It is now the 1st OPEN Period for CACAO Fall 2017! It will end on Sunday September 24, 2017 at 11:59 pm CDT
This is your chance to make annotations OR challenge other team's annotations. You may also DEFEND or suggest improvements to your own annotations IF they have been challenged. Please note, although we ENCOURAGE challenges, an excess of identical challenges that do not appear to be applicable to the annotation or well thought out will be considered spam and ignored.

Have any questions? Please email us at ecoliwiki@gmail.com

DANRE:F1QZK8

From GONUTS
Jump to: navigation, search
Species (Taxon ID) Danio rerio (Zebrafish) (Brachydanio rerio). (7955)
Gene Name(s) No Information Provided.
Protein Name(s) Uncharacterized protein (ECO:0000313 with Ensembl:ENSDARP00000105703)
External Links
UniProt F1QZK8
EMBL CABZ01051477
CU694532
RefSeq XP_005173590.1
Ensembl ENSDART00000130045
GeneID 58136
KEGG dre:58136
CTD 5089
ZFIN ZDB-GENE-000405-5
GeneTree ENSGT00390000016426
InParanoid F1QZK8
OMA SDHSENS
TreeFam TF314340
Proteomes UP000000437
Bgee F1QZK8
GO GO:0005634
GO:0043565
GO:0003700
GO:0007420
GO:0060059
GO:0007507
GO:0030901
GO:0048741
Gene3D 1.10.10.60
InterPro IPR017970
IPR001356
IPR009057
IPR005542
Pfam PF00046
PF03792
SMART SM00389
SUPFAM SSF46689
PROSITE PS00027
PS50071

Annotations

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003007

heart morphogenesis

PMID:19607825[1]

IGI: Inferred from Genetic Interaction

ZFIN:ZDB-MRPHLNO-070529-1
ZFIN:ZDB-MRPHLNO-070529-2
ZFIN:ZDB-MRPHLNO-070529-3
ZFIN:ZDB-MRPHLNO-070529-4
ZFIN:ZDB-MRPHLNO-080930-4

P

Seeded From UniProt

complete

GO:0003677

DNA binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001356
InterPro:IPR009057

F

Seeded From UniProt

complete

GO:0003677

DNA binding

GO_REF:0000038

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0238

F

Seeded From UniProt

complete

GO:0003677

DNA binding

GO_REF:0000038

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0371

F

Seeded From UniProt

complete

GO:0003700

transcription factor activity, sequence-specific DNA binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005542

F

Seeded From UniProt

complete

GO:0005634

nucleus

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005542

C

Seeded From UniProt

complete

GO:0005634

nucleus

GO_REF:0000038

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0539

C

Seeded From UniProt

complete

GO:0005634

nucleus

GO_REF:0000040

IEA: Inferred from Electronic Annotation

UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

GO:0006355

regulation of transcription, DNA-templated

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017970

P

Seeded From UniProt

complete

GO:0007420

brain development

PMID:12431378[2]

IMP: Inferred from Mutant Phenotype

P

Seeded From UniProt

complete

GO:0030901

midbrain development

PMID:17634100[3]

IGI: Inferred from Genetic Interaction

ZFIN:ZDB-GENO-071026-2
ZFIN:ZDB-MRPHLNO-070529-1
ZFIN:ZDB-MRPHLNO-070529-3

P

Seeded From UniProt

complete

GO:0043565

sequence-specific DNA binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017970

F

Seeded From UniProt

complete

GO:0048741

skeletal muscle fiber development

PMID:17699609[4]

IGI: Inferred from Genetic Interaction

ZFIN:ZDB-GENE-980526-166
ZFIN:ZDB-MRPHLNO-070529-1
ZFIN:ZDB-MRPHLNO-070529-2
ZFIN:ZDB-MRPHLNO-070529-3
ZFIN:ZDB-MRPHLNO-070529-4

P

Seeded From UniProt

complete

GO:0048741

skeletal muscle fiber development

PMID:17699609[4]

IGI: Inferred from Genetic Interaction

ZFIN:ZDB-MRPHLNO-070529-1
ZFIN:ZDB-MRPHLNO-070529-2
ZFIN:ZDB-MRPHLNO-070529-3
ZFIN:ZDB-MRPHLNO-070529-4

P

Seeded From UniProt

complete

GO:0048741

skeletal muscle fiber development

PMID:17699609[4]

IGI: Inferred from Genetic Interaction

ZFIN:ZDB-MRPHLNO-070529-1
ZFIN:ZDB-MRPHLNO-070529-2
ZFIN:ZDB-MRPHLNO-070529-3
ZFIN:ZDB-MRPHLNO-070529-4
ZFIN:ZDB-MRPHLNO-071210-2
ZFIN:ZDB-MRPHLNO-071210-3

P

Seeded From UniProt

complete

GO:0055007

cardiac muscle cell differentiation

PMID:19607825[1]

IGI: Inferred from Genetic Interaction

ZFIN:ZDB-MRPHLNO-070529-1
ZFIN:ZDB-MRPHLNO-070529-2
ZFIN:ZDB-MRPHLNO-070529-3
ZFIN:ZDB-MRPHLNO-070529-4

P

Seeded From UniProt

complete

GO:0060059

embryonic retina morphogenesis in camera-type eye

PMID:17634100[3]

IGI: Inferred from Genetic Interaction

ZFIN:ZDB-GENO-071026-2
ZFIN:ZDB-MRPHLNO-070529-1
ZFIN:ZDB-MRPHLNO-070529-3

P

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 Maves, L et al. (2009) Pbx acts with Hand2 in early myocardial differentiation. Dev. Biol. 333 409-18 PubMed GONUTS page
  2. Waskiewicz, AJ et al. (2002) Eliminating zebrafish pbx proteins reveals a hindbrain ground state. Dev. Cell 3 723-33 PubMed GONUTS page
  3. 3.0 3.1 French, CR et al. (2007) Pbx homeodomain proteins pattern both the zebrafish retina and tectum. BMC Dev. Biol. 7 85 PubMed GONUTS page
  4. 4.0 4.1 4.2 Maves, L et al. (2007) Pbx homeodomain proteins direct Myod activity to promote fast-muscle differentiation. Development 134 3371-82 PubMed GONUTS page