GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
ECOLI:EFTS
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | tsf | |
| Protein Name(s) | Elongation factor Ts
EF-Ts | |
| External Links | ||
| UniProt | P0A6P1 | |
| EMBL | V00343 D13334 U00096 AP009048 U70214 | |
| PIR | A03525 | |
| RefSeq | NP_414712.1 YP_488472.1 | |
| PDB | 1EFU 3MMP 4Q7J | |
| PDBsum | 1EFU 3MMP 4Q7J | |
| ProteinModelPortal | P0A6P1 | |
| SMR | P0A6P1 | |
| DIP | DIP-31835N | |
| IntAct | P0A6P1 | |
| MINT | MINT-1273899 | |
| STRING | 511145.b0170 | |
| PhosSite | P0810442 | |
| SWISS-2DPAGE | P0A6P1 | |
| PaxDb | P0A6P1 | |
| PRIDE | P0A6P1 | |
| EnsemblBacteria | AAC73281 BAB96746 | |
| GeneID | 12931801 944866 | |
| KEGG | ecj:Y75_p0166 eco:b0170 | |
| PATRIC | 32115449 | |
| EchoBASE | EB1026 | |
| EcoGene | EG11033 | |
| eggNOG | COG0264 | |
| HOGENOM | HOG000220986 | |
| InParanoid | P0A6P1 | |
| KO | K02357 | |
| OMA | HSQIAVI | |
| OrthoDB | EOG66B42N | |
| PhylomeDB | P0A6P1 | |
| BioCyc | EcoCyc:EG11033-MONOMER ECOL316407:JW0165-MONOMER | |
| EvolutionaryTrace | P0A6P1 | |
| PRO | PR:P0A6P1 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P0A6P1 | |
| GO | GO:0005737 GO:0016020 GO:0005085 GO:0003746 GO:0008270 GO:0043547 | |
| Gene3D | 3.30.479.20 | |
| HAMAP | MF_00050 | |
| InterPro | IPR001816 IPR014039 IPR018101 IPR009060 IPR000449 | |
| PANTHER | PTHR11741 | |
| Pfam | PF00889 PF00627 | |
| SUPFAM | SSF46934 SSF54713 | |
| TIGRFAMs | TIGR00116 | |
| PROSITE | PS01126 PS01127 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
part_of |
GO:0016020 |
membrane |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003746 |
translation elongation factor activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000201459 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0008270 |
zinc ion binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005829 |
cytosol |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005829 |
cytosol |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005829 |
cytosol |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0005085 |
guanyl-nucleotide exchange factor activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003746 |
translation elongation factor activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006414 |
translational elongation |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006414 |
translational elongation |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000075861 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003746 |
translation elongation factor activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000075861 |
F |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000075861 |
C |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003746 |
translation elongation factor activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006414 |
translational elongation |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006412 |
translation |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Lasserre, JP et al. (2006) A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Electrophoresis 27 3306-21 PubMed GONUTS page
- ↑ Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Katayama, A et al. (2002) Systematic search for zinc-binding proteins in Escherichia coli. Eur. J. Biochem. 269 2403-13 PubMed GONUTS page
- ↑ Ishihama, Y et al. (2008) Protein abundance profiling of the Escherichia coli cytosol. BMC Genomics 9 102 PubMed GONUTS page
- ↑ Zhang, N et al. (2007) Comparison of SDS- and methanol-assisted protein solubilization and digestion methods for Escherichia coli membrane proteome analysis by 2-D LC-MS/MS. Proteomics 7 484-93 PubMed GONUTS page
- ↑ Lopez-Campistrous, A et al. (2005) Localization, annotation, and comparison of the Escherichia coli K-12 proteome under two states of growth. Mol. Cell Proteomics 4 1205-9 PubMed GONUTS page
- ↑ Gromadski, KB et al. (2002) Kinetic mechanism of elongation factor Ts-catalyzed nucleotide exchange in elongation factor Tu. Biochemistry 41 162-9 PubMed GONUTS page
