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Category talk:CACAO Spring 2017

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QuickGO exercise




GO Term (GitHub) Requests

Ask us for help if this is your first Term Request. You'll need to read through this NTR Guide as well. Making an entry here only reminds us you have made a term request on the proper page, this table is not where the GO Consortium will address your requests- you must do that on GitHub.

If you do not yet have a GitHub ticket for your request, you should not edit this table.

User Type GO ID term name GitHub Link GONUTS Link Status Notes

LoganMcCurry

Improve ontology structure

GO:0031297

replication fork processing

https://github.com/geneontology/go-ontology/issues/12980

accepted by GOC

Update: Term was merged with existing term.

sarahcouv

New term request

GO:0120026

host cell uropod

https://github.com/geneontology/go-ontology/issues/13201

accepted by GOC

CSears

New term request

https://github.com/geneontology/go-ontology/issues/13342

requested

NTR: Reproduction of symbiont in host Aspect: Biological process. Definition: The production of new individuals that contain some portion of genetic material inherited from one or more parent organisms, occurring within the cells or tissues of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.

Growth terms (such asGO:0044110, growth involved in symbiotic interaction) are defined as only the increase in size or mass of an organism, while development terms (such asGO:0044111, development involved in symbiotic interaction) encompass progression from one condition to another. Especially in bacterial pathogenesis, reproduction and reproductive processes are important aspects of the symbiotic interaction.

One (of many) possible references is PMID:23460907[1], as well as PMID:25713147[2].

LoganMcCurry

New term request

GO:0061866

negative regulation of histone H3-S10 phosphorylation

https://github.com/geneontology/go-ontology/issues/13327

accepted by GOC

NTR for "negative regulation of histone H3-S10 phosphorylation."

GO: negative regulation of histone H3-S10 phosphorylation Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of the addition of one or more phosphate groups to histone H3 at a serine residue at position 10. Aspect: Biological Process Child term ofGO:0033128 negative regulation of histone phosphorylation PMID:27521428[3] "A wide reprogramming of histone H3 modifications during male meiosis I in rice is dependent on the Argonaute protein MEL1" specifically Figure 5 in the organism Oryza sativa.

LoganMcCurry

New term request

GO:0120030

https://github.com/geneontology/go-ontology/issues/13375

accepted by GOC

NTR: positive regulation of cilium beat frequency involved in ciliary motility

GO: positive regulation of cilium beat frequency involved in ciliary motility Definition: Any process that positively modulates the frequency of cilium beating involved in ciliary motility. Aspect: Biological Process Child term ofGO:0060296 regulation of cilium beat frequency involved in ciliary motility PMID:28035044[4] "A role for Gle1, a regulator of DEAD-box RNA helicases, at centrosomes and basal bodies" specifically Figure 4 in the organism Zebrafish.

TableEdit Samples

Page Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

References

See Help:References for how to manage references in GONUTS.

  1. Ling, J et al. (2013) Aerobactin synthesis genes iucA and iucC contribute to the pathogenicity of avian pathogenic Escherichia coli O2 strain E058. PLoS ONE 8 e57794 PubMed GONUTS page
  2. Nagarajan, SN et al. (2015) Protein kinase A (PknA) of Mycobacterium tuberculosis is independently activated and is critical for growth in vitro and survival of the pathogen in the host. J. Biol. Chem. 290 9626-45 PubMed GONUTS page
  3. Liu, H & Nonomura, KI (2016) A wide reprogramming of histone H3 modifications during male meiosis I in rice is dependent on the Argonaute protein MEL1. J. Cell. Sci. 129 3553-3561 PubMed GONUTS page
  4. Jao, LE et al. (2017) A role for Gle1, a regulator of DEAD-box RNA helicases, at centrosomes and basal bodies. Mol. Biol. Cell 28 120-127 PubMed GONUTS page