GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

CHICK:RB

From GONUTS
Jump to: navigation, search
Species (Taxon ID) Gallus gallus (Chicken). (9031)
Gene Name(s) RB1
Protein Name(s) Retinoblastoma-associated protein

p104 pRb Rb

External Links
UniProt Q90600
EMBL X72218
U00113
X72217
PIR S45298
RefSeq NP_989750.1
UniGene Gga.2986
ProteinModelPortal Q90600
SMR Q90600
STRING 9031.ENSGALP00000035706
PaxDb Q90600
PRIDE Q90600
GeneID 386582
KEGG gga:386582
CTD 5925
eggNOG NOG296920
HOGENOM HOG000136539
HOVERGEN HBG008967
InParanoid Q90600
KO K06618
PhylomeDB Q90600
NextBio 20813945
PRO PR:Q90600
Proteomes UP000000539
GO GO:0005634
GO:0003677
GO:0007049
GO:0016568
GO:0051726
GO:0006357
GO:0006351
GO:0016032
Gene3D 1.10.472.10
InterPro IPR013763
IPR002720
IPR002719
IPR015030
IPR028309
IPR024599
PANTHER PTHR13742
Pfam PF11934
PF01858
PF01857
PF08934
SMART SM00385
SUPFAM SSF47954

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

involved_in

GO:2000134

negative regulation of G1/S transition of mitotic cell cycle

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0015799
FB:FBgn0038390
MGI:MGI:97874
PANTHER:PTN000348425

P

Seeded From UniProt

complete

involved_in

GO:0048667

cell morphogenesis involved in neuron differentiation

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:97874
PANTHER:PTN000348429

P

Seeded From UniProt

complete

part_of

GO:0035189

Rb-E2F complex

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:97874
PANTHER:PTN000348429
UniProtKB:P06400

C

Seeded From UniProt

complete

involved_in

GO:0031175

neuron projection development

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:97874
PANTHER:PTN000348429

P

Seeded From UniProt

complete

involved_in

GO:0030182

neuron differentiation

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:97874
PANTHER:PTN000348429

P

Seeded From UniProt

complete

involved_in

GO:0030154

cell differentiation

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000348425
UniProtKB:Q9LKZ3

P

Seeded From UniProt

complete

involved_in

GO:0007346

regulation of mitotic cell cycle

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000348425
UniProtKB:P06400

P

Seeded From UniProt

complete

part_of

GO:0005667

transcription factor complex

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:103300
MGI:MGI:105085
MGI:MGI:97874
PANTHER:PTN000348425

C

Seeded From UniProt

complete

colocalizes_with

GO:0005634

nucleus

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0015799
MGI:MGI:103300
MGI:MGI:105085
MGI:MGI:97874
PANTHER:PTN000348425
RGD:3540
UniProtKB:P06400
UniProtKB:Q08999
UniProtKB:Q9LKZ3
WB:WBGene00003020

C

Seeded From UniProt

complete

enables

GO:0001102

RNA polymerase II activating transcription factor binding

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:97874
PANTHER:PTN000348425

F

Seeded From UniProt

complete

enables

GO:0001012

RNA polymerase II regulatory region DNA binding

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0015799
PANTHER:PTN000348425

F

Seeded From UniProt

complete

part_of

GO:0000785

chromatin

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0015799
PANTHER:PTN000348425
RGD:3541

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR002719
InterPro:IPR002720

C

Seeded From UniProt

complete

involved_in

GO:0006357

regulation of transcription by RNA polymerase II

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR028309

P

Seeded From UniProt

complete

involved_in

GO:0006915

apoptotic process

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR033057

P

Seeded From UniProt

complete

enables

GO:0008134

transcription factor binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR033057

F

Seeded From UniProt

complete

involved_in

GO:0008285

negative regulation of cell population proliferation

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR033057

P

Seeded From UniProt

complete

part_of

GO:0035189

Rb-E2F complex

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR033057

C

Seeded From UniProt

complete

involved_in

GO:0045892

negative regulation of transcription, DNA-templated

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR033057

P

Seeded From UniProt

complete

involved_in

GO:0051726

regulation of cell cycle

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR002719
InterPro:IPR002720
InterPro:IPR028309

P

Seeded From UniProt

complete

involved_in

GO:2000134

negative regulation of G1/S transition of mitotic cell cycle

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR033057

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

involved_in

GO:0016032

viral process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0945

P

Seeded From UniProt

complete

involved_in

GO:0007049

cell cycle

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0131

P

Seeded From UniProt

complete

involved_in

GO:0006325

chromatin organization

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0156

P

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0238

F

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page