GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
HUMAN:DDX58
Contents
Species (Taxon ID) | Homo sapiens (Human). (9606) | |
Gene Name(s) | DDX58 | |
Protein Name(s) | Probable ATP-dependent RNA helicase DDX58
DEAD box protein 58 RIG-I-like receptor 1 RLR-1 Retinoic acid-inducible gene 1 protein RIG-1 Retinoic acid-inducible gene I protein RIG-I | |
External Links | ||
UniProt | O95786 | |
EMBL | AF038963 AL353671 AL161783 AL161783 AL353671 CH471071 BC132786 BC136610 BX647917 AL137608 | |
CCDS | CCDS6526.1 | |
PIR | T46312 | |
RefSeq | NP_055129.2 | |
UniGene | Hs.190622 | |
PDB | 2LWD 2LWE 2QFB 2QFD 2RMJ 2YKG 3LRN 3LRR 3NCU 3OG8 3TMI 3ZD6 3ZD7 4AY2 4BPB 4NQK 4ON9 4P4H | |
PDBsum | 2LWD 2LWE 2QFB 2QFD 2RMJ 2YKG 3LRN 3LRR 3NCU 3OG8 3TMI 3ZD6 3ZD7 4AY2 4BPB 4NQK 4ON9 4P4H | |
ProteinModelPortal | O95786 | |
SMR | O95786 | |
BioGrid | 117121 | |
DIP | DIP-35444N | |
IntAct | O95786 | |
MINT | MINT-2799116 | |
STRING | 9606.ENSP00000369213 | |
PhosphoSite | O95786 | |
MaxQB | O95786 | |
PaxDb | O95786 | |
PRIDE | O95786 | |
Ensembl | ENST00000379883 | |
GeneID | 23586 | |
KEGG | hsa:23586 | |
UCSC | uc003zra.3 uc010mjk.1 | |
CTD | 23586 | |
GeneCards | GC09M032447 | |
HGNC | HGNC:19102 | |
HPA | CAB012643 HPA047193 | |
MIM | 609631 | |
neXtProt | NX_O95786 | |
PharmGKB | PA134994272 | |
eggNOG | COG1111 | |
GeneTree | ENSGT00510000046789 | |
HOGENOM | HOG000230911 | |
HOVERGEN | HBG052325 | |
InParanoid | O95786 | |
KO | K12646 | |
OMA | KCKAFAC | |
PhylomeDB | O95786 | |
TreeFam | TF330258 | |
Reactome | REACT_115831 REACT_24938 REACT_24969 REACT_25026 REACT_25039 REACT_25271 REACT_25359 | |
ChiTaRS | DDX58 | |
EvolutionaryTrace | O95786 | |
GeneWiki | RIG-I | |
GenomeRNAi | 23586 | |
NextBio | 46208 | |
PRO | PR:O95786 | |
Proteomes | UP000005640 | |
Bgee | O95786 | |
CleanEx | HS_DDX58 | |
ExpressionAtlas | O95786 | |
Genevestigator | O95786 | |
GO | GO:0015629 GO:0005737 GO:0005829 GO:0032587 GO:0005923 GO:0005524 GO:0003690 GO:0003725 GO:0004386 GO:0042802 GO:0003727 GO:0008270 GO:0039528 GO:0009597 GO:0045087 GO:0032480 GO:0002230 GO:0032727 GO:0032728 GO:0051091 GO:0042993 GO:0045944 GO:0030334 GO:0034344 GO:0043330 GO:0009615 GO:0039529 GO:0016032 | |
Gene3D | 1.10.533.10 3.40.50.300 | |
InterPro | IPR003593 IPR011545 IPR011029 IPR014001 IPR001650 IPR027417 IPR021673 | |
Pfam | PF00270 PF00271 PF11648 | |
SMART | SM00382 SM00487 SM00490 | |
SUPFAM | SSF52540 | |
PROSITE | PS51192 PS51194 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
acts_upstream_of_or_within |
GO:0043330 |
response to exogenous dsRNA |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0002735 |
positive regulation of myeloid dendritic cell cytokine production |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0051607 |
defense response to virus |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:1902741 |
positive regulation of interferon-alpha secretion |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0071360 |
cellular response to exogenous dsRNA |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0060760 |
positive regulation of response to cytokine stimulus |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0035549 |
positive regulation of interferon-beta secretion |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:1904469 |
positive regulation of tumor necrosis factor secretion |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:2000778 |
positive regulation of interleukin-6 secretion |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0031625 |
ubiquitin protein ligase binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032725 |
positive regulation of granulocyte macrophage colony-stimulating factor production |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0010628 |
positive regulation of gene expression |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032757 |
positive regulation of interleukin-8 production |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032755 |
positive regulation of interleukin-6 production |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0051091 |
positive regulation of DNA-binding transcription factor activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
has_regulation_target:(UniProtKB:Q14653) |
Seeded From UniProt |
complete | ||
involved_in |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032728 |
positive regulation of interferon-beta production |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0009597 |
detection of virus |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045087 |
innate immune response |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045087 |
innate immune response |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0039529 |
RIG-I signaling pathway |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032728 |
positive regulation of interferon-beta production |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032728 |
positive regulation of interferon-beta production |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032728 |
positive regulation of interferon-beta production |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032727 |
positive regulation of interferon-alpha production |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032727 |
positive regulation of interferon-alpha production |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0032587 |
ruffle membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0030334 |
regulation of cell migration |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0015629 |
actin cytoskeleton |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0008270 |
zinc ion binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005923 |
bicellular tight junction |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0003727 |
single-stranded RNA binding |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003725 |
double-stranded RNA binding |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003725 |
double-stranded RNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0002230 |
positive regulation of defense response to virus by host |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0042802 |
identical protein binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005829 |
cytosol |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045087 |
innate immune response |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q6Q899 |
P |
Seeded From UniProt |
complete | ||
GO:0032755 |
positive regulation of interleukin-6 production |
ECO:0000314 |
P |
In Figure 2A agonists of RIG-I poly LL and CpG-ODN show that RIG-I increases the production of Interleukin 6 in End1/E6E7 cells as shown by ELISA test. |
complete | |||||
involved_in |
GO:0043330 |
response to exogenous dsRNA |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q6Q899 |
P |
Seeded From UniProt |
complete | ||
GO:0032757 |
positive regulation of interleukin-8 production |
ECO:0000314 |
P |
In Figure 2A agonists of RIG-I poly LL and CpG-ODN show that RIG-I increases the production of Interleukin 8 in End1/E6E7 cells as shown by ELISA test |
complete | |||||
involved_in |
GO:0032728 |
positive regulation of interferon-beta production |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q6Q899 |
P |
Seeded From UniProt |
complete | ||
GO:0010628 |
positive regulation of gene expression |
ECO:0000314 |
P |
Figure 3 A graph 1 and Figure 3b show that when RIG-I agonists are applied there is an increased expression of p65-NF-kB when compared to the control thus showingthat RIG-I increases expression of p65 NF-kB in End1/E6E7 cells. |
complete | |||||
involved_in |
GO:0009615 |
response to virus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q6Q899 |
P |
Seeded From UniProt |
complete | ||
GO:0032725 |
positive regulation of granulocyte macrophage colony-stimulating factor production |
ECO:0000314 |
P |
Figure 4 A and B show that when subjected to agonists RIG-I increases the production of GM-CSF in End1/E6E7 cells when compared to the control. |
complete | |||||
enables |
GO:0003727 |
single-stranded RNA binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q6Q899 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0003725 |
double-stranded RNA binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q6Q899 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0003690 |
double-stranded DNA binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q6Q899 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0002735 |
positive regulation of myeloid dendritic cell cytokine production |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q6Q899 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0003676 |
nucleic acid binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0005524 |
ATP binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0042802 |
identical protein binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0042802 |
identical protein binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0042802 |
identical protein binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003725 |
double-stranded RNA binding |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0039528 |
cytoplasmic pattern recognition receptor signaling pathway in response to virus |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0034344 |
regulation of type III interferon production |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0009615 |
response to virus |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0051607 |
defense response to virus |
Reactome:R-HSA-8983711 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0045087 |
innate immune response |
Reactome:R-HSA-168249 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0032480 |
negative regulation of type I interferon production |
Reactome:R-HSA-936440 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0016579 |
protein deubiquitination |
Reactome:R-HSA-5688426 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005829 |
cytosol |
Reactome:R-NUL-936401 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
C |
Seeded From UniProt |
complete | |
part_of |
GO:0005856 |
cytoskeleton |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0004386 |
helicase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0005524 |
ATP binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0016020 |
membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045087 |
innate immune response |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0016032 |
viral process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0000166 |
nucleotide binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0042995 |
cell projection |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005886 |
plasma membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0003723 |
RNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0002376 |
immune system process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0016787 |
hydrolase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005923 |
bicellular tight junction |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0051607 |
defense response to virus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0030054 |
cell junction |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0046872 |
metal ion binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0032587 |
ruffle membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Schoggins, JW et al. (2011) A diverse range of gene products are effectors of the type I interferon antiviral response. Nature 472 481-5 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 Zhang, Z et al. (2011) DHX9 pairs with IPS-1 to sense double-stranded RNA in myeloid dendritic cells. J. Immunol. 187 4501-8 PubMed GONUTS page
- ↑ Hao, Q et al. (2015) A non-canonical role of the p97 complex in RIG-I antiviral signaling. EMBO J. 34 2903-20 PubMed GONUTS page
- ↑ 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 Sathe, A & Reddy, KV (2014) TLR9 and RIG-I signaling in human endocervical epithelial cells modulates inflammatory responses of macrophages and dendritic cells in vitro. PLoS ONE 9 e83882 PubMed GONUTS page
- ↑ 5.0 5.1 5.2 5.3 5.4 Mibayashi, M et al. (2007) Inhibition of retinoic acid-inducible gene I-mediated induction of beta interferon by the NS1 protein of influenza A virus. J. Virol. 81 514-24 PubMed GONUTS page
- ↑ 6.0 6.1 Chiu, YH et al. (2009) RNA polymerase III detects cytosolic DNA and induces type I interferons through the RIG-I pathway. Cell 138 576-91 PubMed GONUTS page
- ↑ 7.0 7.1 7.2 7.3 Ablasser, A et al. (2009) RIG-I-dependent sensing of poly(dA:dT) through the induction of an RNA polymerase III-transcribed RNA intermediate. Nat. Immunol. 10 1065-72 PubMed GONUTS page
- ↑ 8.0 8.1 8.2 8.3 Bamming, D & Horvath, CM (2009) Regulation of signal transduction by enzymatically inactive antiviral RNA helicase proteins MDA5, RIG-I, and LGP2. J. Biol. Chem. 284 9700-12 PubMed GONUTS page
- ↑ 9.0 9.1 Schlee, M et al. (2009) Recognition of 5' triphosphate by RIG-I helicase requires short blunt double-stranded RNA as contained in panhandle of negative-strand virus. Immunity 31 25-34 PubMed GONUTS page
- ↑ 10.0 10.1 10.2 10.3 Mukherjee, A et al. (2009) Retinoic acid-induced gene-1 (RIG-I) associates with the actin cytoskeleton via caspase activation and recruitment domain-dependent interactions. J. Biol. Chem. 284 6486-94 PubMed GONUTS page
- ↑ Cui, S et al. (2008) The C-terminal regulatory domain is the RNA 5'-triphosphate sensor of RIG-I. Mol. Cell 29 169-79 PubMed GONUTS page
- ↑ 12.0 12.1 Hayakawa, S et al. (2011) ZAPS is a potent stimulator of signaling mediated by the RNA helicase RIG-I during antiviral responses. Nat. Immunol. 12 37-44 PubMed GONUTS page
- ↑ Peisley, A et al. (2014) Structural basis for ubiquitin-mediated antiviral signal activation by RIG-I. Nature 509 110-4 PubMed GONUTS page
- ↑ Wang, Y et al. (2010) Structural and functional insights into 5'-ppp RNA pattern recognition by the innate immune receptor RIG-I. Nat. Struct. Mol. Biol. 17 781-7 PubMed GONUTS page
- ↑ Saito, T et al. (2007) Regulation of innate antiviral defenses through a shared repressor domain in RIG-I and LGP2. Proc. Natl. Acad. Sci. U.S.A. 104 582-7 PubMed GONUTS page
- ↑ 16.0 16.1 16.2 Loo, YM & Gale, M Jr (2011) Immune signaling by RIG-I-like receptors. Immunity 34 680-92 PubMed GONUTS page
c
d
h
i
n
p
- GO:0005886 ! plasma membrane
- GO:0032728 ! positive regulation of interferon-beta production
- GO:0060760 ! positive regulation of response to cytokine stimulus
- GO:0010628 ! positive regulation of gene expression
- GO:0032757 ! positive regulation of interleukin-8 production
- GO:0032755 ! positive regulation of interleukin-6 production
- GO:0002230 ! positive regulation of defense response to virus by host
- GO:0051091 ! positive regulation of DNA-binding transcription factor activity
- GO:1902741 ! positive regulation of interferon-alpha secretion
- GO:2000778 ! positive regulation of interleukin-6 secretion
- GO:0045944 ! positive regulation of transcription by RNA polymerase II
- GO:0002735 ! positive regulation of myeloid dendritic cell cytokine production
- GO:1904469 ! positive regulation of tumor necrosis factor secretion
- GO:0032727 ! positive regulation of interferon-alpha production
- GO:0032725 ! positive regulation of granulocyte macrophage colony-stimulating factor production
- GO:0035549 ! positive regulation of interferon-beta secretion
- Primates
- GO:0016579 ! protein deubiquitination
r