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HUMAN:SPF30
Contents
| Species (Taxon ID) | Homo sapiens (Human). (9606) | |
| Gene Name(s) | SMNDC1 (synonyms: SMNR, SPF30) | |
| Protein Name(s) | Survival of motor neuron-related-splicing factor 30
30 kDa splicing factor SMNrp SMN-related protein Survival motor neuron domain-containing protein 1 | |
| External Links | ||
| UniProt | O75940 | |
| EMBL | AF083385 AF107463 AK314013 AL360182 CH471066 CH471066 CH471066 BC011234 | |
| CCDS | CCDS7565.1 | |
| RefSeq | NP_005862.1 | |
| UniGene | Hs.632093 | |
| PDB | 4A4F 4A4H | |
| PDBsum | 4A4F 4A4H | |
| ProteinModelPortal | O75940 | |
| SMR | O75940 | |
| BioGrid | 115574 | |
| IntAct | O75940 | |
| MINT | MINT-4527315 | |
| STRING | 9606.ENSP00000358605 | |
| PhosphoSite | O75940 | |
| MaxQB | O75940 | |
| PaxDb | O75940 | |
| PeptideAtlas | O75940 | |
| PRIDE | O75940 | |
| DNASU | 10285 | |
| Ensembl | ENST00000369592 ENST00000369603 | |
| GeneID | 10285 | |
| KEGG | hsa:10285 | |
| UCSC | uc001kzc.4 | |
| CTD | 10285 | |
| GeneCards | GC10M112042 | |
| GeneReviews | SMNDC1 | |
| HGNC | HGNC:16900 | |
| HPA | HPA050508 | |
| MIM | 603519 | |
| neXtProt | NX_O75940 | |
| PharmGKB | PA134990780 | |
| eggNOG | NOG251685 | |
| GeneTree | ENSGT00730000111118 | |
| HOGENOM | HOG000007521 | |
| HOVERGEN | HBG057021 | |
| InParanoid | O75940 | |
| KO | K12839 | |
| OMA | NNKAYSK | |
| OrthoDB | EOG7K6PVX | |
| PhylomeDB | O75940 | |
| TreeFam | TF315413 | |
| ChiTaRS | SMNDC1 | |
| GeneWiki | Survival_motor_neuron_domain_containing_1 | |
| GenomeRNAi | 10285 | |
| NextBio | 38968 | |
| PRO | PR:O75940 | |
| Proteomes | UP000005640 | |
| Bgee | O75940 | |
| CleanEx | HS_SMNDC1 | |
| Genevestigator | O75940 | |
| GO | GO:0015030 GO:0005737 GO:0045111 GO:0016607 GO:0005634 GO:0005681 GO:0044822 GO:0006915 GO:0006397 GO:0008380 GO:0000375 | |
| InterPro | IPR010304 IPR002999 | |
| Pfam | PF06003 | |
| SMART | SM00333 | |
| PROSITE | PS50304 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
enables |
GO:0003723 |
RNA binding |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003723 |
RNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006397 |
mRNA processing |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006915 |
apoptotic process |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0000375 |
RNA splicing, via transesterification reactions |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005654 |
nucleoplasm |
Reactome:R-HSA-72160 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
C |
Seeded From UniProt |
complete | |
|
involved_in |
GO:0000398 |
mRNA splicing, via spliceosome |
Reactome:R-HSA-72163 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006915 |
apoptotic process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006397 |
mRNA processing |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005681 |
spliceosomal complex |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0008380 |
RNA splicing |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0015030 |
Cajal body |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016607 |
nuclear speck |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Castello, A et al. (2012) Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Cell 149 1393-406 PubMed GONUTS page
- ↑ 2.0 2.1 Talbot, K et al. (1998) Characterization of a gene encoding survival motor neuron (SMN)-related protein, a constituent of the spliceosome complex. Hum. Mol. Genet. 7 2149-56 PubMed GONUTS page
- ↑ Neubauer, G et al. (1998) Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex. Nat. Genet. 20 46-50 PubMed GONUTS page
