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EMENI:NIRA
Contents
| Species (Taxon ID) | Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL194 / M139) (Aspergillus nidulans). (227321) | |
| Gene Name(s) | nirA | |
| Protein Name(s) | Nitrogen assimilation transcription factor nirA | |
| External Links | ||
| UniProt | P28348 | |
| EMBL | M68900 AACD01000004 BN001308 | |
| PIR | A41697 | |
| RefSeq | XP_657702.1 | |
| ProteinModelPortal | P28348 | |
| STRING | 162425.CADANIAP00002651 | |
| EnsemblFungi | [example_ID CADANIAT00002651] | |
| GeneID | 2875872 | |
| KEGG | ani:AN0098.2 | |
| eggNOG | NOG75868 | |
| HOGENOM | HOG000176191 | |
| InParanoid | P28348 | |
| OMA | SPRRICT | |
| OrthoDB | EOG7NCVC1 | |
| Proteomes | UP000000560 | |
| GO | GO:0005634 GO:0003677 GO:0043565 GO:0000981 GO:0003700 GO:0044212 GO:0008270 GO:0006338 GO:0042128 GO:0016584 GO:0006808 GO:0006355 GO:0005982 | |
| Gene3D | 4.10.240.10 | |
| InterPro | IPR007219 IPR001138 | |
| Pfam | PF04082 PF00172 | |
| SMART | SM00906 SM00066 | |
| SUPFAM | SSF57701 | |
| PROSITE | PS00463 PS50048 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0003700 |
sequence-specific DNA binding transcription factor activity |
ECO:0000314 |
F |
Figure 6,7. These figures show that the NIRA protein binds to the cis-acting sites of niaD and niiA. |
complete | |||||
|
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0044212 |
transcription regulatory region DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0044212 |
transcription regulatory region DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0044212 |
transcription regulatory region DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0016584 |
nucleosome positioning |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006808 |
regulation of nitrogen utilization |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006808 |
regulation of nitrogen utilization |
ECO:0000270 |
expression pattern evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006338 |
chromatin remodeling |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000247 |
sequence alignment evidence used in manual assertion |
SGD:S000006169 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006357 |
regulation of transcription by RNA polymerase II |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0000981 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0000981 |
DNA-binding transcription factor activity, RNA polymerase II-specific |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006351 |
transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0008270 |
zinc ion binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0046872 |
metal ion binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0042128 |
nitrate assimilation |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 Burger, G et al. (1991) nirA, the pathway-specific regulatory gene of nitrate assimilation in Aspergillus nidulans, encodes a putative GAL4-type zinc finger protein and contains four introns in highly conserved regions. Mol. Cell. Biol. 11 5746-55 PubMed GONUTS page
- ↑ Strauss, J et al. (1998) The regulator of nitrate assimilation in ascomycetes is a dimer which binds a nonrepeated, asymmetrical sequence. Mol. Cell. Biol. 18 1339-48 PubMed GONUTS page
- ↑ Punt, PJ et al. (1995) The intergenic region between the divergently transcribed niiA and niaD genes of Aspergillus nidulans contains multiple NirA binding sites which act bidirectionally. Mol. Cell. Biol. 15 5688-99 PubMed GONUTS page
- ↑ 4.0 4.1 Narendja, F et al. (2002) Nitrate and the GATA factor AreA are necessary for in vivo binding of NirA, the pathway-specific transcriptional activator of Aspergillus nidulans. Mol. Microbiol. 44 573-83 PubMed GONUTS page
- ↑ 5.0 5.1 Berger, H et al. (2006) The GATA factor AreA regulates localization and in vivo binding site occupancy of the nitrate activator NirA. Mol. Microbiol. 59 433-46 PubMed GONUTS page
- ↑ Rand, KN & Arst, HN Jr (1978) Mutations in nirA gene of Aspergillus nidulans and nitrogen metabolism. Nature 272 732-4 PubMed GONUTS page
- ↑ Berger, H et al. (2008) Dissecting individual steps of nitrogen transcription factor cooperation in the Aspergillus nidulans nitrate cluster. Mol. Microbiol. 69 1385-98 PubMed GONUTS page
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