor activity, RNA polymerase II-specific |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
has_regulation_target:(MGI:MGI:102851) |
Seeded From UniProt |
complete | ||
enables |
GO:0000981 |
DNA-binding transcription factor activity, RNA polymerase II-specific |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
|
Seeded From UniProt |
complete | ||
enables |
GO:0000978 |
RNA polymerase II proximal promoter sequence-specific DNA binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0000978 |
RNA polymerase II proximal promoter sequence-specific DNA binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2808 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0008134 |
transcription factor binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0019904 |
protein domain specific binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0043565 |
sequence-specific DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0070741 |
response to interleukin-6 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006325 |
chromatin organization |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007275 |
multicellular organism development |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Iwafuchi-Doi, M et al. (2016) The Pioneer Transcription Factor FoxA Maintains an Accessible Nucleosome Configuration at Enhancers for Tissue-Specific Gene Activation. Mol. Cell 62 79-91 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 2.4 Wang, H et al. (2002) Foxa2 (HNF3beta ) controls multiple genes implicated in metabolism-secretion coupling of glucose-induced insulin release. J. Biol. Chem. 277 17564-70 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 3.3 3.4 3.5 Kinder, SJ et al. (2001) Defects of the body plan of mutant embryos lacking Lim1, Otx2 or Hnf3beta activity. Int. J. Dev. Biol. 45 347-55 PubMed GONUTS page
- ↑ 4.0 4.1 Verschuur, M et al. (2005) A hepatocyte nuclear factor-3 site in the fibrinogen beta promoter is important for interleukin 6-induced expression, and its activity is influenced by the adjacent -148C/T polymorphism. J. Biol. Chem. 280 16763-71 PubMed GONUTS page
- ↑ 5.0 5.1 5.2 5.3 5.4 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ 6.0 6.1 6.2 Kittappa, R et al. (2007) The foxa2 gene controls the birth and spontaneous degeneration of dopamine neurons in old age. PLoS Biol. 5 e325 PubMed GONUTS page
- ↑ 7.0 7.1 7.2 7.3 7.4 Maier, JA et al. (2013) Foxa1 and Foxa2 are required for formation of the intervertebral discs. PLoS ONE 8 e55528 PubMed GONUTS page
- ↑ 8.0 8.1 8.2 Wan, H et al. (2005) Compensatory roles of Foxa1 and Foxa2 during lung morphogenesis. J. Biol. Chem. 280 13809-16 PubMed GONUTS page
- ↑ 9.0 9.1 9.2 9.3 Ferri, AL et al. (2007) Foxa1 and Foxa2 regulate multiple phases of midbrain dopaminergic neuron development in a dosage-dependent manner. Development 134 2761-9 PubMed GONUTS page
- ↑ 10.0 10.1 10.2 10.3 10.4 Jacob, J et al. (2007) Transcriptional repression coordinates the temporal switch from motor to serotonergic neurogenesis. Nat. Neurosci. 10 1433-9 PubMed GONUTS page
- ↑ 11.0 11.1 11.2 11.3 11.4 Perea-Gómez, A et al. (1999) HNF3beta and Lim1 interact in the visceral endoderm to regulate primitive streak formation and anterior-posterior polarity in the mouse embryo. Development 126 4499-511 PubMed GONUTS page
- ↑ 12.0 12.1 Lee, CS et al. (2005) Foxa2 is required for the differentiation of pancreatic alpha-cells. Dev. Biol. 278 484-95 PubMed GONUTS page
- ↑ Ritz-Laser, B et al. (2005) The zinc finger-containing transcription factor Gata-4 is expressed in the developing endocrine pancreas and activates glucagon gene expression. Mol. Endocrinol. 19 759-70 PubMed GONUTS page
- ↑ 14.0 14.1 Farrington, SM et al. (1997) Winged-helix, Hedgehog and Bmp genes are differentially expressed in distinct cell layers of the murine yolk sac. Mech. Dev. 62 197-211 PubMed GONUTS page
- ↑ 15.0 15.1 Metzakopian, E et al. (2012) Genome-wide characterization of Foxa2 targets reveals upregulation of floor plate genes and repression of ventrolateral genes in midbrain dopaminergic progenitors. Development 139 2625-34 PubMed GONUTS page
- ↑ 16.0 16.1 16.2 Weidenfeld, J et al. (2002) The WNT7b promoter is regulated by TTF-1, GATA6, and Foxa2 in lung epithelium. J. Biol. Chem. 277 21061-70 PubMed GONUTS page
- ↑ 17.0 17.1 Antes, TJ et al. (2000) Identification and characterization of a 315-base pair enhancer, located more than 55 kilobases 5' of the apolipoprotein B gene, that confers expression in the intestine. J. Biol. Chem. 275 26637-48 PubMed GONUTS page
- ↑ 18.0 18.1 18.2 18.3 18.4 Bochkis, IM et al. (2012) Genome-wide location analysis reveals distinct transcriptional circuitry by paralogous regulators Foxa1 and Foxa2. PLoS Genet. 8 e1002770 PubMed GONUTS page
- ↑ 19.0 19.1 Gerrish, K et al. (2004) Conserved transcriptional regulatory domains of the pdx-1 gene. Mol. Endocrinol. 18 533-48 PubMed GONUTS page
- ↑ Lee, D et al. (2008) ER71 acts downstream of BMP, Notch, and Wnt signaling in blood and vessel progenitor specification. Cell Stem Cell 2 497-507 PubMed GONUTS page
- ↑ 21.0 21.1 Filosa, S et al. (1997) Goosecoid and HNF-3beta genetically interact to regulate neural tube patterning during mouse embryogenesis. Development 124 2843-54 PubMed GONUTS page
- ↑ Cho, A et al. (2008) FKBP8 cell-autonomously controls neural tube patterning through a Gli2- and Kif3a-dependent mechanism. Dev. Biol. 321 27-39 PubMed GONUTS page
- ↑ Falix, FA et al. (2014) Hepatic Notch2 deficiency leads to bile duct agenesis perinatally and secondary bile duct formation after weaning. Dev. Biol. 396 201-13 PubMed GONUTS page
- ↑ 24.0 24.1 24.2 24.3 Kitamura, T et al. (2002) The forkhead transcription factor Foxo1 links insulin signaling to Pdx1 regulation of pancreatic beta cell growth. J. Clin. Invest. 110 1839-47 PubMed GONUTS page
- ↑ Zhou, L et al. (1996) Thyroid transcription factor-1, hepatocyte nuclear factor-3beta, surfactant protein B, C, and Clara cell secretory protein in developing mouse lung. J. Histochem. Cytochem. 44 1183-93 PubMed GONUTS page
- ↑ Bort, R et al. (2006) Hex homeobox gene controls the transition of the endoderm to a pseudostratified, cell emergent epithelium for liver bud development. Dev. Biol. 290 44-56 PubMed GONUTS page
- ↑ Besnard, V et al. (2004) Immunohistochemical localization of Foxa1 and Foxa2 in mouse embryos and adult tissues. Gene Expr. Patterns 5 193-208 PubMed GONUTS page
- ↑ Voss, AK et al. (2012) MOZ regulates the Tbx1 locus, and Moz mutation partially phenocopies DiGeorge syndrome. Dev. Cell 23 652-63 PubMed GONUTS page
- ↑ Fouillade, C et al. (2013) Transcriptome analysis for Notch3 target genes identifies Grip2 as a novel regulator of myogenic response in the cerebrovasculature. Arterioscler. Thromb. Vasc. Biol. 33 76-86 PubMed GONUTS page
- ↑ Kyrmizi, I et al. (2006) Plasticity and expanding complexity of the hepatic transcription factor network during liver development. Genes Dev. 20 2293-305 PubMed GONUTS page
- ↑ Rojas, A et al. (2005) Gata4 expression in lateral mesoderm is downstream of BMP4 and is activated directly by Forkhead and GATA transcription factors through a distal enhancer element. Development 132 3405-17 PubMed GONUTS page
- ↑ Long, L & Spear, BT (2004) FoxA proteins regulate H19 endoderm enhancer E1 and exhibit developmental changes in enhancer binding in vivo. Mol. Cell. Biol. 24 9601-9 PubMed GONUTS page
- ↑ Faure, AJ et al. (2012) Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules. Genome Res. 22 2163-75 PubMed GONUTS page
a
c
d
- GO:0001228 ! DNA-binding transcription activator activity, RNA polymerase II-specific
- GO:0003700 ! DNA-binding transcription factor activity
- GO:0000981 ! DNA-binding transcription factor activity, RNA polymerase II-specific
- GO:0003677 ! DNA binding
- GO:0071542 ! dopaminergic neuron differentiation
- GO:0021904 ! dorsal/ventral neural tube patterning
- GO:0009953 ! dorsal/ventral pattern formation
- GO:0003690 ! double-stranded DNA binding
e
g
m
n
- GO:0043433 ! negative regulation of DNA-binding transcription factor activity
- GO:0045665 ! negative regulation of neuron differentiation
- GO:2000971 ! negative regulation of detection of glucose
- GO:0010719 ! negative regulation of epithelial to mesenchymal transition
- GO:0061987 ! negative regulation of transcription from RNA polymerase II promoter by glucose
- GO:0033132 ! negative regulation of glucokinase activity
- GO:0048665 ! neuron fate specification
- GO:0007219 ! Notch signaling pathway
- GO:0005654 ! nucleoplasm
- GO:0005634 ! nucleus
p
- GO:0007389 ! pattern specification process
- GO:0045880 ! positive regulation of smoothened signaling pathway
- GO:0045666 ! positive regulation of neuron differentiation
- GO:0000432 ! positive regulation of transcription from RNA polymerase II promoter by glucose
- GO:2000543 ! positive regulation of gastrulation
- GO:0045945 ! positive regulation of transcription by RNA polymerase III
- GO:0045893 ! positive regulation of DNA-templated transcription
- GO:0040019 ! positive regulation of embryonic development
- GO:0045944 ! positive regulation of transcription by RNA polymerase II
- GO:0090009 ! primitive streak formation
- GO:0019904 ! protein domain specific binding
r
- GO:0061178 ! regulation of insulin secretion involved in cellular response to glucose stimulus
- GO:0006357 ! regulation of transcription by RNA polymerase II
- GO:0006355 ! regulation of DNA-templated transcription
- GO:0019218 ! regulation of steroid metabolic process
- GO:0030193 ! regulation of blood coagulation
- GO:0010468 ! regulation of gene expression
- GO:0019216 ! regulation of lipid metabolic process
- GO:0070741 ! response to interleukin-6
- GO:0000978 ! RNA polymerase II cis-regulatory region sequence-specific DNA binding
- Rodentia
s
t