GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
CHICK:HMGB3
Contents
Species (Taxon ID) | Gallus gallus (Chicken). (9031) | |
Gene Name(s) | HMGB3 (synonyms: HMG2A, HMG4) | |
Protein Name(s) | High mobility group protein B3
High mobility group protein 2a HMG-2a High mobility group protein 4 HMG-4 | |
External Links | ||
UniProt | P40618 | |
EMBL | X63463 AADN03004033 AADN03004127 D14314 | |
PIR | S22359 | |
RefSeq | NP_990626.2 | |
UniGene | Gga.4513 | |
PRIDE | P40618 | |
GeneID | 396232 | |
KEGG | gga:396232 | |
CTD | 3149 | |
HOVERGEN | HBG009000 | |
InParanoid | P40618 | |
KO | K11296 | |
OrthoDB | EOG7WHHBQ | |
TreeFam | TF105371 | |
NextBio | 20816284 | |
PRO | PR:P40618 | |
Proteomes | UP000000539 | |
GO | GO:0005694 GO:0005634 GO:0008301 GO:0000400 GO:0044822 GO:0032392 GO:0045578 GO:0045638 | |
Gene3D | 1.10.30.10 | |
InterPro | IPR009071 IPR017967 IPR031077 | |
PANTHER | PTHR13711:SF144 | |
Pfam | PF00505 PF09011 | |
SMART | SM00398 | |
SUPFAM | SSF47095 | |
PROSITE | PS00353 PS50118 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
enables |
GO:0000400 |
four-way junction DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0008301 |
DNA binding, bending |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032392 |
DNA geometric change |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:96113 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0045089 |
positive regulation of innate immune response |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:96113 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0008301 |
DNA binding, bending |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0004362 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0008134 |
transcription factor binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0278608 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006357 |
regulation of transcription by RNA polymerase II |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0278608 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006338 |
chromatin remodeling |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000345179 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006310 |
DNA recombination |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN001009623 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:96113 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0000790 |
nuclear chromatin |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:96157 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0045638 |
negative regulation of myeloid cell differentiation |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:O54879 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0045578 |
negative regulation of B cell differentiation |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:O54879 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:O54879 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0003723 |
RNA binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:O54879 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0003677 |
DNA binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:O54879 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0002376 |
immune system process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045087 |
innate immune response |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005694 |
chromosome |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 Lee, KB & Thomas, JO (2000) The effect of the acidic tail on the DNA-binding properties of the HMG1,2 class of proteins: insights from tail switching and tail removal. J. Mol. Biol. 304 135-49 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
c
d
m
n
p