CHICK:Q5ZL58

Species (Taxon ID)	Gallus gallus (Chicken). (9031)
Gene Name(s)	SNRPD3 (ECO:0000313 with Ensembl:ENSGALP00000010633)
Protein Name(s)	Uncharacterized protein (ECO:0000313 with EMBL:CAG31535.1, ECO:0000313 with Ensembl:ENSGALP00000010633)
External Links
UniProt	Q5ZL58
EMBL	AADN03007053 AJ719876
RefSeq	NP_001007839.1
UniGene	Gga.8376
SMR	Q5ZL58
STRING	9031.ENSGALP00000010633
Ensembl	ENSGALT00000010647
GeneID	416947
KEGG	gga:416947
CTD	6634
eggNOG	COG1958
GeneTree	ENSGT00610000086153
HOGENOM	HOG000182712
HOVERGEN	HBG105305
KO	K11088
OMA	IMRANAR
OrthoDB	EOG7VTDQF
PhylomeDB	Q5ZL58
TreeFam	TF354302
Reactome	REACT_226599 REACT_236883 REACT_242586 REACT_244076 REACT_260403
NextBio	20820335
PRO	PR:Q5ZL58
Proteomes	UP000000539
GO	GO:0071013 GO:0005829 GO:0070062 GO:0034709 GO:0034715 GO:0034719 GO:0005685 GO:0005689 GO:0005687 GO:0005683 GO:0071208 GO:0044822 GO:0000387
InterPro	IPR027141 IPR010920 IPR001163 IPR006649
PANTHER	PTHR23338
Pfam	PF01423
SMART	SM00651
SUPFAM	SSF50182

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Notes	Status
part_of	GO:0071013	catalytic step 2 spliceosome	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000596880 UniProtKB:P62318	C	Seeded From UniProt	complete
part_of	GO:0034719	SMN-Sm protein complex	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000596880 UniProtKB:P62318	C	Seeded From UniProt	complete
part_of	GO:0034715	pICln-Sm protein complex	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000596880 UniProtKB:P62318	C	Seeded From UniProt	complete
part_of	GO:0005689	U12-type spliceosomal complex	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000596880 UniProtKB:P62318	C	Seeded From UniProt	complete
part_of	GO:0005687	U4 snRNP	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000596880 UniProtKB:P62318	C	Seeded From UniProt	complete
part_of	GO:0005686	U2 snRNP	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000596880 PomBase:SPBC19C2.14	C	Seeded From UniProt	complete
part_of	GO:0005685	U1 snRNP	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000596880 PomBase:SPBC19C2.14 RGD:1597573 SGD:S000004137 UniProtKB:P62318	C	Seeded From UniProt	complete
part_of	GO:0005682	U5 snRNP	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000596880 SGD:S000004137	C	Seeded From UniProt	complete
enables	GO:0003723	RNA binding	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000596745 UniProtKB:P62318	F	Seeded From UniProt	complete
involved_in	GO:0000387	spliceosomal snRNP assembly	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000596745 UniProtKB:P62314 UniProtKB:P62318	P	Seeded From UniProt	complete
part_of	GO:0000243	commitment complex	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000596880 SGD:S000004137	C	Seeded From UniProt	complete
enables	GO:0071208	histone pre-mRNA DCP binding	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62320 ensembl:ENSMUSP00000020397	F	Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62320 ensembl:ENSMUSP00000020397	C	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62320 ensembl:ENSMUSP00000020397	C	Seeded From UniProt	complete
enables	GO:0071209	U7 snRNA binding	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62318 ensembl:ENSP00000215829	F	Seeded From UniProt	complete
part_of	GO:0071013	catalytic step 2 spliceosome	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62318 ensembl:ENSP00000215829	C	Seeded From UniProt	complete
part_of	GO:0071007	U2-type catalytic step 2 spliceosome	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62318 ensembl:ENSP00000215829	C	Seeded From UniProt	complete
part_of	GO:0071005	U2-type precatalytic spliceosome	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62318 ensembl:ENSP00000215829	C	Seeded From UniProt	complete
enables	GO:0070034	telomerase RNA binding	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62318 ensembl:ENSP00000215829	F	Seeded From UniProt	complete
part_of	GO:0046540	U4/U6 x U5 tri-snRNP complex	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62318 ensembl:ENSP00000215829	C	Seeded From UniProt	complete
part_of	GO:0034719	SMN-Sm protein complex	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62318 ensembl:ENSP00000215829	C	Seeded From UniProt	complete
part_of	GO:0034715	pICln-Sm protein complex	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62318 ensembl:ENSP00000215829	C	Seeded From UniProt	complete
part_of	GO:0034709	methylosome	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62318 ensembl:ENSP00000215829	C	Seeded From UniProt	complete
enables	GO:0019899	enzyme binding	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62318 ensembl:ENSP00000215829	F	Seeded From UniProt	complete
part_of	GO:0016604	nuclear body	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62318 ensembl:ENSP00000215829	C	Seeded From UniProt	complete
involved_in	GO:0006479	protein methylation	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62318 ensembl:ENSP00000215829	P	Seeded From UniProt	complete
part_of	GO:0005829	cytosol	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62318 ensembl:ENSP00000215829	C	Seeded From UniProt	complete
part_of	GO:0005697	telomerase holoenzyme complex	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62318 ensembl:ENSP00000215829	C	Seeded From UniProt	complete
part_of	GO:0005689	U12-type spliceosomal complex	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62318 ensembl:ENSP00000215829	C	Seeded From UniProt	complete
part_of	GO:0005687	U4 snRNP	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62318 ensembl:ENSP00000215829	C	Seeded From UniProt	complete
part_of	GO:0005685	U1 snRNP	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62318 ensembl:ENSP00000215829	C	Seeded From UniProt	complete
part_of	GO:0005683	U7 snRNP	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62318 ensembl:ENSP00000215829	C	Seeded From UniProt	complete
part_of	GO:0005654	nucleoplasm	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62318 ensembl:ENSP00000215829	C	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62318 ensembl:ENSP00000215829	C	Seeded From UniProt	complete
enables	GO:0003723	RNA binding	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62318 ensembl:ENSP00000215829	F	Seeded From UniProt	complete
involved_in	GO:0000398	mRNA splicing, via spliceosome	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62318 ensembl:ENSP00000215829	P	Seeded From UniProt	complete
involved_in	GO:0000387	spliceosomal snRNP assembly	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:P62318 ensembl:ENSP00000215829	P	Seeded From UniProt	complete
involved_in	GO:0000387	spliceosomal snRNP assembly	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR034099	P	Seeded From UniProt	complete
part_of	GO:0005681	spliceosomal complex	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR034099	C	Seeded From UniProt	complete
involved_in	GO:0006396	RNA processing	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR027141	P	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000038	ECO:0000323	imported automatically asserted information used in automatic assertion	UniProtKB-KW:KW-0539	C	Seeded From UniProt	complete
involved_in	GO:0008380	RNA splicing	GO_REF:0000038	ECO:0000323	imported automatically asserted information used in automatic assertion	UniProtKB-KW:KW-0508	P	Seeded From UniProt	complete
involved_in	GO:0006397	mRNA processing	GO_REF:0000038	ECO:0000323	imported automatically asserted information used in automatic assertion	UniProtKB-KW:KW-0507	P	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000040	ECO:0000323	imported automatically asserted information used in automatic assertion	UniProtKB-SubCell:SL-0191	C	Seeded From UniProt	complete
part_of	GO:0034719	SMN-Sm protein complex	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000931779	C	Seeded From UniProt	complete
part_of	GO:0005687	U4 snRNP	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000931779	C	Seeded From UniProt	complete
involved_in	GO:0000387	spliceosomal snRNP assembly	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000931779	P	Seeded From UniProt	complete
part_of	GO:0034715	pICln-Sm protein complex	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000931779	C	Seeded From UniProt	complete
part_of	GO:0005685	U1 snRNP	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000931779	C	Seeded From UniProt	complete
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Notes

References

See Help:References for how to manage references in GONUTS.

↑ ^1.00 ^1.01 ^1.02 ^1.03 ^1.04 ^1.05 ^1.06 ^1.07 ^1.08 ^1.09 ^1.10 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

[PMID:21873635-1] 1.00 ^1.01 ^1.02 ^1.03 ^1.04 ^1.05 ^1.06 ^1.07 ^1.08 ^1.09 ^1.10 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

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CHICK:Q5ZL58

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Annotations

Notes

References

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