GONUTS has been updated to MW1.29.2. Most things seem to be working but be sure to report problems.

The 3rd ANNOTATION Period for CACAO Fall 2018 has BEGUN! It will end on Sunday October 21, 2018 at 11:59 pm CDT
REMEMBER, any annotations to "____ BINDING" or "RESPONSE TO _____" will be marked as unacceptable for CACAO students according to the CACAO rules.

Have any questions? Please email us at ecoliwiki@gmail.com

Category:CACAO Spring 2017

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cacao.jpg
CACAO
the intercollegiate annotation competition!
The Community Assessment of Community Annotation with Ontologies (CACAO) is a competition for teams of undergrads around the world to improve the functional annotation of genes. CACAO was developed and is currently run at Texas A&M University, along with many other institutions. If you are interested in participating, please email us - ecoliwiki@gmail.com.
TAMU.jpg

Scoreboard

Calendar of Rounds

Inning Activity Start End Notes

0

instruction

  • 2017-01-15
  • 06:00 PM
  • 2017-01-29
  • 05:59 PM

First class, introduction to annotation/ontologies

Second week of intro at TAMU

1

annotation

  • 2017-01-29
  • 06:00 PM
  • 2017-02-05
  • 05:59 PM

TAMU Goal: 5 attempted annotations by end of inning

1

challenge

  • 2017-02-05
  • 06:00 PM
  • 2017-02-12
  • 05:59 PM

TAMU Goal: 3 challenges by end of round

2

annotation

  • 2017-02-12
  • 06:00 PM
  • 2017-02-19
  • 05:59 PM

2

challenge

  • 2017-02-19
  • 06:00 PM
  • 2017-02-26
  • 05:59 PM

TAMU Goal: 8 accepted annotations by end of round

3

annotation

  • 2017-02-26
  • 06:00 PM
  • 2017-03-05
  • 05:59 PM

3

challenge

  • 2017-03-05
  • 06:00 PM
  • 2017-03-12
  • 05:59 PM

TAMU Goal: 12 accepted annotations by end of round

3

open

  • 2017-03-12
  • 06:00 PM
  • 2017-03-19
  • 05:59 PM

TAMU Spring Break

TAMU Goal: 10 challenges by end of round

4

annotation

  • 2017-03-19
  • 06:00 PM
  • 2017-03-26
  • 05:59 PM

4

challenge

  • 2017-03-26
  • 06:00 PM
  • 2017-04-02
  • 05:59 PM

TAMU Goal: 17 accepted annotations by end of round

5

annotation

  • 2017-04-02
  • 06:00 PM
  • 2017-04-09
  • 05:59 PM

TAMU Goal: 20 accepted annotations by end of round

5

challenge

  • 2017-04-09
  • 06:00 PM
  • 2017-04-16
  • 05:59 PM

TAMU Goal: 20 accepted annotations by end of round

5

open

  • 2017-04-16
  • 06:00 PM
  • 2017-04-23
  • 05:59 PM

Last chance to enter new annotations

TAMU Requirement: 20 accepted annotations by end of round

instruction

  • 2017-04-23
  • 06:00 PM
  • 2017-04-30
  • 05:59 PM

Last day of class at TAMU, evaluations & competition results

CACAO Spring 2017

Help For Students

  • Don't forget - no binding terms (i.e. DNA binding, etc) & no response to terms (i.e. response to heat, etc)
  • For more help on evidence codes
Look through the helpful handouts for students, this includes printable documents
  • Confused as to what is required in the notes?
  1. Organism (and strain if applicable)
  2. Gene/Protein name as UniProt refers to it
  3. Gene/Protein name as the paper refers to it
  4. Table(s) and/or Figure(s)

Participating schools

  • Texas A&M University
  • more joining soon!

Training Information

Background info is at the About CACAO page.

Virus-related GO terms

  • For those of you interested in annotating proteins from viruses and phages:

Subcategories

This category has the following 18 subcategories, out of 18 total.

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Internal error - GONUTS

GONUTS has been updated to MW1.29.2. Most things seem to be working but be sure to report problems.

The 3rd ANNOTATION Period for CACAO Fall 2018 has BEGUN! It will end on Sunday October 21, 2018 at 11:59 pm CDT
REMEMBER, any annotations to "____ BINDING" or "RESPONSE TO _____" will be marked as unacceptable for CACAO students according to the CACAO rules.

Have any questions? Please email us at ecoliwiki@gmail.com

Internal error

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Backtrace:

#0 /var/www/html/go/wiki/includes/jobqueue/Job.php(74): CirrusSearch\Job\ElasticaWrite->__construct(Title, boolean)
#1 /var/www/html/go/wiki/includes/jobqueue/JobQueueDB.php(297): Job::factory(string, Title, boolean, string)
#2 /var/www/html/go/wiki/includes/jobqueue/JobQueue.php(373): JobQueueDB->doPop()
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#4 /var/www/html/go/wiki/includes/jobqueue/JobRunner.php(162): JobQueueGroup->pop(integer, integer, array)
#5 /var/www/html/go/wiki/includes/MediaWiki.php(972): JobRunner->run(array)
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#12 {main}

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