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BPT4:RLIG
Contents
| Species (Taxon ID) | Enterobacteria phage T4 (Bacteriophage T4). (10665) | |
| Gene Name(s) | 63 | |
| Protein Name(s) | T4 RNA ligase 1
Gene product 63 gp63 Rnl1 | |
| External Links | ||
| UniProt | P00971 | |
| EMBL | X00365 X04140 AF158101 M10160 | |
| PIR | A01202 | |
| RefSeq | NP_049839.1 | |
| PDB | 2C5U | |
| PDBsum | 2C5U | |
| ProteinModelPortal | P00971 | |
| SMR | P00971 | |
| GeneID | 1258717 | |
| EvolutionaryTrace | P00971 | |
| Proteomes | UP000009087 | |
| GO | GO:0005524 GO:0046872 GO:0003972 GO:0042245 GO:0098004 | |
| InterPro | IPR012648 IPR019039 | |
| Pfam | PF09511 | |
| TIGRFAMs | TIGR02308 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0003972 |
RNA ligase (ATP) activity |
ECO:0000315 |
F |
Fig 1 |
complete | |||||
| GO:0098004 |
virus tail fiber assembly |
ECO:0000315 |
P |
RNA ligase promotes tail fiber attachment. The product of gene 63 is known to promote attachment of tail fibers to the phage baseplate in the terminal step of T4 phage assembly. See figure 1 |
complete | |||||
| GO:0003910 |
DNA ligase (ATP) activity |
ECO:0000314 |
F |
Figure 2 shows the catalysis results of T4 RNA ligase 1/T4 RNL1 in combination with varying levels of ATP in Enterobacteria phage T4. |
complete | |||||
| GO:0003909 |
DNA ligase activity |
ECO:0000314 |
F |
Figure 2 shows the ligation products of 3'-blocked and 5'- adenylated DNA and T4 RNA ligase 1/T4 RNL1 from Enterobacteria phage T4. |
complete | |||||
|
enables |
GO:0003972 |
RNA ligase (ATP) activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0098004 |
virus tail fiber assembly |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003972 |
RNA ligase (ATP) activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003972 |
RNA ligase (ATP) activity |
ECO:0000501 |
evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0005524 |
ATP binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016874 |
ligase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0046872 |
metal ion binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0016032 |
viral process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0042245 |
RNA repair |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0000166 |
nucleotide binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 1.3 Snopek, TJ et al. (1977) Bacteriophage T4 RNA ligase is gene 63 product, the protein that promotes tail fiber attachment to the baseplate. Proc. Natl. Acad. Sci. U.S.A. 74 3355-9 PubMed GONUTS page
- ↑ Song, Y et al. (2015) Efficient synthesis of stably adenylated DNA and RNA adapters for microRNA capture using T4 RNA ligase 1. Sci Rep 5 15620 PubMed GONUTS page
- ↑ Viollet, S et al. (2011) T4 RNA ligase 2 truncated active site mutants: improved tools for RNA analysis. BMC Biotechnol. 11 72 PubMed GONUTS page
