CHICK:RSMB

Species (Taxon ID)	Gallus gallus (Chicken). (9031)
Gene Name(s)	SNRPB
Protein Name(s)	Small nuclear ribonucleoprotein-associated protein B' snRNP-B' snRPB' Sm protein B' Sm-B' SmB'
External Links
UniProt	Q9PV94
EMBL	AF134830
RefSeq	NP_989930.1
UniGene	Gga.3086
ProteinModelPortal	Q9PV94
SMR	Q9PV94
PaxDb	Q9PV94
PRIDE	Q9PV94
GeneID	395298
KEGG	gga:395298
CTD	6628
eggNOG	COG1958
HOGENOM	HOG000188899
HOVERGEN	HBG001019
InParanoid	Q9PV94
KO	K11086
OrthoDB	EOG7J70HT
PhylomeDB	Q9PV94
TreeFam	TF314232
NextBio	20815383
Proteomes	UP000000539
GO	GO:0005829 GO:0034709 GO:0034719 GO:0005681 GO:0005685 GO:0005687 GO:0003723 GO:0000387
InterPro	IPR010920 IPR001163 IPR006649 IPR017131
Pfam	PF01423
PIRSF	PIRSF037187
SMART	SM00651
SUPFAM	SSF50182

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Notes	Status
part_of	GO:0071007	U2-type catalytic step 2 spliceosome	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P14678	C	Seeded From UniProt	complete
part_of	GO:0071005	U2-type precatalytic spliceosome	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P14678	C	Seeded From UniProt	complete
part_of	GO:0046540	U4/U6 x U5 tri-snRNP complex	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P14678	C	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P14678	C	Seeded From UniProt	complete
involved_in	GO:0000398	mRNA splicing, via spliceosome	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P14678	P	Seeded From UniProt	complete
part_of	GO:0034719	SMN-Sm protein complex	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P14678	C	Seeded From UniProt	complete
part_of	GO:0034709	methylosome	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P14678	C	Seeded From UniProt	complete
part_of	GO:0005829	cytosol	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P14678	C	Seeded From UniProt	complete
part_of	GO:0005687	U4 snRNP	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P14678	C	Seeded From UniProt	complete
part_of	GO:0005685	U1 snRNP	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P14678	C	Seeded From UniProt	complete
involved_in	GO:0000387	spliceosomal snRNP assembly	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P14678	P	Seeded From UniProt	complete
part_of	GO:0071013	catalytic step 2 spliceosome	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000075760 UniProtKB:P14678	C	Seeded From UniProt	complete
part_of	GO:0071004	U2-type prespliceosome	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000075760 SGD:S000000831	C	Seeded From UniProt	complete
part_of	GO:0046540	U4/U6 x U5 tri-snRNP complex	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000075760 SGD:S000000831	C	Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	MGI:MGI:98342 PANTHER:PTN000075760	C	Seeded From UniProt	complete
part_of	GO:0005687	U4 snRNP	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000075760 UniProtKB:P14678	C	Seeded From UniProt	complete
part_of	GO:0005686	U2 snRNP	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000075760 PomBase:SPAC26A3.08 RGD:621301 RGD:621306	C	Seeded From UniProt	complete
part_of	GO:0005685	U1 snRNP	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000075760 PomBase:SPAC26A3.08 RGD:621301 RGD:621306 SGD:S000000831 UniProtKB:P14678	C	Seeded From UniProt	complete
part_of	GO:0005682	U5 snRNP	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000075760 SGD:S000000831	C	Seeded From UniProt	complete
involved_in	GO:0000398	mRNA splicing, via spliceosome	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000075760 UniProtKB:P14678	P	Seeded From UniProt	complete
part_of	GO:0071013	catalytic step 2 spliceosome	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P14678 ensembl:ENSP00000412566	C	Seeded From UniProt	complete
part_of	GO:0071007	U2-type catalytic step 2 spliceosome	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P14678 ensembl:ENSP00000412566	C	Seeded From UniProt	complete
part_of	GO:0071005	U2-type precatalytic spliceosome	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P14678 ensembl:ENSP00000412566	C	Seeded From UniProt	complete
enables	GO:0070034	telomerase RNA binding	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P14678 ensembl:ENSP00000412566	F	Seeded From UniProt	complete
part_of	GO:0046540	U4/U6 x U5 tri-snRNP complex	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P14678 ensembl:ENSP00000412566	C	Seeded From UniProt	complete
part_of	GO:0034719	SMN-Sm protein complex	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P14678 ensembl:ENSP00000412566	C	Seeded From UniProt	complete
part_of	GO:0034709	methylosome	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P14678 ensembl:ENSP00000412566	C	Seeded From UniProt	complete
involved_in	GO:0006479	protein methylation	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P14678 ensembl:ENSP00000412566	P	Seeded From UniProt	complete
part_of	GO:0005829	cytosol	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P14678 ensembl:ENSP00000412566	C	Seeded From UniProt	complete
part_of	GO:0005697	telomerase holoenzyme complex	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P14678 ensembl:ENSP00000412566	C	Seeded From UniProt	complete
part_of	GO:0005689	U12-type spliceosomal complex	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P14678 ensembl:ENSP00000412566	C	Seeded From UniProt	complete
part_of	GO:0005687	U4 snRNP	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P14678 ensembl:ENSP00000412566	C	Seeded From UniProt	complete
part_of	GO:0005685	U1 snRNP	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P14678 ensembl:ENSP00000412566	C	Seeded From UniProt	complete
part_of	GO:0005683	U7 snRNP	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P14678 ensembl:ENSP00000412566	C	Seeded From UniProt	complete
part_of	GO:0005654	nucleoplasm	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P14678 ensembl:ENSP00000412566	C	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P14678 ensembl:ENSP00000412566	C	Seeded From UniProt	complete
enables	GO:0003723	RNA binding	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P14678 ensembl:ENSP00000412566	F	Seeded From UniProt	complete
involved_in	GO:0000398	mRNA splicing, via spliceosome	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P14678 ensembl:ENSP00000412566	P	Seeded From UniProt	complete
involved_in	GO:0000387	spliceosomal snRNP assembly	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P14678 ensembl:ENSP00000412566	P	Seeded From UniProt	complete
enables	GO:0071208	histone pre-mRNA DCP binding	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P27048 ensembl:ENSMUSP00000099488	F	Seeded From UniProt	complete
part_of	GO:0071204	histone pre-mRNA 3'end processing complex	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P27048 ensembl:ENSMUSP00000099488	C	Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P27048 ensembl:ENSMUSP00000099488	C	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P27048 ensembl:ENSMUSP00000099488	C	Seeded From UniProt	complete
enables	GO:0003723	RNA binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0694	F	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000037 GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0539 UniProtKB-SubCell:SL-0191	C	Seeded From UniProt	complete
involved_in	GO:0006397	mRNA processing	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0507	P	Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0963	C	Seeded From UniProt	complete
involved_in	GO:0008380	RNA splicing	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0508	P	Seeded From UniProt	complete
part_of	GO:0005681	spliceosomal complex	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0747	C	Seeded From UniProt	complete
part_of	GO:0005829	cytosol	GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-SubCell:SL-0091	C	Seeded From UniProt	complete
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Notes

References

See Help:References for how to manage references in GONUTS.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 ^1.8 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

[PMID:21873635-1] 1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 ^1.8 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

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CHICK:RSMB

Contents

Annotations

Notes

References

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