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ECOLI:RS6
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | rpsF | |
| Protein Name(s) | 30S ribosomal protein S6
30S ribosomal protein S6, fully modified isoform 30S ribosomal protein S6, non-modified isoform | |
| External Links | ||
| UniProt | P02358 | |
| EMBL | X04022 U14003 U00096 AP009048 | |
| PIR | C65231 | |
| RefSeq | NP_418621.5 YP_492342.1 | |
| PDB | 1EG0 1M5G 1P6G 1P87 1VS5 1VS7 2AVY 2AW7 2GY9 2GYB 2I2P 2I2U 2QAL 2QAN 2QB9 2QBB 2QBD 2QBF 2QBH 2QBJ 2QOU 2QOW 2QOY 2QP0 2VHO 2VHP 2WWL 2YKR 2Z4K 2Z4M 3DF1 3DF3 3E1A 3E1C 3FIH 3I1M 3I1O 3I1Q 3I1S 3I1Z 3I21 3IY8 3IZV 3IZW 3J00 3J0U 3J0V 3J0X 3J0Z 3J10 3J13 3J18 3J36 3J4V 3J4W 3J4Y 3J4Z 3J53 3J55 3J57 3J59 3J5B 3J5D 3J5F 3J5H 3J5J 3J5N 3J5T 3J5X 3KC4 3OAQ 3OAR 3OFA 3OFB 3OFO 3OFP 3OFX 3OFY 3OR9 3ORA 3SFS 3UOQ 4A2I 4ADV 4GAQ 4GAS 4GD1 4GD2 4KIY 4KJ0 4KJ2 4KJ4 4KJ6 4KJ8 4KJA 4KJC 4PE9 4PEA 4TOL 4TON 4TOU 4TOW 4TP0 4TP2 4TP4 4TP6 4TP8 4TPA 4TPC 4TPE 4WAO 4WAQ | |
| PDBsum | 1EG0 1M5G 1P6G 1P87 1VS5 1VS7 2AVY 2AW7 2GY9 2GYB 2I2P 2I2U 2QAL 2QAN 2QB9 2QBB 2QBD 2QBF 2QBH 2QBJ 2QOU 2QOW 2QOY 2QP0 2VHO 2VHP 2WWL 2YKR 2Z4K 2Z4M 3DF1 3DF3 3E1A 3E1C 3FIH 3I1M 3I1O 3I1Q 3I1S 3I1Z 3I21 3IY8 3IZV 3IZW 3J00 3J0U 3J0V 3J0X 3J0Z 3J10 3J13 3J18 3J36 3J4V 3J4W 3J4Y 3J4Z 3J53 3J55 3J57 3J59 3J5B 3J5D 3J5F 3J5H 3J5J 3J5N 3J5T 3J5X 3KC4 3OAQ 3OAR 3OFA 3OFB 3OFO 3OFP 3OFX 3OFY 3OR9 3ORA 3SFS 3UOQ 4A2I 4ADV 4GAQ 4GAS 4GD1 4GD2 4KIY 4KJ0 4KJ2 4KJ4 4KJ6 4KJ8 4KJA 4KJC 4PE9 4PEA 4TOL 4TON 4TOU 4TOW 4TP0 4TP2 4TP4 4TP6 4TP8 4TPA 4TPC 4TPE 4WAO 4WAQ | |
| ProteinModelPortal | P02358 | |
| SMR | P02358 | |
| DIP | DIP-10782N | |
| IntAct | P02358 | |
| MINT | MINT-1279331 | |
| STRING | 511145.b4200 | |
| ChEMBL | CHEMBL2363135 | |
| SWISS-2DPAGE | P02358 | |
| PaxDb | P02358 | |
| PRIDE | P02358 | |
| EnsemblBacteria | AAC77157 BAE78201 | |
| GeneID | 12930647 948723 | |
| KEGG | ecj:Y75_p4086 eco:b4200 | |
| PATRIC | 48667972 | |
| EchoBASE | EB0898 | |
| EcoGene | EG10905 | |
| eggNOG | COG0360 | |
| HOGENOM | HOG000040438 | |
| InParanoid | P02358 | |
| KO | K02990 | |
| OMA | ITEASPM | |
| PhylomeDB | P02358 | |
| BioCyc | EcoCyc:EG10905-MONOMER ECOL316407:JW4158-MONOMER | |
| EvolutionaryTrace | P02358 | |
| PRO | PR:P02358 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P02358 | |
| GO | GO:0022627 GO:0048027 GO:0070181 GO:0003735 GO:0006412 | |
| Gene3D | 3.30.70.60 | |
| HAMAP | MF_00360 | |
| InterPro | IPR000529 IPR020815 IPR020814 IPR014717 | |
| Pfam | PF01250 | |
| SUPFAM | SSF54995 | |
| TIGRFAMs | TIGR00166 | |
| PROSITE | PS01048 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
enables |
GO:0070181 |
small ribosomal subunit rRNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10905 |
F |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0022627 |
cytosolic small ribosomal subunit |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10905 |
C |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003735 |
structural constituent of ribosome |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN001077198 |
F |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0022627 |
cytosolic small ribosomal subunit |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0070181 |
small ribosomal subunit rRNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0048027 |
mRNA 5'-UTR binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0022627 |
cytosolic small ribosomal subunit |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005829 |
cytosol |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005829 |
cytosol |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003735 |
structural constituent of ribosome |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR000529 |
F |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005840 |
ribosome |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR000529 |
C |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006412 |
translation |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR000529 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0019843 |
rRNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR000529 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0019843 |
rRNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000084122 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006412 |
translation |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000084122 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003723 |
RNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005840 |
ribosome |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0019843 |
rRNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Wittmann-Liebold, B (1973) Studies on the primary structure of 20 proteins from Escherichia coli ribosomes by means of an improved protein sequenator. FEBS Lett. 36 247-9 PubMed GONUTS page
- ↑ Gregory, RJ et al. (1984) Interaction of ribosomal proteins S6, S8, S15 and S18 with the central domain of 16 S ribosomal RNA from Escherichia coli. J. Mol. Biol. 178 287-302 PubMed GONUTS page
- ↑ Matelska, D et al. (2013) S6:S18 ribosomal protein complex interacts with a structural motif present in its own mRNA. RNA 19 1341-8 PubMed GONUTS page
- ↑ Hindennach, I et al. (1971) Ribosomal proteins. Isolation of the proteins from 30S ribosomal subunits of Escherichia coli. Eur. J. Biochem. 23 7-11 PubMed GONUTS page
- ↑ Ishihama, Y et al. (2008) Protein abundance profiling of the Escherichia coli cytosol. BMC Genomics 9 102 PubMed GONUTS page
- ↑ Lopez-Campistrous, A et al. (2005) Localization, annotation, and comparison of the Escherichia coli K-12 proteome under two states of growth. Mol. Cell Proteomics 4 1205-9 PubMed GONUTS page
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