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CHLRE:DC2L1

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Species (Taxon ID) Chlamydomonas reinhardtii (Chlamydomonas smithii). (3055)
Gene Name(s) D1BLIC
Protein Name(s) Cytoplasmic dynein 2 light intermediate chain 1

Dynein 1b light intermediate chain

External Links
UniProt Q7XA07
EMBL AF547995
AY157841
AY616759
DS496130
RefSeq XP_001694720.1
UniGene Cre.7581
ProteinModelPortal Q7XA07
STRING 3055.JGI130394
PRIDE Q7XA07
EnsemblPlants EDP02304
GeneID 5720382
KEGG cre:CHLREDRAFT_130394
eggNOG NOG256387
InParanoid Q7XA07
KO K10417
OMA ANIWELA
Proteomes UP000006906
GO GO:0005858
GO:0005930
GO:0030286
GO:0005874
GO:0031514
GO:0005886
GO:0005525
GO:0003774
GO:0044458
GO:0007275
GO:0007264
Gene3D 3.40.50.300
InterPro IPR013684
IPR027417
Pfam PF08477
SUPFAM SSF52540

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0042073

intraflagellar transport

PMID:16527740[1]

ECO:0000315

P

Immunomicroscopy shows migration of protein anterograde and accumulation at tip figure 2 in IFT 172 mutant

suggest child term _retrograde definition intraflagella transport movement in an retrograde direction

complete

GO:0030990

intraflagellar transport particle

PMID:16527740[1]

ECO:0000021

C

Antibody to LIC associates with cDynein1b, fig 3

suggest child term_cdynein1b protein is part of the intraflagellar transport particle cdynein1b

Missing: with/from

GO:0019861

flagellum

PMID:16527740[1]

ECO:0000314

C

Immunoblotting shows presence of protein within flagella lysates figure 1.

complete

GO:0032403

protein complex binding

PMID 17895364

ECO:0000021

F

Figure 2c. Axenomal extract co-immunoppts Q7xa07

Suggest child term_ flagella axenomal binding Definition shows flagella axemonal binding


Missing: with/from, reference

GO:0019861

flagellum

PMID 17895364

ECO:0000314

C

Figure 5A and B shows presence with immunopptation of flagella matrix extract

Suggested child term_ flagella cytosol/matrix Definition: Located within flagella matrix/cytosol

Missing: reference

GO:0035086

flagellar axoneme

PMID 17895364

ECO:0000314

C

Figure 2 B run 5 shows q7xa07 in axenomal extract

Missing: reference

GO:0005515

protein binding

PMID 17895364

ECO:0000021

UniProtKB:A9XPA6


F

Fig 6c shows protein brought down by anti IFT 139 beads

Missing: reference

involved_in

GO:0044458

motile cilium assembly

PMID:16527740[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

colocalizes_with

GO:0036064

ciliary basal body

PMID:12802074[2]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0031514

motile cilium

PMID:16527740[1]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0030286

dynein complex

PMID:17895364[3]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0030990

intraciliary transport particle

PMID:12802074[2]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0030990

intraciliary transport particle

PMID:17895364[3]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005868

cytoplasmic dynein complex

PMID:12802074[2]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0045504

dynein heavy chain binding

PMID:21873635[4]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000326085
RGD:1310286

F

Seeded From UniProt

complete

part_of

GO:0036064

ciliary basal body

PMID:21873635[4]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000326085
UniProtKB:Q7XA07
UniProtKB:Q8TCX1
WB:WBGene00006960

C

Seeded From UniProt

complete

involved_in

GO:0035735

intraciliary transport involved in cilium assembly

PMID:21873635[4]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000326085
UniProtKB:Q8TCX1

P

Seeded From UniProt

complete

involved_in

GO:0035721

intraciliary retrograde transport

PMID:21873635[4]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000326085
WB:WBGene00006960

P

Seeded From UniProt

complete

contributes_to

GO:0008569

ATP-dependent microtubule motor activity, minus-end-directed

PMID:21873635[4]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000326085
UniProtKB:Q8TCX1

F

Seeded From UniProt

complete

part_of

GO:0005930

axoneme

PMID:21873635[4]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:1913996
PANTHER:PTN000326085
WB:WBGene00006960

C

Seeded From UniProt

complete

part_of

GO:0005868

cytoplasmic dynein complex

PMID:21873635[4]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000326085
UniProtKB:Q7XA07
UniProtKB:Q8TCX1

C

Seeded From UniProt

complete

part_of

GO:0005868

cytoplasmic dynein complex

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR040045

C

Seeded From UniProt

complete

involved_in

GO:0035721

intraciliary retrograde transport

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR040045

P

Seeded From UniProt

complete

involved_in

GO:0035735

intraciliary transport involved in cilium assembly

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR040045

P

Seeded From UniProt

complete

part_of

GO:0005929

cilium

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0969

C

Seeded From UniProt

complete

part_of

GO:0042995

cell projection

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0966

C

Seeded From UniProt

complete

part_of

GO:0031514

motile cilium

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0282

C

Seeded From UniProt

complete

part_of

GO:0016020

membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0472

C

Seeded From UniProt

complete

enables

GO:0003774

motor activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0243

F

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-1003

C

Seeded From UniProt

complete

involved_in

GO:0007275

multicellular organism development

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0217

P

Seeded From UniProt

complete

part_of

GO:0005874

microtubule

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0493

C

Seeded From UniProt

complete

part_of

GO:0005856

cytoskeleton

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0206

C

Seeded From UniProt

complete

involved_in

GO:0030030

cell projection organization

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0970

P

Seeded From UniProt

complete

part_of

GO:0030286

dynein complex

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0243

C

Seeded From UniProt

complete

edit table

Notes

References

See Help:References for how to manage references in GONUTS.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Pedersen, LB et al. (2006) Dissecting the molecular mechanisms of intraflagellar transport in chlamydomonas. Curr. Biol. 16 450-9 PubMed GONUTS page
  2. ↑ 2.0 2.1 2.2 Perrone, CA et al. (2003) A novel dynein light intermediate chain colocalizes with the retrograde motor for intraflagellar transport at sites of axoneme assembly in chlamydomonas and Mammalian cells. Mol. Biol. Cell 14 2041-56 PubMed GONUTS page
  3. ↑ 3.0 3.1 Rompolas, P et al. (2007) Chlamydomonas FAP133 is a dynein intermediate chain associated with the retrograde intraflagellar transport motor. J. Cell. Sci. 120 3653-65 PubMed GONUTS page
  4. ↑ 4.0 4.1 4.2 4.3 4.4 4.5 4.6 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
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