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ARATH:XPF
Contents
| Species (Taxon ID) | Arabidopsis thaliana (Mouse-ear cress). (3702) | |
| Gene Name(s) | UVH1 (synonyms: RAD1) | |
| Protein Name(s) | DNA repair endonuclease UVH1
DNA excision repair protein XP-F homolog Ultraviolet hypersensitive 1 AtRAD1 | |
| External Links | ||
| UniProt | Q9LKI5 | |
| EMBL | AF089003 AF160500 AF277377 AB010072 CP002688 AY140076 AF191494 | |
| RefSeq | NP_198931.1 | |
| UniGene | At.6598 At.71026 | |
| ProteinModelPortal | Q9LKI5 | |
| SMR | Q9LKI5 | |
| STRING | 3702.AT5G41150.1 | |
| PaxDb | Q9LKI5 | |
| EnsemblPlants | AT5G41150.1 | |
| GeneID | 834117 | |
| Gramene | AT5G41150.1 | |
| KEGG | ath:AT5G41150 | |
| Araport | AT5G41150 | |
| TAIR | locus:2163011 | |
| eggNOG | KOG0442 COG1948 | |
| HOGENOM | HOG000202204 | |
| InParanoid | Q9LKI5 | |
| KO | K10848 | |
| OMA | RNVRVYF | |
| OrthoDB | EOG093601RF | |
| PhylomeDB | Q9LKI5 | |
| Reactome | [www.reactome.org/content/detail/R-ATH-5696395 R-ATH-5696395] [www.reactome.org/content/detail/R-ATH-5696400 R-ATH-5696400] [www.reactome.org/content/detail/R-ATH-6782135 R-ATH-6782135] | |
| PRO | PR:Q9LKI5 | |
| Proteomes | UP000006548 | |
| ExpressionAtlas | Q9LKI5 | |
| Genevisible | Q9LKI5 | |
| GO | GO:0000110 GO:0003684 GO:0003697 GO:0000014 GO:0006281 GO:0000724 GO:0006289 GO:1901255 GO:0006296 GO:0000712 GO:0006979 GO:0009314 | |
| InterPro | IPR006166 IPR011335 IPR010994 | |
| Pfam | PF02732 | |
| SMART | SM00891 | |
| SUPFAM | SSF47781 SSF52980 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0000720 |
pyrimidine dimer repair by nucleotide-excision repair |
ECO:0000315 |
P |
Figure 2D shows the recovery of the repair of (6-4) photoproduct in uvh1 plants transformed with UVH1/AtRAD1. Recovery is seen in both WT and transformed uvh1. Organism: Arabidopsis thaliana |
complete | |||||
| GO:0006289 |
nucleotide-excision repair |
ECO:0000247 |
|
P |
Figure 4 shows sequence alignment to XPF human (and other homologous DNA proteins for nucleotide excision repair) to UVH1. Organism: Arabidopsis thaliana |
complete | ||||
|
involved_in |
GO:0009314 |
response to radiation |
ECO:0000270 |
expression pattern evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006979 |
response to oxidative stress |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006289 |
nucleotide-excision repair |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006281 |
DNA repair |
ECO:0000270 |
expression pattern evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0000724 |
double-strand break repair via homologous recombination |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0000014 |
single-stranded DNA endodeoxyribonuclease activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:1901255 |
nucleotide-excision repair involved in interstrand cross-link repair |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000015911 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006296 |
nucleotide-excision repair, DNA incision, 5'-to lesion |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000015911 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003697 |
single-stranded DNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000015911 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003684 |
damaged DNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000015911 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0000724 |
double-strand break repair via homologous recombination |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000015911 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0000712 |
resolution of meiotic recombination intermediates |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0002707 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0000110 |
nucleotide-excision repair factor 1 complex |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000015911 |
C |
Seeded From UniProt |
complete | ||
|
enables |
GO:0000014 |
single-stranded DNA endodeoxyribonuclease activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000015911 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0004518 |
nuclease activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0004519 |
endonuclease activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0004518 |
nuclease activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006310 |
DNA recombination |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006281 |
DNA repair |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006974 |
cellular response to DNA damage stimulus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016787 |
hydrolase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Liu, Z et al. (2000) Repair of UV damage in plants by nucleotide excision repair: Arabidopsis UVH1 DNA repair gene is a homolog of Saccharomyces cerevisiae Rad1. Plant J. 21 519-28 PubMed GONUTS page
- ↑ Kovalchuk, I et al. (2004) Molecular aspects of plant adaptation to life in the Chernobyl zone. Plant Physiol. 135 357-63 PubMed GONUTS page
- ↑ Li, A et al. (2002) Repair of damaged DNA by Arabidopsis cell extract. Plant Cell 14 263-73 PubMed GONUTS page
- ↑ 4.0 4.1 Fidantsef, AL et al. (2000) The Arabidopsis UVH1 gene is a homolog of the yeast repair endonuclease RAD1. Plant Physiol. 124 579-86 PubMed GONUTS page
- ↑ Filkowski, J et al. (2004) Genome stability of vtc1, tt4, and tt5 Arabidopsis thaliana mutants impaired in protection against oxidative stress. Plant J. 38 60-9 PubMed GONUTS page
- ↑ Dubest, S et al. (2002) Role of the AtRad1p endonuclease in homologous recombination in plants. EMBO Rep. 3 1049-54 PubMed GONUTS page
- ↑ 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.7 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
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