CHICK:NCBP1

Species (Taxon ID)	Gallus gallus (Chicken). (9031)
Gene Name(s)	NCBP1 (synonyms: CBP80)
Protein Name(s)	Nuclear cap-binding protein subunit 1 80 kDa nuclear cap-binding protein CBP80 NCBP 80 kDa subunit
External Links
UniProt	Q5ZJZ6
EMBL	AJ720288
RefSeq	NP_001026611.1
UniGene	Gga.2984
ProteinModelPortal	Q5ZJZ6
SMR	Q5ZJZ6
STRING	9031.ENSGALP00000003250
PaxDb	Q5ZJZ6
Ensembl	ENSGALT00000003255
GeneID	427379
KEGG	gga:427379
CTD	4686
eggNOG	NOG303489
GeneTree	ENSGT00390000001733
HOGENOM	HOG000007990
HOVERGEN	HBG080328
InParanoid	Q5ZJZ6
KO	K12882
OMA	IMLLTEH
PhylomeDB	Q5ZJZ6
Reactome	REACT_197241 REACT_197242 REACT_226599 REACT_236883 REACT_242586 REACT_244076 REACT_245185 REACT_253894 REACT_260403 REACT_260474 REACT_261724 REACT_262197
NextBio	20828646
PRO	PR:Q5ZJZ6
Proteomes	UP000000539
GO	GO:0005739 GO:0005845 GO:0005846 GO:0005634 GO:0005886 GO:0030529 GO:0044822 GO:0000339 GO:0006370 GO:0031047 GO:0045292 GO:0006379 GO:0006406 GO:0000184 GO:0031442 GO:0006446
Gene3D	1.25.40.180
InterPro	IPR016024 IPR027159 IPR016021 IPR015172 IPR015174 IPR003890
PANTHER	PTHR12412
Pfam	PF02854 PF09088 PF09090
SMART	SM00543
SUPFAM	SSF48371

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Notes	Status
involved_in	GO:0006446	regulation of translational initiation	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:Q09161	P	Seeded From UniProt	complete
involved_in	GO:0006406	mRNA export from nucleus	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:Q09161	P	Seeded From UniProt	complete
involved_in	GO:0006370	7-methylguanosine mRNA capping	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:Q09161	P	Seeded From UniProt	complete
part_of	GO:0005845	mRNA cap binding complex	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:Q09161	C	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:Q09161	C	Seeded From UniProt	complete
involved_in	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:Q09161	P	Seeded From UniProt	complete
part_of	GO:1990904	ribonucleoprotein complex	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000275634 UniProtKB:Q09161	C	Seeded From UniProt	complete
involved_in	GO:0031053	primary miRNA processing	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	FB:FBgn0022942 PANTHER:PTN000275634 TAIR:locus:2054137	P	Seeded From UniProt	complete
involved_in	GO:0006406	mRNA export from nucleus	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000275634 UniProtKB:Q09161	P	Seeded From UniProt	complete
part_of	GO:0005846	nuclear cap binding complex	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000275634 RGD:1308973 SGD:S000004732	C	Seeded From UniProt	complete
part_of	GO:0005845	mRNA cap binding complex	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000275634 UniProtKB:Q09161	C	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000275634 RGD:1308973 TAIR:locus:2054137 UniProtKB:Q09161	C	Seeded From UniProt	complete
enables	GO:0000339	RNA cap binding	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000275634 TAIR:locus:2054137	F	Seeded From UniProt	complete
involved_in	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	PMID:21873635^[1]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000275634 SGD:S000004732 UniProtKB:Q09161	P	Seeded From UniProt	complete
part_of	GO:1990904	ribonucleoprotein complex	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q09161 ensembl:ENSP00000364289	C	Seeded From UniProt	complete
involved_in	GO:1905216	positive regulation of RNA binding	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q09161 ensembl:ENSP00000364289	P	Seeded From UniProt	complete
involved_in	GO:0098789	pre-mRNA cleavage required for polyadenylation	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q09161 ensembl:ENSP00000364289	P	Seeded From UniProt	complete
involved_in	GO:0048026	positive regulation of mRNA splicing, via spliceosome	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q09161 ensembl:ENSP00000364289	P	Seeded From UniProt	complete
part_of	GO:0034518	RNA cap binding complex	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q09161 ensembl:ENSP00000364289	C	Seeded From UniProt	complete
involved_in	GO:0031442	positive regulation of mRNA 3'-end processing	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q09161 ensembl:ENSP00000364289	P	Seeded From UniProt	complete
involved_in	GO:0030307	positive regulation of cell growth	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q09161 ensembl:ENSP00000364289	P	Seeded From UniProt	complete
involved_in	GO:0006446	regulation of translational initiation	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q09161 ensembl:ENSP00000364289	P	Seeded From UniProt	complete
involved_in	GO:0006406	mRNA export from nucleus	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q09161 ensembl:ENSP00000364289	P	Seeded From UniProt	complete
involved_in	GO:0006370	7-methylguanosine mRNA capping	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q09161 ensembl:ENSP00000364289	P	Seeded From UniProt	complete
part_of	GO:0005845	mRNA cap binding complex	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q09161 ensembl:ENSP00000364289	C	Seeded From UniProt	complete
part_of	GO:0005829	cytosol	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q09161 ensembl:ENSP00000364289	C	Seeded From UniProt	complete
part_of	GO:0005739	mitochondrion	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q09161 ensembl:ENSP00000364289	C	Seeded From UniProt	complete
part_of	GO:0005654	nucleoplasm	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q09161 ensembl:ENSP00000364289	C	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q09161 ensembl:ENSP00000364289	C	Seeded From UniProt	complete
enables	GO:0000340	RNA 7-methylguanosine cap binding	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q09161 ensembl:ENSP00000364289	F	Seeded From UniProt	complete
involved_in	GO:0000245	spliceosomal complex assembly	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q09161 ensembl:ENSP00000364289	P	Seeded From UniProt	complete
involved_in	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:Q09161 ensembl:ENSP00000364289	P	Seeded From UniProt	complete
part_of	GO:0005829	cytosol	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:A0A024R179 ensembl:ENSP00000364289	C	Seeded From UniProt	complete
part_of	GO:0005739	mitochondrion	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:A0A024R179 ensembl:ENSP00000364289	C	Seeded From UniProt	complete
part_of	GO:0005654	nucleoplasm	GO_REF:0000107	ECO:0000265	sequence orthology evidence used in automatic assertion	UniProtKB:A0A024R179 ensembl:ENSP00000364289	C	Seeded From UniProt	complete
enables	GO:0000339	RNA cap binding	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR027159	F	Seeded From UniProt	complete
enables	GO:0003723	RNA binding	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR003890	F	Seeded From UniProt	complete
part_of	GO:0005846	nuclear cap binding complex	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR027159	C	Seeded From UniProt	complete
involved_in	GO:0016070	RNA metabolic process	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR015172 InterPro:IPR015174	P	Seeded From UniProt	complete
involved_in	GO:0045292	mRNA cis splicing, via spliceosome	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR027159	P	Seeded From UniProt	complete
involved_in	GO:0051028	mRNA transport	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR027159	P	Seeded From UniProt	complete
involved_in	GO:0006370	7-methylguanosine mRNA capping	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0506	P	Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm	GO_REF:0000037 GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0963 UniProtKB-SubCell:SL-0086	C	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000037 GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0539 UniProtKB-SubCell:SL-0191	C	Seeded From UniProt	complete
involved_in	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0866	P	Seeded From UniProt	complete
involved_in	GO:0031047	gene silencing by RNA	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0943	P	Seeded From UniProt	complete
involved_in	GO:0051028	mRNA transport	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0509	P	Seeded From UniProt	complete
involved_in	GO:0006397	mRNA processing	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0507	P	Seeded From UniProt	complete
involved_in	GO:0006417	regulation of translation	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0810	P	Seeded From UniProt	complete
involved_in	GO:0008380	RNA splicing	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0508	P	Seeded From UniProt	complete
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Notes

References

See Help:References for how to manage references in GONUTS.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

[PMID:21873635-1] 1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

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CHICK:NCBP1

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References

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