CHICK:LHX9

Species (Taxon ID)	Gallus gallus (Chicken). (9031)
Gene Name(s)	LHX9 (synonyms: LH-2A)
Protein Name(s)	LIM/homeobox protein Lhx9 LIM homeobox protein 9
External Links
UniProt	Q90881
EMBL	L35566
PIR	JC5658
RefSeq	NP_990757.1
UniGene	Gga.2348
STRING	9031.ENSGALP00000003475
PaxDb	Q90881
GeneID	396397
KEGG	gga:396397
CTD	56956
eggNOG	NOG240987
HOGENOM	HOG000034022
HOVERGEN	HBG006262
InParanoid	Q90881
KO	K09373
PhylomeDB	Q90881
NextBio	20816439
PRO	PR:Q90881
Proteomes	UP000000539
GO	GO:0005634 GO:0043565 GO:0003714 GO:0008270 GO:0008045 GO:0045892 GO:0021522
Gene3D	1.10.10.60 2.10.110.10
InterPro	IPR017970 IPR001356 IPR009057 IPR001781
Pfam	PF00046 PF00412
SMART	SM00389 SM00132
SUPFAM	SSF46689
PROSITE	PS00027 PS50071 PS00478 PS50023

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Notes	Status
involved_in	GO:0045892	negative regulation of transcription, DNA-templated	PMID:19545367^[1]	ECO:0000314	direct assay evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0021522	spinal cord motor neuron differentiation	PMID:19545367^[1]	ECO:0000270	expression pattern evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0097380	dorsal spinal cord interneuron anterior axon guidance	PMID:19545367^[1]	ECO:0000314	direct assay evidence used in manual assertion		P	Seeded From UniProt	complete
enables	GO:0003714	transcription corepressor activity	PMID:19545367^[1]	ECO:0000314	direct assay evidence used in manual assertion		F	Seeded From UniProt	complete
involved_in	GO:0045944	positive regulation of transcription by RNA polymerase II	PMID:21873635^[2]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	FB:FBgn0267978 MGI:MGI:102673 MGI:MGI:1100513 MGI:MGI:1888519 MGI:MGI:96785 PANTHER:PTN000654232 UniProtKB:Q969G2 UniProtKB:Q9UBR4 WB:WBGene00000438 WB:WBGene00002988 WB:WBGene00003167 WB:WBGene00006654	P	Seeded From UniProt	complete
involved_in	GO:0030182	neuron differentiation	PMID:21873635^[2]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	FB:FBgn0002023 FB:FBgn0267978 MGI:MGI:101776 MGI:MGI:102673 MGI:MGI:107792 MGI:MGI:1096343 MGI:MGI:1100513 MGI:MGI:1306803 MGI:MGI:1888519 MGI:MGI:96785 MGI:MGI:99783 PANTHER:PTN000654232 RGD:71076 UniProtKB:P53411 UniProtKB:Q90881 WB:WBGene00000438 WB:WBGene00002988 WB:WBGene00003000 WB:WBGene00003167 WB:WBGene00006654 ZFIN:ZDB-GENE-050114-2 ZFIN:ZDB-GENE-050114-3 ZFIN:ZDB-GENE-050417-210 ZFIN:ZDB-GENE-051220-1 ZFIN:ZDB-GENE-060728-1 ZFIN:ZDB-GENE-980526-131	P	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	PMID:21873635^[2]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	FB:FBgn0267978 MGI:MGI:1096343 MGI:MGI:1100513 MGI:MGI:1306803 MGI:MGI:96785 MGI:MGI:99783 PANTHER:PTN000654232 RGD:71074 UniProtKB:O60663 UniProtKB:O97581 UniProtKB:P53411 UniProtKB:Q9UPM6 WB:WBGene00000438 WB:WBGene00002987 WB:WBGene00002988 WB:WBGene00003167	C	Seeded From UniProt	complete
enables	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	PMID:21873635^[2]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	MGI:MGI:1100513 MGI:MGI:1888519 MGI:MGI:96785 PANTHER:PTN000654232 UniProtKB:Q9UBR4	F	Seeded From UniProt	complete
enables	GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	PMID:21873635^[2]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	FB:FBgn0267978 MGI:MGI:1100513 MGI:MGI:1888519 MGI:MGI:96785 PANTHER:PTN000654232 WB:WBGene00000438 WB:WBGene00002987 WB:WBGene00006654	F	Seeded From UniProt	complete
enables	GO:0003677	DNA binding	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR001356 InterPro:IPR009057	F	Seeded From UniProt	complete
involved_in	GO:0006355	regulation of transcription, DNA-templated	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR017970	P	Seeded From UniProt	complete
enables	GO:0043565	sequence-specific DNA binding	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR017970	F	Seeded From UniProt	complete
enables	GO:0046872	metal ion binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0479	F	Seeded From UniProt	complete
enables	GO:0003677	DNA binding	GO_REF:0000037 GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0238 UniProtKB-KW:KW-0371	F	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000037 GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0539 UniProtKB-SubCell:SL-0191	C	Seeded From UniProt	complete
edit table

Notes

References

See Help:References for how to manage references in GONUTS.

↑ ^1.0 ^1.1 ^1.2 ^1.3 Avraham, O et al. (2009) Transcriptional control of axonal guidance and sorting in dorsal interneurons by the Lim-HD proteins Lhx9 and Lhx1. Neural Dev 4 21 PubMed GONUTS page
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

[PMID:19545367-1] 1.0 ^1.1 ^1.2 ^1.3 Avraham, O et al. (2009) Transcriptional control of axonal guidance and sorting in dorsal interneurons by the Lim-HD proteins Lhx9 and Lhx1. Neural Dev 4 21 PubMed GONUTS page

[PMID:21873635-2] 2.0 ^2.1 ^2.2 ^2.3 ^2.4 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

[1]

[2]

CHICK:LHX9

Contents

Annotations

Notes

References

a

c

d

e

g

m

n

p

r

s

t

v

Navigation menu

Personal tools

Namespaces

Variants

Views

More

Search

Navigation

Cacao

Links

Tools