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BRADI:I1HY48
Contents
| Species (Taxon ID) | Brachypodium distachyon (Purple false brome) (Trachynia distachya). (15368) | |
| Gene Name(s) | BRADI3G06480 (ECO:0000313 with EnsemblPlants:BRADI3G06480.1) (synonyms: CAD5 (ECO:0000313 with EMBL:AFK80372.1)) | |
| Protein Name(s) | Cinnamyl alcohol dehydrogenase 5 (ECO:0000313 with EMBL:AFK80372.1)
Uncharacterized protein (ECO:0000313 with EnsemblPlants:BRADI3G06480.1) | |
| External Links | ||
| UniProt | I1HY48 | |
| EMBL | JQ768797 | |
| RefSeq | XP_003570974.1 | |
| EnsemblPlants | BRADI3G06480.1 | |
| GeneID | 100843666 | |
| KEGG | bdi:100843666 | |
| InParanoid | I1HY48 | |
| KO | K00083 | |
| OMA | MEILYCG | |
| Proteomes | UP000008810 | |
| GO | GO:0045551 GO:0052747 GO:0008270 | |
| Gene3D | 3.40.50.720 3.90.180.10 | |
| InterPro | IPR013149 IPR013154 IPR002085 IPR002328 IPR011032 IPR016040 | |
| PANTHER | PTHR11695 | |
| Pfam | PF08240 PF00107 | |
| SUPFAM | SSF50129 | |
| PROSITE | PS00059 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0009809 |
lignin biosynthetic process |
ECO:0000266 |
UniProtKB:O24562 UniProtKB:O49482
|
P |
As seen in figure 3, the BdCAD5 protein sequence clustered with AtCAD5 and ZmCAD2, both bona fide CAD genes involved in lignin biosynthesis. |
complete | ||||
| GO:0045551 |
cinnamyl-alcohol dehydrogenase activity |
ECO:0000314 |
F |
Figure 5 and Table 2 |
complete | |||||
| GO:0009809 |
lignin biosynthetic process |
ECO:0000266 |
|
P |
Figure 3. |
complete | ||||
|
involved_in |
GO:0009809 |
lignin biosynthetic process |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0045551 |
cinnamyl-alcohol dehydrogenase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0009809 |
lignin biosynthetic process |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0045551 |
cinnamyl-alcohol dehydrogenase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000915374 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0016616 |
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG11436 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0009809 |
lignin biosynthetic process |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000915374 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0045551 |
cinnamyl-alcohol dehydrogenase activity |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q6ZHS4 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0009809 |
lignin biosynthetic process |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q6ZHS4 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0008270 |
zinc ion binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016491 |
oxidoreductase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0055114 |
oxidation-reduction process |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0052747 |
sinapyl alcohol dehydrogenase activity |
ECO:0000501 |
evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0045551 |
cinnamyl-alcohol dehydrogenase activity |
ECO:0000501 |
evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016491 |
oxidoreductase activity |
ECO:0000323 |
imported automatically asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0046872 |
metal ion binding |
ECO:0000323 |
imported automatically asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0055114 |
oxidation-reduction process |
ECO:0000323 |
imported automatically asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Bukh, C et al. (2012) Phylogeny and structure of the cinnamyl alcohol dehydrogenase gene family in Brachypodium distachyon. J. Exp. Bot. 63 6223-36 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
