GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
CHICK:HDAC3
Contents
| Species (Taxon ID) | Gallus gallus (Chicken). (9031) | |
| Gene Name(s) | HDAC3 | |
| Protein Name(s) | Histone deacetylase 3
HD3 | |
| External Links | ||
| UniProt | P56520 | |
| EMBL | AF039753 | |
| RefSeq | NP_990078.1 | |
| UniGene | Gga.2110 | |
| ProteinModelPortal | P56520 | |
| BioGrid | 675790 | |
| STRING | 9031.ENSGALP00000004141 | |
| PaxDb | P56520 | |
| PRIDE | P56520 | |
| GeneID | 395506 | |
| KEGG | gga:395506 | |
| CTD | 8841 | |
| eggNOG | COG0123 | |
| HOGENOM | HOG000225180 | |
| HOVERGEN | HBG057112 | |
| InParanoid | P56520 | |
| KO | K11404 | |
| PhylomeDB | P56520 | |
| NextBio | 20815585 | |
| PRO | PR:P56520 | |
| Proteomes | UP000000539 | |
| GO | GO:0005737 GO:0000118 GO:0005634 GO:0017053 GO:0003682 GO:0004407 GO:0032041 GO:0070491 GO:0003714 GO:0008134 GO:0016568 GO:0000122 GO:0006351 | |
| Gene3D | 3.40.800.20 | |
| InterPro | IPR000286 IPR003084 IPR023801 | |
| PANTHER | PTHR10625 | |
| Pfam | PF00850 | |
| PIRSF | PIRSF037913 | |
| PRINTS | PR01270 PR01271 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
enables |
GO:0003714 |
transcription corepressor activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
part_of:(UBERON:0001134) |
Seeded From UniProt |
complete | ||
|
enables |
GO:0070491 |
repressing transcription factor binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
part_of:(UBERON:0001134) |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0017053 |
transcriptional repressor complex |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003714 |
transcription corepressor activity |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003682 |
chromatin binding |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0000122 |
negative regulation of transcription by RNA polymerase II |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0070933 |
histone H4 deacetylation |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:108086 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0070932 |
histone H3 deacetylation |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:108086 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN002578320 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0004407 |
histone deacetylase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0015805 |
F |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0000118 |
histone deacetylase complex |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0015805 |
C |
Seeded From UniProt |
complete | ||
|
enables |
GO:0004407 |
histone deacetylase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0016575 |
histone deacetylation |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0004407 |
histone deacetylase activity |
ECO:0000501 |
evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0032041 |
NAD-dependent histone deacetylase activity (H3-K14 specific) |
ECO:0000501 |
evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006325 |
chromatin organization |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0008134 |
transcription factor binding |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0004407 |
histone deacetylase activity |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0000118 |
histone deacetylase complex |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006325 |
chromatin organization |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016787 |
hydrolase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Mathew, S et al. (2009) Repression of the cardiac myosin light chain-2 gene in skeletal muscle requires site-specific association of antithetic regulator, Nished, and HDACs. J. Cell. Mol. Med. 13 1952-61 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 2.4 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 3.3 3.4 3.5 Verdin, E et al. (2003) Class II histone deacetylases: versatile regulators. Trends Genet. 19 286-93 PubMed GONUTS page
c
h
m
n
o
t
