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HUMAN:DDX58

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Species (Taxon ID) Homo sapiens (Human). (9606)
Gene Name(s) DDX58
Protein Name(s) Probable ATP-dependent RNA helicase DDX58

DEAD box protein 58 RIG-I-like receptor 1 RLR-1 Retinoic acid-inducible gene 1 protein RIG-1 Retinoic acid-inducible gene I protein RIG-I

External Links
UniProt O95786
EMBL AF038963
AL353671
AL161783
AL161783
AL353671
CH471071
BC132786
BC136610
BX647917
AL137608
CCDS CCDS6526.1
PIR T46312
RefSeq NP_055129.2
UniGene Hs.190622
PDB 2LWD
2LWE
2QFB
2QFD
2RMJ
2YKG
3LRN
3LRR
3NCU
3OG8
3TMI
3ZD6
3ZD7
4AY2
4BPB
4NQK
4ON9
4P4H
PDBsum 2LWD
2LWE
2QFB
2QFD
2RMJ
2YKG
3LRN
3LRR
3NCU
3OG8
3TMI
3ZD6
3ZD7
4AY2
4BPB
4NQK
4ON9
4P4H
ProteinModelPortal O95786
SMR O95786
BioGrid 117121
DIP DIP-35444N
IntAct O95786
MINT MINT-2799116
STRING 9606.ENSP00000369213
PhosphoSite O95786
MaxQB O95786
PaxDb O95786
PRIDE O95786
Ensembl ENST00000379883
GeneID 23586
KEGG hsa:23586
UCSC uc003zra.3
uc010mjk.1
CTD 23586
GeneCards GC09M032447
HGNC HGNC:19102
HPA CAB012643
HPA047193
MIM 609631
neXtProt NX_O95786
PharmGKB PA134994272
eggNOG COG1111
GeneTree ENSGT00510000046789
HOGENOM HOG000230911
HOVERGEN HBG052325
InParanoid O95786
KO K12646
OMA KCKAFAC
PhylomeDB O95786
TreeFam TF330258
Reactome REACT_115831
REACT_24938
REACT_24969
REACT_25026
REACT_25039
REACT_25271
REACT_25359
ChiTaRS DDX58
EvolutionaryTrace O95786
GeneWiki RIG-I
GenomeRNAi 23586
NextBio 46208
PRO PR:O95786
Proteomes UP000005640
Bgee O95786
CleanEx HS_DDX58
ExpressionAtlas O95786
Genevestigator O95786
GO GO:0015629
GO:0005737
GO:0005829
GO:0032587
GO:0005923
GO:0005524
GO:0003690
GO:0003725
GO:0004386
GO:0042802
GO:0003727
GO:0008270
GO:0039528
GO:0009597
GO:0045087
GO:0032480
GO:0002230
GO:0032727
GO:0032728
GO:0051091
GO:0042993
GO:0045944
GO:0030334
GO:0034344
GO:0043330
GO:0009615
GO:0039529
GO:0016032
Gene3D 1.10.533.10
3.40.50.300
InterPro IPR003593
IPR011545
IPR011029
IPR014001
IPR001650
IPR027417
IPR021673
Pfam PF00270
PF00271
PF11648
SMART SM00382
SM00487
SM00490
SUPFAM SSF52540
PROSITE PS51192
PS51194

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

acts_upstream_of_or_within

GO:0043330

response to exogenous dsRNA

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q6Q899

P

Seeded From UniProt

complete

involved_in

GO:0002735

positive regulation of myeloid dendritic cell cytokine production

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q6Q899

P

Seeded From UniProt

complete

involved_in

GO:0051607

defense response to virus

PMID:21478870[1]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:1902741

positive regulation of interferon-alpha secretion

PMID:21957149[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0071360

cellular response to exogenous dsRNA

PMID:21957149[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0060760

positive regulation of response to cytokine stimulus

PMID:21957149[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0035549

positive regulation of interferon-beta secretion

PMID:21957149[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:1904469

positive regulation of tumor necrosis factor secretion

PMID:21957149[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:2000778

positive regulation of interleukin-6 secretion

PMID:21957149[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0031625

ubiquitin protein ligase binding

PMID:26471729[3]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:Q96EQ8

F

Seeded From UniProt

complete

involved_in

GO:0032725

positive regulation of granulocyte macrophage colony-stimulating factor production

PMID:24409285[4]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0010628

positive regulation of gene expression

PMID:24409285[4]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0032757

positive regulation of interleukin-8 production

PMID:24409285[4]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0032755

positive regulation of interleukin-6 production

PMID:24409285[4]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0051091

positive regulation of DNA-binding transcription factor activity

PMID:17079289[5]

ECO:0000314

direct assay evidence used in manual assertion

P

has_regulation_target:(UniProtKB:Q14653)

Seeded From UniProt

complete

involved_in

GO:0045944

positive regulation of transcription by RNA polymerase II

PMID:17079289[5]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0032728

positive regulation of interferon-beta production

PMID:17079289[5]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0009597

detection of virus

PMID:17079289[5]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045087

innate immune response

PMID:19631370[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045087

innate immune response

PMID:19609254[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0039529

RIG-I signaling pathway

PMID:19211564[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0032728

positive regulation of interferon-beta production

PMID:19211564[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0032728

positive regulation of interferon-beta production

PMID:19609254[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0032728

positive regulation of interferon-beta production

PMID:19631370[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0032727

positive regulation of interferon-alpha production

PMID:19609254[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0032727

positive regulation of interferon-alpha production

PMID:19576794[9]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0032587

ruffle membrane

PMID:19122199[10]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0030334

regulation of cell migration

PMID:19122199[10]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0015629

actin cytoskeleton

PMID:19122199[10]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0008270

zinc ion binding

PMID:18243112[11]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0005923

bicellular tight junction

PMID:19122199[10]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:21102435[12]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0003727

single-stranded RNA binding

PMID:19211564[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003725

double-stranded RNA binding

PMID:19211564[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003725

double-stranded RNA binding

PMID:19576794[9]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0002230

positive regulation of defense response to virus by host

PMID:19609254[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

PMID:21102435[12]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:O95786

F

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

GO_REF:0000052

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0045087

innate immune response

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q6Q899
ensembl:ENSMUSP00000042433

P

Seeded From UniProt

complete

GO:0032755

positive regulation of interleukin-6 production

PMID:24409285[4]

ECO:0000314

P

In Figure 2A agonists of RIG-I poly LL and CpG-ODN show that RIG-I increases the production of Interleukin 6 in End1/E6E7 cells as shown by ELISA test.

complete
CACAO 9273

involved_in

GO:0043330

response to exogenous dsRNA

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q6Q899
ensembl:ENSMUSP00000042433

P

Seeded From UniProt

complete

GO:0032757

positive regulation of interleukin-8 production

PMID:24409285[4]

ECO:0000314

P

In Figure 2A agonists of RIG-I poly LL and CpG-ODN show that RIG-I increases the production of Interleukin 8 in End1/E6E7 cells as shown by ELISA test

complete
CACAO 9274

involved_in

GO:0032728

positive regulation of interferon-beta production

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q6Q899
ensembl:ENSMUSP00000042433

P

Seeded From UniProt

complete

GO:0010628

positive regulation of gene expression

PMID:24409285[4]

ECO:0000314

P

Figure 3 A graph 1 and Figure 3b show that when RIG-I agonists are applied there is an increased expression of p65-NF-kB when compared to the control thus showingthat RIG-I increases expression of p65 NF-kB in End1/E6E7 cells.

complete
CACAO 9277

involved_in

GO:0009615

response to virus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q6Q899
ensembl:ENSMUSP00000042433

P

Seeded From UniProt

complete

GO:0032725

positive regulation of granulocyte macrophage colony-stimulating factor production

PMID:24409285[4]

ECO:0000314

P

Figure 4 A and B show that when subjected to agonists RIG-I increases the production of GM-CSF in End1/E6E7 cells when compared to the control.

complete
CACAO 9284

enables

GO:0003727

single-stranded RNA binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q6Q899
ensembl:ENSMUSP00000042433

F

Seeded From UniProt

complete

enables

GO:0003725

double-stranded RNA binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q6Q899
ensembl:ENSMUSP00000042433

F

Seeded From UniProt

complete

enables

GO:0003690

double-stranded DNA binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q6Q899
ensembl:ENSMUSP00000042433

F

Seeded From UniProt

complete

involved_in

GO:0002735

positive regulation of myeloid dendritic cell cytokine production

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q6Q899
ensembl:ENSMUSP00000042433

P

Seeded From UniProt

complete

enables

GO:0003676

nucleic acid binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR011545

F

Seeded From UniProt

complete

enables

GO:0005524

ATP binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR011545

F

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

PMID:24590070[13]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:O95786-1

F

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

PMID:20581823[14]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:O95786-1

F

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

PMID:17190814[15]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:O95786-1

F

Seeded From UniProt

complete

enables

GO:0003725

double-stranded RNA binding

PMID:17079289[5]

ECO:0000304

author statement supported by traceable reference used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0039528

cytoplasmic pattern recognition receptor signaling pathway in response to virus

PMID:21616437[16]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0034344

regulation of type III interferon production

PMID:21616437[16]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0009615

response to virus

PMID:21616437[16]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0051607

defense response to virus

Reactome:R-HSA-8983711

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045087

innate immune response

Reactome:R-HSA-168249

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0032480

negative regulation of type I interferon production

Reactome:R-HSA-936440

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0016579

protein deubiquitination

Reactome:R-HSA-5688426

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

Reactome:R-NUL-936401
Reactome:R-HSA-990528
Reactome:R-HSA-990526
Reactome:R-HSA-937343
Reactome:R-HSA-936563
Reactome:R-HSA-936475
Reactome:R-HSA-936390
Reactome:R-HSA-936381
Reactome:R-HSA-933539
Reactome:R-HSA-933538
Reactome:R-HSA-933537
Reactome:R-HSA-933532
Reactome:R-HSA-933530
Reactome:R-HSA-933527
Reactome:R-HSA-933526
Reactome:R-HSA-933525
Reactome:R-HSA-933523
Reactome:R-HSA-918232
Reactome:R-HSA-918230
Reactome:R-HSA-918229
Reactome:R-HSA-918227
Reactome:R-HSA-918225
Reactome:R-HSA-918224
Reactome:R-HSA-8985153
Reactome:R-HSA-5696600
Reactome:R-HSA-5696564
Reactome:R-HSA-5690159
Reactome:R-HSA-168935
Reactome:R-HSA-168934
Reactome:R-HSA-168909

ECO:0000304

author statement supported by traceable reference used in manual assertion






























C

Seeded From UniProt

complete

part_of

GO:0005856

cytoskeleton

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0206
UniProtKB-SubCell:SL-0090

C

Seeded From UniProt

complete

enables

GO:0004386

helicase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0347

F

Seeded From UniProt

complete

enables

GO:0005524

ATP binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0067

F

Seeded From UniProt

complete

part_of

GO:0016020

membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0472

C

Seeded From UniProt

complete

involved_in

GO:0045087

innate immune response

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0399

P

Seeded From UniProt

complete

involved_in

GO:0016032

viral process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0945

P

Seeded From UniProt

complete

enables

GO:0000166

nucleotide binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0547

F

Seeded From UniProt

complete

part_of

GO:0042995

cell projection

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0966

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-1003

C

Seeded From UniProt

complete

enables

GO:0003723

RNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0694

F

Seeded From UniProt

complete

involved_in

GO:0002376

immune system process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0391

P

Seeded From UniProt

complete

enables

GO:0016787

hydrolase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0378

F

Seeded From UniProt

complete

part_of

GO:0005923

bicellular tight junction

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0796
UniProtKB-SubCell:SL-0265

C

Seeded From UniProt

complete

involved_in

GO:0051607

defense response to virus

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0051

P

Seeded From UniProt

complete

part_of

GO:0030054

cell junction

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0965

C

Seeded From UniProt

complete

enables

GO:0046872

metal ion binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0479

F

Seeded From UniProt

complete

part_of

GO:0032587

ruffle membrane

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0301

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. Schoggins, JW et al. (2011) A diverse range of gene products are effectors of the type I interferon antiviral response. Nature 472 481-5 PubMed GONUTS page
  2. 2.0 2.1 2.2 2.3 2.4 2.5 Zhang, Z et al. (2011) DHX9 pairs with IPS-1 to sense double-stranded RNA in myeloid dendritic cells. J. Immunol. 187 4501-8 PubMed GONUTS page
  3. Hao, Q et al. (2015) A non-canonical role of the p97 complex in RIG-I antiviral signaling. EMBO J. 34 2903-20 PubMed GONUTS page
  4. 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 Sathe, A & Reddy, KV (2014) TLR9 and RIG-I signaling in human endocervical epithelial cells modulates inflammatory responses of macrophages and dendritic cells in vitro. PLoS ONE 9 e83882 PubMed GONUTS page
  5. 5.0 5.1 5.2 5.3 5.4 Mibayashi, M et al. (2007) Inhibition of retinoic acid-inducible gene I-mediated induction of beta interferon by the NS1 protein of influenza A virus. J. Virol. 81 514-24 PubMed GONUTS page
  6. 6.0 6.1 Chiu, YH et al. (2009) RNA polymerase III detects cytosolic DNA and induces type I interferons through the RIG-I pathway. Cell 138 576-91 PubMed GONUTS page
  7. 7.0 7.1 7.2 7.3 Ablasser, A et al. (2009) RIG-I-dependent sensing of poly(dA:dT) through the induction of an RNA polymerase III-transcribed RNA intermediate. Nat. Immunol. 10 1065-72 PubMed GONUTS page
  8. 8.0 8.1 8.2 8.3 Bamming, D & Horvath, CM (2009) Regulation of signal transduction by enzymatically inactive antiviral RNA helicase proteins MDA5, RIG-I, and LGP2. J. Biol. Chem. 284 9700-12 PubMed GONUTS page
  9. 9.0 9.1 Schlee, M et al. (2009) Recognition of 5' triphosphate by RIG-I helicase requires short blunt double-stranded RNA as contained in panhandle of negative-strand virus. Immunity 31 25-34 PubMed GONUTS page
  10. 10.0 10.1 10.2 10.3 Mukherjee, A et al. (2009) Retinoic acid-induced gene-1 (RIG-I) associates with the actin cytoskeleton via caspase activation and recruitment domain-dependent interactions. J. Biol. Chem. 284 6486-94 PubMed GONUTS page
  11. Cui, S et al. (2008) The C-terminal regulatory domain is the RNA 5'-triphosphate sensor of RIG-I. Mol. Cell 29 169-79 PubMed GONUTS page
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