GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

MOUSE:FOXA2

From GONUTS
Jump to: navigation, search
Species (Taxon ID) Mus musculus (Mouse). (10090)
Gene Name(s) Foxa2 (synonyms: Hnf3b, Tcf-3b, Tcf3b)
Protein Name(s) Hepatocyte nuclear factor 3-beta

HNF-3-beta HNF-3B Forkhead box protein A2

External Links
UniProt P35583
EMBL X74937
L10409
AL845297
U04197
CCDS CCDS16836.1
PIR B54258
RefSeq NP_001277994.1
NP_034576.2
UniGene Mm.938
ProteinModelPortal P35583
SMR P35583
IntAct P35583
PhosphoSite P35583
MaxQB P35583
PRIDE P35583
DNASU 15376
Ensembl ENSMUST00000047315
GeneID 15376
KEGG mmu:15376
UCSC uc008mta.1
CTD 3170
MGI MGI:1347476
eggNOG COG5025
GeneTree ENSGT00760000118904
HOGENOM HOG000231817
HOVERGEN HBG006621
InParanoid P35583
KO K08035
TreeFam TF316127
Reactome REACT_214529
NextBio 288030
PRO PR:P35583
Proteomes UP000000589
Bgee P35583
CleanEx MM_FOXA2
ExpressionAtlas P35583
Genevestigator P35583
GO GO:0005737
GO:0005634
GO:0003677
GO:0000978
GO:0003705
GO:0001205
GO:0001228
GO:0043565
GO:0003700
GO:0008344
GO:0048646
GO:0009653
GO:0009952
GO:0048468
GO:0021533
GO:0001708
GO:0016568
GO:0061448
GO:0071542
GO:0021904
GO:0009953
GO:0001705
GO:0031018
GO:0060441
GO:0001701
GO:0030324
GO:0060487
GO:2000971
GO:0010719
GO:0033132
GO:0045665
GO:0043433
GO:0000433
GO:0048665
GO:0007389
GO:0040019
GO:2000543
GO:0045666
GO:0045880
GO:0045944
GO:0000432
GO:0045945
GO:0045893
GO:0090009
GO:0030193
GO:0010468
GO:0061178
GO:0019216
GO:0019218
GO:2000976
GO:0006355
GO:0070741
GO:0023019
GO:0032525
GO:0006366
Gene3D 1.10.10.10
InterPro IPR013638
IPR018533
IPR001766
IPR018122
IPR011991
Pfam PF00250
PF08430
PF09354
PRINTS PR00053
SMART SM00339
PROSITE PS00657
PS00658
PS50039

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0060303

regulation of nucleosome density

PMID:27058788[1]

ECO:0000315

P

In figure 5 b, there is decreased low Mnase-seq signal when FoxA2 is deleted. This effect is significant for the FoxA2 strong promoters only whereas it is marginal for the FoxA2 weak promoters.

complete
CACAO 11603

involved_in

GO:2000971

negative regulation of detection of glucose

PMID:11875061[2]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0061178

regulation of insulin secretion involved in cellular response to glucose stimulus

PMID:11875061[2]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0033132

negative regulation of glucokinase activity

PMID:11875061[2]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0061987

negative regulation of transcription from RNA polymerase II promoter by glucose

PMID:11875061[2]

ECO:0000314

direct assay evidence used in manual assertion

P

has_regulation_target:(UniProtKB:P14246)|has_regulation_target:(UniProtKB:P52792)

Seeded From UniProt

complete

involved_in

GO:0000432

positive regulation of transcription from RNA polymerase II promoter by glucose

PMID:11875061[2]

ECO:0000314

direct assay evidence used in manual assertion

P

has_regulation_target:(UniProtKB:B2RUS7)|has_regulation_target:(UniProtKB:Q61743)

Seeded From UniProt

complete

involved_in

GO:2000543

positive regulation of gastrulation

PMID:11291865[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0090009

primitive streak formation

PMID:11291865[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045945

positive regulation of transcription by RNA polymerase III

PMID:15737987[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045893

positive regulation of transcription, DNA-templated

PMID:11291865[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0040019

positive regulation of embryonic development

PMID:11291865[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0030154

cell differentiation

PMID:21873635[5]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000930906
WB:WBGene00004013

P

Seeded From UniProt

complete

involved_in

GO:0009653

anatomical structure morphogenesis

PMID:21873635[5]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:1347476
PANTHER:PTN000930906

P

Seeded From UniProt

complete

involved_in

GO:0006357

regulation of transcription by RNA polymerase II

PMID:21873635[5]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0000659
MGI:MGI:1347472
MGI:MGI:1347477
PANTHER:PTN000930906
UniProtKB:O00358
UniProtKB:Q9Y261
ZFIN:ZDB-GENE-000616-15

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:21873635[5]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0000659
FB:FBgn0003430
FB:FBgn0004895
FB:FBgn0014143
MGI:MGI:1347466
MGI:MGI:1347472
MGI:MGI:1347476
MGI:MGI:1347477
MGI:MGI:1349428
MGI:MGI:1353569
MGI:MGI:1927549
MGI:MGI:95546
PANTHER:PTN000930906
PomBase:SPBC32H8.11
PomBase:SPBC4C3.12
RGD:2807
RGD:2808
RGD:2809
SGD:S000000661
SGD:S000001393
UniProtKB:O00358
UniProtKB:P55317
UniProtKB:P58012
UniProtKB:Q12948
UniProtKB:Q13461
UniProtKB:Q5AS72
UniProtKB:Q99958
UniProtKB:Q9Y261
WB:WBGene00001434
WB:WBGene00001441
WB:WBGene00002601
WB:WBGene00003017
WB:WBGene00004013
WB:WBGene00006853

C

Seeded From UniProt

complete

enables

GO:0000981

DNA-binding transcription factor activity, RNA polymerase II-specific

PMID:21873635[5]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0000659
PANTHER:PTN000930906
RGD:621723
UniProtKB:O00358
WB:WBGene00004013
ZFIN:ZDB-GENE-000616-15

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0090009

primitive streak formation

PMID:11291865[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:1857725

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0071542

dopaminergic neuron differentiation

PMID:18076286[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:1857725

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0071542

dopaminergic neuron differentiation

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9Y261

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0061448

connective tissue development

PMID:23383217[7]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:1347472

P

results_in_development_of:(EMAPA:18008)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0060487

lung epithelial cell differentiation

PMID:15668254[8]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:1347472

P

  • occurs_in:(EMAPA:16728)
  • results_in_acquisition_of_features_of:(CL:0000082)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0060441

epithelial tube branching involved in lung morphogenesis

PMID:15668254[8]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:1347472

P

occurs_in:(EMAPA:16728)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0048665

neuron fate specification

PMID:17596284[9]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:1347472

P

  • occurs_in:(EMAPA:16974)
  • results_in_specification_of:(CL:0000700)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0048665

neuron fate specification

PMID:17922007[10]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2176222,MGI:MGI:2177337

P

  • occurs_in:(EMAPA:16478)
  • results_in_specification_of:(CL:0000850)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0048646

anatomical structure formation involved in morphogenesis

PMID:23383217[7]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:1347472

P

results_in_formation_of:(EMAPA:18008)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0048646

anatomical structure formation involved in morphogenesis

PMID:10498685[11]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:99783

P

results_in_formation_of:(EMAPA:16072)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0048468

cell development

PMID:15680365[12]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2177337,MGI:MGI:2664968

P

  • occurs_in:(EMAPA:32927)
  • occurs_in:(CL:0000171)

Seeded From UniProt

complete

enables

GO:0046332

SMAD binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2808

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045944

positive regulation of transcription by RNA polymerase II

PMID:15539431[13]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:95664

P

has_regulation_target:(MGI:MGI:95674)|has_regulation_target:(MGI:MGI:95674)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045944

positive regulation of transcription by RNA polymerase II

PMID:9152011[14]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

has_regulation_target:(MGI:MGI:87951)|has_regulation_target:(MGI:MGI:98865)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045944

positive regulation of transcription by RNA polymerase II

PMID:22696295[15]

ECO:0000314

direct assay evidence used in manual assertion

P

has_regulation_target:(MGI:MGI:1888519)|has_regulation_target:(MGI:MGI:1100513)|has_regulation_target:(MGI:MGI:1349451)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045944

positive regulation of transcription by RNA polymerase II

PMID:11914369[16]

ECO:0000314

direct assay evidence used in manual assertion

P

has_regulation_target:(MGI:MGI:98962)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045944

positive regulation of transcription by RNA polymerase II

PMID:10859308[17]

ECO:0000314

direct assay evidence used in manual assertion

P

  • regulates_o_occurs_in:(EMAPA:32874)
  • has_regulation_target:(MGI:MGI:88052)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045944

positive regulation of transcription by RNA polymerase II

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9Y261

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045944

positive regulation of transcription by RNA polymerase II

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2808

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045893

positive regulation of transcription, DNA-templated

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9Y261

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045880

positive regulation of smoothened signaling pathway

PMID:23383217[7]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:1347472

P

regulates_o_occurs_in:(EMAPA:16191)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045666

positive regulation of neuron differentiation

PMID:17922007[10]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:1347476

P

  • regulates_o_occurs_in:(EMAPA:16478)
  • regulates_o_results_in_acquisition_of_features_of:(CL:0000850)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045666

positive regulation of neuron differentiation

PMID:17596284[9]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:1347472

P

  • regulates_o_occurs_in:(EMAPA:16974)
  • regulates_o_results_in_acquisition_of_features_of:(CL:0000700)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045666

positive regulation of neuron differentiation

PMID:17596284[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2177337

P

  • regulates_o_occurs_in:(EMAPA:16974)
  • regulates_o_results_in_acquisition_of_features_of:(CL:0000700)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045665

negative regulation of neuron differentiation

PMID:17922007[10]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:1347476

P

  • occurs_in:(EMAPA:16478)
  • regulates_o_results_in_acquisition_of_features_of:(CL:0000100)

Seeded From UniProt

complete

enables

GO:0044212

transcription regulatory region DNA binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9Y261

F

Seeded From UniProt

complete

enables

GO:0043565

sequence-specific DNA binding

PMID:22737085[18]

ECO:0000314

direct assay evidence used in manual assertion

F

occurs_in:(EMAPA:16846)

Seeded From UniProt

complete

enables

GO:0043565

sequence-specific DNA binding

PMID:14701942[19]

ECO:0000314

direct assay evidence used in manual assertion

F

has_input:(MGI:MGI:102851)

Seeded From UniProt

complete

enables

GO:0043565

sequence-specific DNA binding

PMID:11914369[16]

ECO:0000314

direct assay evidence used in manual assertion

F

has_input:(MGI:MGI:98962)

Seeded From UniProt

complete

enables

GO:0043565

sequence-specific DNA binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2808

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0043433

negative regulation of DNA-binding transcription factor activity

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9Y261

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0032525

somite rostral/caudal axis specification

PMID:11291865[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:1857725

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0031018

endocrine pancreas development

PMID:15680365[12]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2177337,MGI:MGI:2664968

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0031018

endocrine pancreas development

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9Y261

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0030324

lung development

PMID:15668254[8]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:1347472

P

results_in_development_of:(EMAPA:16728)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0030193

regulation of blood coagulation

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9Y261

P

Seeded From UniProt

complete

part_of

GO:0030054

cell junction

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9Y261

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0023019

signal transduction involved in regulation of gene expression

PMID:18462699[20]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0021904

dorsal/ventral neural tube patterning

PMID:9226455[21]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:95841

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0021904

dorsal/ventral neural tube patterning

PMID:23383217[7]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:1347472

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0021904

dorsal/ventral neural tube patterning

PMID:18590716[22]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0021533

cell differentiation in hindbrain

PMID:17922007[10]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:1347476

P

  • occurs_in:(EMAPA:16478)
  • results_in_acquisition_of_features_of:(CL:0000850)|occurs_in(EMAPA:16478)
  • results_in_acquisition_of_features_of:(CL:0000100)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0021533

cell differentiation in hindbrain

PMID:17922007[10]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2176222,MGI:MGI:2177337

P

  • occurs_in:(EMAPA:16478)
  • results_in_acquisition_of_features_of:(CL:0000850)|occurs_in(EMAPA:16478)
  • results_in_acquisition_of_features_of:(CL:0000100)

Seeded From UniProt

complete

enables

GO:0019900

kinase binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2808

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0019218

regulation of steroid metabolic process

PMID:22737085[18]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

regulates_o_occurs_in:(EMAPA:16846)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0019218

regulation of steroid metabolic process

PMID:22737085[18]

ECO:0000314

direct assay evidence used in manual assertion

P

regulates_o_occurs_in:(EMAPA:16846)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0019216

regulation of lipid metabolic process

PMID:22737085[18]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

regulates_o_occurs_in:(EMAPA:16846)|regulates_o_occurs_in:(EMAPA:16846)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0019216

regulation of lipid metabolic process

PMID:22737085[18]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0010719

negative regulation of epithelial to mesenchymal transition

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9Y261

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0010468

regulation of gene expression

PMID:17596284[9]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:1347472

P

  • occurs_in:(EMAPA:16974)
  • occurs_in:(CL:0000700)
  • has_regulation_target:(MGI:MGI:109619)|occurs_in(EMAPA:16974)
  • occurs_in:(CL:0000700)
  • has_regulation_target:(MGI:MGI:97347)|occurs_in(EMAPA:16974)
  • occurs_in:(CL:0000700)
  • has_regulation_target:(MGI:MGI:1352456)|occurs_in(EMAPA:16974)
  • occurs_in:(CL:0000700)
  • has_regulation_target:(MGI:MGI:95389)|occurs_in(EMAPA:16974)
  • occurs_in:(CL:0000700)
  • has_regulation_target:(MGI:MGI:94876)|occurs_in(EMAPA:16974)
  • occurs_in:(CL:0000700)
  • has_regulation_target:(MGI:MGI:98735)|occurs_in(EMAPA:16974)
  • occurs_in:(CL:0000700)
  • has_regulation_target:(MGI:MGI:109619)|occurs_in(EMAPA:16974)
  • occurs_in:(CL:0000700)
  • has_regulation_target:(MGI:MGI:97347)|occurs_in(EMAPA:16974)
  • occurs_in:(CL:0000700)
  • has_regulation_target:(MGI:MGI:1352456)|occurs_in(EMAPA:16974)
  • occurs_in:(CL:0000700)
  • has_regulation_target:(MGI:MGI:95389)|occurs_in(EMAPA:16974)
  • occurs_in:(CL:0000700)
  • has_regulation_target:(MGI:MGI:94876)|occurs_in(EMAPA:16974)
  • occurs_in:(CL:0000700)
  • has_regulation_target:(MGI:MGI:98735)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0009953

dorsal/ventral pattern formation

PMID:10498685[11]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:99783

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0009952

anterior/posterior pattern specification

PMID:10498685[11]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:99783

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0009653

anatomical structure morphogenesis

PMID:9226455[21]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:95841

P

has_participant:(EMAPA:16118)|has_participant:(EMAPA:16272)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0008344

adult locomotory behavior

PMID:18076286[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:1857725

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0007389

pattern specification process

PMID:10498685[11]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:95664

P

occurs_in:(EMAPA:16058)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0007219

Notch signaling pathway

PMID:25446530[23]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0006357

regulation of transcription by RNA polymerase II

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9Y261

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0006355

regulation of transcription, DNA-templated

PMID:12488434[24]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0006355

regulation of transcription, DNA-templated

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2808

P

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9Y261

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:8813084[25]

ECO:0000314

direct assay evidence used in manual assertion

C

  • part_of:(EMAPA:16846)|part_of:(EMAPA:16247)|part_of:(EMAPA:16976)|part_of:(EMAPA:16903)|part_of:(EMAPA:16731)
  • part_of:(CL:0000066)|part_of:(EMAPA:16735)
  • part_of:(CL:0000066)|part_of:(EMAPA:16851)
  • part_of:(CL:0000066)|part_of:(EMAPA:16855)
  • part_of:(CL:0000066)|part_of:(EMAPA:16855)
  • part_of:(CL:0000066)|part_of:(EMAPA:17655)
  • part_of:(CL:0000066)|part_of:(EMAPA:17663)
  • part_of:(CL:0000066)|part_of:(EMAPA:17655)
  • part_of:(CL:0000066)|part_of:(EMAPA:17663)
  • part_of:(CL:0000066)|part_of:(EMAPA:17655)
  • part_of:(CL:0000066)|part_of:(EMAPA:17663)
  • part_of:(CL:0000066)|part_of:(EMAPA:17655)
  • part_of:(CL:0000066)|part_of:(EMAPA:17663)
  • part_of:(CL:0000066)|part_of:(EMAPA:17655)
  • part_of:(CL:0000066)|part_of:(EMAPA:17663)
  • part_of:(CL:0000066)|part_of:(EMAPA:17655)
  • part_of:(CL:0000066)|part_of:(EMAPA:17663)
  • part_of:(CL:0000066)|part_of:(EMAPA:17655)
  • part_of:(CL:0000066)|part_of:(EMAPA:17663)
  • part_of:(CL:0000066)|part_of:(EMAPA:35121)
  • part_of:(CL:0000066)|part_of:(EMAPA:32693)
  • part_of:(CL:0000066)|part_of:(EMAPA:16855)
  • part_of:(CL:0000066)|part_of:(EMAPA:16855)
  • part_of:(CL:0000066)|part_of:(EMAPA:16855)
  • part_of:(CL:0000066)|part_of:(EMAPA:16855)
  • part_of:(CL:0000066)|part_of:(EMAPA:16855)
  • part_of:(CL:0000066)|part_of:(EMAPA:16855)
  • part_of:(CL:0000066)|part_of:(EMAPA:16855)
  • part_of:(CL:0000066)

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:23383217[7]

ECO:0000314

direct assay evidence used in manual assertion

C

part_of:(EMAPA:16531)|part_of:(EMAPA:16191)

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:16364283[26]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:15567715[27]

ECO:0000314

direct assay evidence used in manual assertion

C

part_of:(EMAPA:16706)|part_of:(EMAPA:16728)|part_of:(EMAPA:16715)|part_of:(EMAPA:16846)

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:12488434[24]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9Y261

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2808

C

Seeded From UniProt

complete

enables

GO:0003700

DNA-binding transcription factor activity

PMID:22921202[28]

ECO:0000314

direct assay evidence used in manual assertion

F

has_regulation_target:(MGI:MGI:98493)

Seeded From UniProt

complete

enables

GO:0003700

DNA-binding transcription factor activity

PMID:12488434[24]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003700

DNA-binding transcription factor activity

PMID:11914369[16]

ECO:0000314

direct assay evidence used in manual assertion

F

has_regulation_target:(MGI:MGI:98962)

Seeded From UniProt

complete

enables

GO:0003700

DNA-binding transcription factor activity

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9Y261

F

Seeded From UniProt

complete

enables

GO:0003700

DNA-binding transcription factor activity

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2808

F

Seeded From UniProt

complete

enables

GO:0003690

double-stranded DNA binding

PMID:23117660[29]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:1890508

F

Seeded From UniProt

complete

enables

GO:0003690

double-stranded DNA binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2808

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

PMID:16912278[30]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

PMID:15987774[31]

ECO:0000314

direct assay evidence used in manual assertion

F

has_participant:(MGI:MGI:95664)

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

PMID:15485926[32]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

PMID:12488434[24]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9Y261

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0001708

cell fate specification

PMID:18076286[6]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0001705

ectoderm formation

PMID:10498685[11]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:99783

P

results_in_formation_of:(EMAPA:16069)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0001701

in utero embryonic development

PMID:9152011[14]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0001228

DNA-binding transcription activator activity, RNA polymerase II-specific

PMID:22780989[33]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0001228

DNA-binding transcription activator activity, RNA polymerase II-specific

PMID:22696295[15]

ECO:0000314

direct assay evidence used in manual assertion

F

has_regulation_target:(MGI:MGI:1888519)

Seeded From UniProt

complete

enables

GO:0001228

DNA-binding transcription activator activity, RNA polymerase II-specific

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2808

F

Seeded From UniProt

complete

enables

GO:0000981

DNA-binding transcription factor activity, RNA polymerase II-specific

PMID:14701942[19]

ECO:0000314

direct assay evidence used in manual assertion

F

has_regulation_target:(MGI:MGI:102851)

Seeded From UniProt

complete

enables

GO:0000981

DNA-binding transcription factor activity, RNA polymerase II-specific

PMID:10859308[17]

ECO:0000314

direct assay evidence used in manual assertion

F

  • occurs_in:(EMAPA:32874)
  • has_regulation_target:(MGI:MGI:88052)

Seeded From UniProt

complete

enables

GO:0000978

RNA polymerase II proximal promoter sequence-specific DNA binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9Y261

F

Seeded From UniProt

complete

enables

GO:0000978

RNA polymerase II proximal promoter sequence-specific DNA binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2808

F

Seeded From UniProt

complete

enables

GO:0003700

DNA-binding transcription factor activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001766
InterPro:IPR018122
InterPro:IPR030456

F

Seeded From UniProt

complete

involved_in

GO:0006355

regulation of transcription, DNA-templated

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001766
InterPro:IPR018122
InterPro:IPR030456

P

Seeded From UniProt

complete

enables

GO:0008134

transcription factor binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR013638

F

Seeded From UniProt

complete

enables

GO:0019904

protein domain specific binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR013638

F

Seeded From UniProt

complete

enables

GO:0043565

sequence-specific DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001766
InterPro:IPR018122
InterPro:IPR030456

F

Seeded From UniProt

complete

involved_in

GO:0070741

response to interleukin-6

PMID:15737987[4]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

involved_in

GO:0006325

chromatin organization

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0156

P

Seeded From UniProt

complete

involved_in

GO:0007275

multicellular organism development

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0217

P

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0238

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. Iwafuchi-Doi, M et al. (2016) The Pioneer Transcription Factor FoxA Maintains an Accessible Nucleosome Configuration at Enhancers for Tissue-Specific Gene Activation. Mol. Cell 62 79-91 PubMed GONUTS page
  2. 2.0 2.1 2.2 2.3 2.4 Wang, H et al. (2002) Foxa2 (HNF3beta ) controls multiple genes implicated in metabolism-secretion coupling of glucose-induced insulin release. J. Biol. Chem. 277 17564-70 PubMed GONUTS page
  3. 3.0 3.1 3.2 3.3 3.4 3.5 Kinder, SJ et al. (2001) Defects of the body plan of mutant embryos lacking Lim1, Otx2 or Hnf3beta activity. Int. J. Dev. Biol. 45 347-55 PubMed GONUTS page
  4. 4.0 4.1 Verschuur, M et al. (2005) A hepatocyte nuclear factor-3 site in the fibrinogen beta promoter is important for interleukin 6-induced expression, and its activity is influenced by the adjacent -148C/T polymorphism. J. Biol. Chem. 280 16763-71 PubMed GONUTS page
  5. 5.0 5.1 5.2 5.3 5.4 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
  6. 6.0 6.1 6.2 Kittappa, R et al. (2007) The foxa2 gene controls the birth and spontaneous degeneration of dopamine neurons in old age. PLoS Biol. 5 e325 PubMed GONUTS page
  7. 7.0 7.1 7.2 7.3 7.4 Maier, JA et al. (2013) Foxa1 and Foxa2 are required for formation of the intervertebral discs. PLoS ONE 8 e55528 PubMed GONUTS page
  8. 8.0 8.1 8.2 Wan, H et al. (2005) Compensatory roles of Foxa1 and Foxa2 during lung morphogenesis. J. Biol. Chem. 280 13809-16 PubMed GONUTS page
  9. 9.0 9.1 9.2 9.3 Ferri, AL et al. (2007) Foxa1 and Foxa2 regulate multiple phases of midbrain dopaminergic neuron development in a dosage-dependent manner. Development 134 2761-9 PubMed GONUTS page
  10. 10.0 10.1 10.2 10.3 10.4 Jacob, J et al. (2007) Transcriptional repression coordinates the temporal switch from motor to serotonergic neurogenesis. Nat. Neurosci. 10 1433-9 PubMed GONUTS page
  11. 11.0 11.1 11.2 11.3 11.4 Perea-Gómez, A et al. (1999) HNF3beta and Lim1 interact in the visceral endoderm to regulate primitive streak formation and anterior-posterior polarity in the mouse embryo. Development 126 4499-511 PubMed GONUTS page
  12. 12.0 12.1 Lee, CS et al. (2005) Foxa2 is required for the differentiation of pancreatic alpha-cells. Dev. Biol. 278 484-95 PubMed GONUTS page
  13. Ritz-Laser, B et al. (2005) The zinc finger-containing transcription factor Gata-4 is expressed in the developing endocrine pancreas and activates glucagon gene expression. Mol. Endocrinol. 19 759-70 PubMed GONUTS page
  14. 14.0 14.1 Farrington, SM et al. (1997) Winged-helix, Hedgehog and Bmp genes are differentially expressed in distinct cell layers of the murine yolk sac. Mech. Dev. 62 197-211 PubMed GONUTS page
  15. 15.0 15.1 Metzakopian, E et al. (2012) Genome-wide characterization of Foxa2 targets reveals upregulation of floor plate genes and repression of ventrolateral genes in midbrain dopaminergic progenitors. Development 139 2625-34 PubMed GONUTS page
  16. 16.0 16.1 16.2 Weidenfeld, J et al. (2002) The WNT7b promoter is regulated by TTF-1, GATA6, and Foxa2 in lung epithelium. J. Biol. Chem. 277 21061-70 PubMed GONUTS page
  17. 17.0 17.1 Antes, TJ et al. (2000) Identification and characterization of a 315-base pair enhancer, located more than 55 kilobases 5' of the apolipoprotein B gene, that confers expression in the intestine. J. Biol. Chem. 275 26637-48 PubMed GONUTS page
  18. 18.0 18.1 18.2 18.3 18.4 Bochkis, IM et al. (2012) Genome-wide location analysis reveals distinct transcriptional circuitry by paralogous regulators Foxa1 and Foxa2. PLoS Genet. 8 e1002770 PubMed GONUTS page
  19. 19.0 19.1 Gerrish, K et al. (2004) Conserved transcriptional regulatory domains of the pdx-1 gene. Mol. Endocrinol. 18 533-48 PubMed GONUTS page
  20. Lee, D et al. (2008) ER71 acts downstream of BMP, Notch, and Wnt signaling in blood and vessel progenitor specification. Cell Stem Cell 2 497-507 PubMed GONUTS page
  21. 21.0 21.1 Filosa, S et al. (1997) Goosecoid and HNF-3beta genetically interact to regulate neural tube patterning during mouse embryogenesis. Development 124 2843-54 PubMed GONUTS page
  22. Cho, A et al. (2008) FKBP8 cell-autonomously controls neural tube patterning through a Gli2- and Kif3a-dependent mechanism. Dev. Biol. 321 27-39 PubMed GONUTS page
  23. Falix, FA et al. (2014) Hepatic Notch2 deficiency leads to bile duct agenesis perinatally and secondary bile duct formation after weaning. Dev. Biol. 396 201-13 PubMed GONUTS page
  24. 24.0 24.1 24.2 24.3 Kitamura, T et al. (2002) The forkhead transcription factor Foxo1 links insulin signaling to Pdx1 regulation of pancreatic beta cell growth. J. Clin. Invest. 110 1839-47 PubMed GONUTS page
  25. Zhou, L et al. (1996) Thyroid transcription factor-1, hepatocyte nuclear factor-3beta, surfactant protein B, C, and Clara cell secretory protein in developing mouse lung. J. Histochem. Cytochem. 44 1183-93 PubMed GONUTS page
  26. Bort, R et al. (2006) Hex homeobox gene controls the transition of the endoderm to a pseudostratified, cell emergent epithelium for liver bud development. Dev. Biol. 290 44-56 PubMed GONUTS page
  27. Besnard, V et al. (2004) Immunohistochemical localization of Foxa1 and Foxa2 in mouse embryos and adult tissues. Gene Expr. Patterns 5 193-208 PubMed GONUTS page
  28. Voss, AK et al. (2012) MOZ regulates the Tbx1 locus, and Moz mutation partially phenocopies DiGeorge syndrome. Dev. Cell 23 652-63 PubMed GONUTS page
  29. Fouillade, C et al. (2013) Transcriptome analysis for Notch3 target genes identifies Grip2 as a novel regulator of myogenic response in the cerebrovasculature. Arterioscler. Thromb. Vasc. Biol. 33 76-86 PubMed GONUTS page
  30. Kyrmizi, I et al. (2006) Plasticity and expanding complexity of the hepatic transcription factor network during liver development. Genes Dev. 20 2293-305 PubMed GONUTS page
  31. Rojas, A et al. (2005) Gata4 expression in lateral mesoderm is downstream of BMP4 and is activated directly by Forkhead and GATA transcription factors through a distal enhancer element. Development 132 3405-17 PubMed GONUTS page
  32. Long, L & Spear, BT (2004) FoxA proteins regulate H19 endoderm enhancer E1 and exhibit developmental changes in enhancer binding in vivo. Mol. Cell. Biol. 24 9601-9 PubMed GONUTS page
  33. Faure, AJ et al. (2012) Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules. Genome Res. 22 2163-75 PubMed GONUTS page