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HUMAN:RBM24
Contents
Species (Taxon ID) | Homo sapiens (Human). (9606) | |
Gene Name(s) | RBM24 (synonyms: RNPC6) | |
Protein Name(s) | RNA-binding protein 24
RNA-binding motif protein 24 RNA-binding region-containing protein 6 | |
External Links | ||
UniProt | Q9BX46 | |
EMBL | AK055391 AK095016 AY547318 AL136305 AL136305 BC104810 BC104808 | |
CCDS | CCDS4538.1 CCDS47378.1 CCDS47379.1 | |
RefSeq | NP_001137413.1 NP_001137414.1 NP_694565.1 | |
UniGene | Hs.519904 | |
ProteinModelPortal | Q9BX46 | |
SMR | Q9BX46 | |
BioGrid | 128744 | |
IntAct | Q9BX46 | |
MINT | MINT-2879164 | |
STRING | 9606.ENSP00000368341 | |
iPTMnet | Q9BX46 | |
PhosphoSitePlus | Q9BX46 | |
BioMuta | RBM24 | |
DMDM | 74761312 | |
EPD | Q9BX46 | |
MaxQB | Q9BX46 | |
PaxDb | Q9BX46 | |
PeptideAtlas | Q9BX46 | |
PRIDE | Q9BX46 | |
Ensembl | ENST00000318204 ENST00000379052 ENST00000425446 | |
GeneID | 221662 | |
KEGG | hsa:221662 | |
UCSC | uc003nbz.5 | |
CTD | 221662 | |
GeneCards | RBM24 | |
HGNC | HGNC:21539 | |
HPA | HPA066927 HPA067231 | |
neXtProt | NX_Q9BX46 | |
OpenTargets | ENSG00000112183 | |
PharmGKB | PA134964569 | |
eggNOG | KOG0149 ENOG4111PGT | |
GeneTree | ENSGT00390000002308 | |
HOGENOM | HOG000276232 | |
HOVERGEN | HBG108399 | |
InParanoid | Q9BX46 | |
OMA | SSPYIDY | |
OrthoDB | EOG091G13K0 | |
PhylomeDB | Q9BX46 | |
TreeFam | TF314235 | |
GenomeRNAi | 221662 | |
PRO | PR:Q9BX46 | |
Proteomes | UP000005640 | |
Bgee | ENSG00000112183 | |
CleanEx | HS_RBM24 | |
ExpressionAtlas | Q9BX46 | |
Genevisible | Q9BX46 | |
GO | GO:0005829 GO:0005654 GO:0003730 GO:0000166 GO:0030154 GO:0043488 GO:0010830 | |
Gene3D | 3.30.70.330 | |
InterPro | IPR012677 IPR000504 | |
Pfam | PF00076 | |
SMART | SM00360 | |
SUPFAM | SSF54928 | |
PROSITE | PS50102 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
GO:0061158 |
3'-UTR-mediated mRNA destabilization |
ECO:0000314 |
P |
Organism: Homo sapiens. Protein Name: RNA-Binding Protein RBM24. Notes: Figures 5G-H and 6D-E are used. First, the former two figures prove that RBM24 destabilizes the mRNA of p63. The paper states that “the half-life of ΔNp63 mRNA was deceased from 3.7 hours in the control cells to 2.7 hours in cells with RBM24 expression, and the half-life of TAp63 mRNA was deceased from 9.3 hours in the control cells to 7.2 hours in cells with RBM24 expression.” As can be seen in the line graphs, the p63 transcripts destabilize more quickly in the presence of RBM24. Thus, RBM24 is linked to mRNA destabilization. It is also linked to 3’UTR-mediated mRNA destabilization in particular, as proven by Figures 6D-E. As the paper states, “we found that RBM24 had no effect on TAp63α expression from an expression vector that only contains TAp63α coding sequence (Fig. 6D). By contrast, TAp63α expression was significantly inhibited by RBM24 when the TAp63α expression vector contains a full-length p63 3′UTR (Fig. 6E).” In Figure 6D, it can be seen that the relative level of TAp63α barely changed when RBM24 was transfected into the cells. However, in Figure 6E, the level decreased significantly, due to the presence of a 3’UTR region. Thus, the inhibition of p63 occurs by the destabilization of its transcripts, specifically the 3’UTR region of mRNA. This links RBM24 to 3’UTR-mediated mRNA destabilization. |
complete | |||||
enables |
GO:0035925 |
mRNA 3'-UTR AU-rich region binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006974 |
cellular response to DNA damage stimulus |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:1905870 |
positive regulation of 3'-UTR-mediated mRNA stabilization |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0000381 |
regulation of alternative mRNA splicing, via spliceosome |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:2000738 |
positive regulation of stem cell differentiation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0061158 |
3'-UTR-mediated mRNA destabilization |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0003730 |
mRNA 3'-UTR binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045663 |
positive regulation of myoblast differentiation |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:2000766 |
negative regulation of cytoplasmic translation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0003730 |
mRNA 3'-UTR binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:1990825 |
sequence-specific mRNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0000381 |
regulation of alternative mRNA splicing, via spliceosome |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0010831 |
positive regulation of myotube differentiation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0048255 |
mRNA stabilization |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0061157 |
mRNA destabilization |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0000381 |
regulation of alternative mRNA splicing, via spliceosome |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:1990715 |
mRNA CDS binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0097157 |
pre-mRNA intronic binding |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:1902811 |
positive regulation of skeletal muscle fiber differentiation |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0000381 |
regulation of alternative mRNA splicing, via spliceosome |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0043488 |
regulation of mRNA stability |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0010830 |
regulation of myotube differentiation |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0003730 |
mRNA 3'-UTR binding |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:1990904 |
ribonucleoprotein complex |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0001215 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006397 |
mRNA processing |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN002690849 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005829 |
cytosol |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN002544150 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0003729 |
mRNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:1889294 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0003723 |
RNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:104819 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0005829 |
cytosol |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005654 |
nucleoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:1902811 |
positive regulation of skeletal muscle fiber differentiation |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:D3Z4I3 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0097157 |
pre-mRNA intronic binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:D3Z4I3 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0043488 |
regulation of mRNA stability |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:D3Z4I3 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0010830 |
regulation of myotube differentiation |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:D3Z4I3 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:D3Z4I3 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0003730 |
mRNA 3'-UTR binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:D3Z4I3 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0003197 |
endocardial cushion development |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:D3Z4I3 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0000381 |
regulation of alternative mRNA splicing, via spliceosome |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:D3Z4I3 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0003676 |
nucleic acid binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003723 |
RNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006397 |
mRNA processing |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006417 |
regulation of translation |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0008380 |
RNA splicing |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0030154 |
cell differentiation |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 Xu, E et al. (2014) RNA-binding protein RBM24 regulates p63 expression via mRNA stability. Mol. Cancer Res. 12 359-69 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 Jiang, Y et al. (2014) Rbm24, an RNA-binding protein and a target of p53, regulates p21 expression via mRNA stability. J. Biol. Chem. 289 3164-75 PubMed GONUTS page
- ↑ 3.0 3.1 Zhang, T et al. (2016) Rbm24 Regulates Alternative Splicing Switch in Embryonic Stem Cell Cardiac Lineage Differentiation. Stem Cells 34 1776-89 PubMed GONUTS page
- ↑ 4.0 4.1 4.2 Zhang, M et al. (2018) Rbm24, a target of p53, is necessary for proper expression of p53 and heart development. Cell Death Differ. 25 1118-1130 PubMed GONUTS page
- ↑ 5.0 5.1 Cardinali, B et al. (2016) MicroRNA-222 regulates muscle alternative splicing through Rbm24 during differentiation of skeletal muscle cells. Cell Death Dis 7 e2086 PubMed GONUTS page
- ↑ 6.0 6.1 6.2 6.3 Lin, Y et al. (2018) Global profiling of Rbm24 bound RNAs uncovers a multi-tasking RNA binding protein. Int. J. Biochem. Cell Biol. 94 10-21 PubMed GONUTS page
- ↑ 7.0 7.1 7.2 7.3 7.4 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
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- GO:1902811 ! positive regulation of skeletal muscle fiber differentiation
- GO:0045663 ! positive regulation of myoblast differentiation
- GO:1905870 ! positive regulation of 3'-UTR-mediated mRNA stabilization
- GO:0010831 ! positive regulation of myotube differentiation
- GO:2000738 ! positive regulation of stem cell differentiation
- GO:0097157 ! pre-mRNA intronic binding
- Primates
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