CHICK:RUXE

Species (Taxon ID)	Gallus gallus (Chicken). (9031)
Gene Name(s)	SNRPE
Protein Name(s)	Small nuclear ribonucleoprotein E snRNP-E Sm protein E Sm-E SmE
External Links
UniProt	P62303
EMBL	X65702 L19064
RefSeq	NP_990581.1
UniGene	Gga.23395
ProteinModelPortal	P62303
SMR	P62303
MINT	MINT-124835
STRING	9031.ENSGALP00000000189
PaxDb	P62303
PRIDE	P62303
Ensembl	ENSGALT00000000190
GeneID	396180
KEGG	gga:396180
CTD	6635
eggNOG	COG1958
GeneTree	ENSGT00390000012818
HOVERGEN	HBG003229
InParanoid	P62303
KO	K11097
OMA	FDEFMNI
OrthoDB	EOG7GFB5W
PhylomeDB	P62303
TreeFam	TF314419
Reactome	REACT_226599 REACT_236883 REACT_242586 REACT_244076 REACT_260403
NextBio	20816234
PRO	PR:P62303
Proteomes	UP000000539
GO	GO:0071013 GO:0005829 GO:0070062 GO:0034709 GO:0034715 GO:0034719 GO:0005685 GO:0005689 GO:0005687 GO:0005683 GO:0003723 GO:0000387
InterPro	IPR010920 IPR001163 IPR006649 IPR027078
PANTHER	PTHR11193
Pfam	PF01423
SMART	SM00651
SUPFAM	SSF50182

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Notes	Status
part_of	GO:0071007	U2-type catalytic step 2 spliceosome	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P62304	C	Seeded From UniProt	complete
part_of	GO:0071005	U2-type precatalytic spliceosome	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P62304	C	Seeded From UniProt	complete
part_of	GO:0046540	U4/U6 x U5 tri-snRNP complex	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P62304	C	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P62304	C	Seeded From UniProt	complete
involved_in	GO:0000398	mRNA splicing, via spliceosome	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P62304	P	Seeded From UniProt	complete
part_of	GO:0034719	SMN-Sm protein complex	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P62304	C	Seeded From UniProt	complete
part_of	GO:0034715	pICln-Sm protein complex	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P62304	C	Seeded From UniProt	complete
part_of	GO:0034709	methylosome	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P62304	C	Seeded From UniProt	complete
part_of	GO:0005829	cytosol	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P62304	C	Seeded From UniProt	complete
part_of	GO:0005687	U4 snRNP	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P62304	C	Seeded From UniProt	complete
part_of	GO:0005685	U1 snRNP	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P62304	C	Seeded From UniProt	complete
involved_in	GO:0000387	spliceosomal snRNP assembly	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P62304	P	Seeded From UniProt	complete
part_of	GO:0046540	U4/U6 x U5 tri-snRNP complex	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000127555 SGD:S000005685	C	Seeded From UniProt	complete
part_of	GO:0005687	U4 snRNP	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000127555 UniProtKB:P62304	C	Seeded From UniProt	complete
part_of	GO:0005686	U2 snRNP	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000127555 PomBase:SPBC11G11.06c	C	Seeded From UniProt	complete
part_of	GO:0005685	U1 snRNP	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000127555 PomBase:SPBC11G11.06c RGD:2319339 SGD:S000005685 UniProtKB:P62304	C	Seeded From UniProt	complete
part_of	GO:0005682	U5 snRNP	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000127555 SGD:S000005685	C	Seeded From UniProt	complete
involved_in	GO:0000387	spliceosomal snRNP assembly	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000127555 UniProtKB:P62304	P	Seeded From UniProt	complete
part_of	GO:0071013	catalytic step 2 spliceosome	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62304 ensembl:ENSP00000400591	C	Seeded From UniProt	complete
part_of	GO:0071007	U2-type catalytic step 2 spliceosome	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62304 ensembl:ENSP00000400591	C	Seeded From UniProt	complete
part_of	GO:0071005	U2-type precatalytic spliceosome	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62304 ensembl:ENSP00000400591	C	Seeded From UniProt	complete
part_of	GO:0046540	U4/U6 x U5 tri-snRNP complex	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62304 ensembl:ENSP00000400591	C	Seeded From UniProt	complete
part_of	GO:0034719	SMN-Sm protein complex	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62304 ensembl:ENSP00000400591	C	Seeded From UniProt	complete
part_of	GO:0034715	pICln-Sm protein complex	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62304 ensembl:ENSP00000400591	C	Seeded From UniProt	complete
part_of	GO:0034709	methylosome	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62304 ensembl:ENSP00000400591	C	Seeded From UniProt	complete
part_of	GO:0005829	cytosol	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62304 ensembl:ENSP00000400591	C	Seeded From UniProt	complete
part_of	GO:0005697	telomerase holoenzyme complex	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62304 ensembl:ENSP00000400591	C	Seeded From UniProt	complete
part_of	GO:0005689	U12-type spliceosomal complex	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62304 ensembl:ENSP00000400591	C	Seeded From UniProt	complete
part_of	GO:0005687	U4 snRNP	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62304 ensembl:ENSP00000400591	C	Seeded From UniProt	complete
part_of	GO:0005685	U1 snRNP	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62304 ensembl:ENSP00000400591	C	Seeded From UniProt	complete
part_of	GO:0005683	U7 snRNP	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62304 ensembl:ENSP00000400591	C	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62304 ensembl:ENSP00000400591	C	Seeded From UniProt	complete
involved_in	GO:0000398	mRNA splicing, via spliceosome	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62304 ensembl:ENSP00000400591	P	Seeded From UniProt	complete
involved_in	GO:0000387	spliceosomal snRNP assembly	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62304 ensembl:ENSP00000400591	P	Seeded From UniProt	complete
involved_in	GO:0000398	mRNA splicing, via spliceosome	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR027078	P	Seeded From UniProt	complete
part_of	GO:0005681	spliceosomal complex	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR027078	C	Seeded From UniProt	complete
involved_in	GO:0008380	RNA splicing	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0508	P	Seeded From UniProt	complete
enables	GO:0003723	RNA binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0694	F	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000037 GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0539 UniProtKB-SubCell:SL-0191	C	Seeded From UniProt	complete
involved_in	GO:0006397	mRNA processing	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0507	P	Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0963	C	Seeded From UniProt	complete
part_of	GO:0005681	spliceosomal complex	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0747	C	Seeded From UniProt	complete
part_of	GO:0005829	cytosol	GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-SubCell:SL-0091	C	Seeded From UniProt	complete
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Notes

References

See Help:References for how to manage references in GONUTS.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

[PMID:21873635-1] 1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

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CHICK:RUXE

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