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DROME:ODD

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Species (Taxon ID) Drosophila melanogaster (Fruit fly). (7227)
Gene Name(s) odd
Protein Name(s) Protein odd-skipped
External Links
UniProt P23803
EMBL X57480
AE014134
BT015214
PIR S11998
RefSeq NP_722922.1
UniGene Dm.290
ProteinModelPortal P23803
SMR P23803
BioGrid 59791
IntAct P23803
MINT MINT-759527
STRING 7227.FBpp0077246
PaxDb P23803
EnsemblMetazoa FBtr0077557
GeneID 33583
KEGG dme:Dmel_CG3851
CTD 33583
FlyBase FBgn0002985
eggNOG COG5048
GeneTree ENSGT00760000119344
InParanoid P23803
KO K09215
OMA HPAISEE
OrthoDB EOG754HQ2
SignaLink P23803
GenomeRNAi 33583
NextBio 784311
Proteomes UP000000803
Bgee P23803
GO GO:0005634
GO:0003677
GO:0046872
GO:0003700
GO:0007350
GO:0016348
GO:0007443
GO:0000122
GO:0045892
GO:0007366
GO:0045944
GO:0045893
GO:0006357
GO:0006351
Gene3D 3.30.160.60
InterPro IPR007087
IPR015880
IPR013087
Pfam PF00096
SMART SM00355
PROSITE PS00028
PS50157

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0007389

pattern specification process

PMID:21693522[1]

ECO:0000315

P

See Figure 5: "observed clear defects in pair-rule gene expression patterns in slp and prd mutants"

complete
CACAO 3718

involved_in

GO:0007389

pattern specification process

PMID:21693522[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045944

positive regulation of transcription by RNA polymerase II

PMID:9806933[2]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045893

positive regulation of transcription, DNA-templated

PMID:9806933[2]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045892

negative regulation of transcription, DNA-templated

PMID:9806933[2]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0007443

Malpighian tubule morphogenesis

PMID:17011543[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0007366

periodic partitioning by pair rule gene

PMID:7750646[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0007350

blastoderm segmentation

PMID:2120051[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

PMID:2120051[5]

ECO:0000303

author statement without traceable support used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0000122

negative regulation of transcription by RNA polymerase II

PMID:7750646[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0000122

negative regulation of transcription by RNA polymerase II

PMID:9806933[2]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0048619

embryonic hindgut morphogenesis

PMID:21873635[6]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0004893
FB:FBgn0024244
PANTHER:PTN002306374

P

Seeded From UniProt

complete

involved_in

GO:0045944

positive regulation of transcription by RNA polymerase II

PMID:21873635[6]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0002985
MGI:MGI:1344424
MGI:MGI:1930813
PANTHER:PTN000367524

P

Seeded From UniProt

complete

involved_in

GO:0016348

imaginal disc-derived leg joint morphogenesis

PMID:21873635[6]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0002985
FB:FBgn0004892
FB:FBgn0004893
FB:FBgn0024244
PANTHER:PTN002306374

P

Seeded From UniProt

complete

involved_in

GO:0009880

embryonic pattern specification

PMID:21873635[6]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0004893
FB:FBgn0024244
PANTHER:PTN002306374

P

Seeded From UniProt

complete

enables

GO:0000977

RNA polymerase II regulatory region sequence-specific DNA binding

PMID:21873635[6]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:1930813
PANTHER:PTN000367524

F

Seeded From UniProt

complete

involved_in

GO:0000122

negative regulation of transcription by RNA polymerase II

PMID:21873635[6]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0002985
MGI:MGI:1344424
MGI:MGI:1930813
PANTHER:PTN000367524

P

Seeded From UniProt

complete

involved_in

GO:0016348

imaginal disc-derived leg joint morphogenesis

PMID:14597202[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0000122

negative regulation of transcription by RNA polymerase II

PMID:10885752[8]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006357

regulation of transcription by RNA polymerase II

PMID:2120051[5]

ECO:0000250

sequence similarity evidence used in manual assertion

P

Seeded From UniProt

Missing: with/from

enables

GO:0003700

DNA-binding transcription factor activity

PMID:2120051[5]

ECO:0000250

sequence similarity evidence used in manual assertion

F

Seeded From UniProt

Missing: with/from

part_of

GO:0005634

nucleus

PMID:2120051[5]

ECO:0000250

sequence similarity evidence used in manual assertion

C

Seeded From UniProt

Missing: with/from

enables

GO:0003676

nucleic acid binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR013087

F

Seeded From UniProt

complete

involved_in

GO:0007275

multicellular organism development

GO_REF:0000037
GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0562
UniProtKB-KW:KW-0217

P

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0238

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

enables

GO:0046872

metal ion binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0479

F

Seeded From UniProt

complete

involved_in

GO:0007366

periodic partitioning by pair rule gene

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0562

P

Seeded From UniProt

complete

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Notes

References

See Help:References for how to manage references in GONUTS.

  1. ↑ 1.0 1.1 Schroeder, MD et al. (2011) How to make stripes: deciphering the transition from non-periodic to periodic patterns in Drosophila segmentation. Development 138 3067-78 PubMed GONUTS page
  2. ↑ 2.0 2.1 2.2 2.3 Saulier-Le Dréan, B et al. (1998) Dynamic changes in the functions of Odd-skipped during early Drosophila embryogenesis. Development 125 4851-61 PubMed GONUTS page
  3. ↑ Tena, JJ et al. (2007) Odd-skipped genes encode repressors that control kidney development. Dev. Biol. 301 518-31 PubMed GONUTS page
  4. ↑ 4.0 4.1 Mullen, JR & DiNardo, S (1995) Establishing parasegments in Drosophila embryos: roles of the odd-skipped and naked genes. Dev. Biol. 169 295-308 PubMed GONUTS page
  5. ↑ 5.0 5.1 5.2 5.3 5.4 Coulter, DE et al. (1990) Molecular analysis of odd-skipped, a zinc finger encoding segmentation gene with a novel pair-rule expression pattern. EMBO J. 9 3795-804 PubMed GONUTS page
  6. ↑ 6.0 6.1 6.2 6.3 6.4 6.5 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
  7. ↑ Hao, I et al. (2003) The odd-skipped family of zinc finger genes promotes Drosophila leg segmentation. Dev. Biol. 263 282-95 PubMed GONUTS page
  8. ↑ Bouchard, M et al. (2000) Combinatorial activity of pair-rule proteins on the Drosophila gooseberry early enhancer. Dev. Biol. 222 135-46 PubMed GONUTS page
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