ARATH:TT2

Species (Taxon ID)	Arabidopsis thaliana (Mouse-ear cress). (3702)
Gene Name(s)	TT2 (synonyms: MYB123)
Protein Name(s)	Transcription factor TT2 Myb-related protein 123 AtMYB123 Myb-related transcription factor LBM2-like Protein TRANSPARENT TESTA 2
External Links
UniProt	Q9FJA2
EMBL	AJ299452 AF371981 AY519630 AB015477 CP002688 DQ447000 DQ653318
RefSeq	NP_198405.1
UniGene	At.6888
ProteinModelPortal	Q9FJA2
SMR	Q9FJA2
BioGrid	18773
IntAct	Q9FJA2
PaxDb	Q9FJA2
PRIDE	Q9FJA2
EnsemblPlants	AT5G35550.1
GeneID	833520
KEGG	ath:AT5G35550
GeneFarm	1000
TAIR	AT5G35550
eggNOG	COG5147
HOGENOM	HOG000237600
InParanoid	Q9FJA2
KO	K09422
OMA	RDYITTH
PhylomeDB	Q9FJA2
Proteomes	UP000006548
Genevestigator	Q9FJA2
GO	GO:0005634 GO:0005524 GO:0003682 GO:0003677 GO:0003700 GO:0006633 GO:0009813 GO:0010023 GO:0006970 GO:0006351
Gene3D	1.10.10.60
InterPro	IPR009057 IPR017930 IPR001005
Pfam	PF00249
SMART	SM00717
SUPFAM	SSF46689
PROSITE	PS51294

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Notes	Status
involved_in	GO:0010023	proanthocyanidin biosynthetic process	PMID:11549766^[1]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0006970	response to osmotic stress	PMID:22879396^[2]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0006633	fatty acid biosynthetic process	PMID:22879396^[2]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	PMID:11549766^[1]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
enables	GO:0003700	DNA-binding transcription factor activity	PMID:11549766^[1]	ECO:0000250	sequence similarity evidence used in manual assertion		F	Seeded From UniProt	Missing: with/from
enables	GO:0003700	DNA-binding transcription factor activity	PMID:11118137^[3]	ECO:0000250	sequence similarity evidence used in manual assertion		F	Seeded From UniProt	Missing: with/from
enables	GO:0044212	transcription regulatory region DNA binding	PMID:21873635^[4]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000067606 TAIR:locus:2139144 UniProtKB:Q9ZSI4	F	Seeded From UniProt	complete
enables	GO:0043565	sequence-specific DNA binding	PMID:21873635^[4]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000067606 TAIR:locus:2009452 TAIR:locus:2032860 TAIR:locus:2079182 TAIR:locus:2103459 TAIR:locus:2152830 TAIR:locus:2160339 TAIR:locus:2161820 TAIR:locus:2163233 TAIR:locus:2173562 TAIR:locus:2182275 UniProtKB:Q24JK1 UniProtKB:Q9LXF1	F	Seeded From UniProt	complete
involved_in	GO:0030154	cell differentiation	PMID:21873635^[4]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000067606 TAIR:locus:2174557	P	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	PMID:21873635^[4]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000067606 TAIR:locus:2005503 TAIR:locus:2011786 TAIR:locus:2023951 TAIR:locus:2032860 TAIR:locus:2035015 TAIR:locus:2035287 TAIR:locus:2042526 TAIR:locus:2059883 TAIR:locus:2060241 TAIR:locus:2062040 TAIR:locus:2079182 TAIR:locus:2087690 TAIR:locus:2088187 TAIR:locus:2088957 TAIR:locus:2090764 TAIR:locus:2098906 TAIR:locus:2103386 TAIR:locus:2116447 TAIR:locus:2131844 TAIR:locus:2132584 TAIR:locus:2139144 TAIR:locus:2151938 TAIR:locus:2161820 TAIR:locus:2163233 TAIR:locus:2169538 TAIR:locus:2170553 TAIR:locus:2173562 TAIR:locus:2174195 TAIR:locus:2182275 TAIR:locus:2185470 TAIR:locus:2195528 TAIR:locus:2205283 TAIR:locus:2207330 TAIR:locus:4515102929 TAIR:locus:504955052 UniProtKB:Q24JK1	C	Seeded From UniProt	complete
involved_in	GO:0006355	regulation of transcription, DNA-templated	GO_REF:0000108	ECO:0000364	evidence based on logical inference from manual annotation used in automatic assertion	GO:0003700	P	Seeded From UniProt	complete
involved_in	GO:0006355	regulation of transcription, DNA-templated	GO_REF:0000108	ECO:0000364	evidence based on logical inference from manual annotation used in automatic assertion	GO:0003700	P	Seeded From UniProt	complete
enables	GO:0003677	DNA binding	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR009057	F	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000037 GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0539 UniProtKB-SubCell:SL-0191	C	Seeded From UniProt	complete
enables	GO:0003677	DNA binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0238	F	Seeded From UniProt	complete
enables	GO:0000166	nucleotide binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0547	F	Seeded From UniProt	complete
involved_in	GO:0009813	flavonoid biosynthetic process	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0284	P	Seeded From UniProt	complete
enables	GO:0005524	ATP binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0067	F	Seeded From UniProt	complete
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Notes

References

See Help:References for how to manage references in GONUTS.

↑ ^1.0 ^1.1 ^1.2 Nesi, N et al. (2001) The Arabidopsis TT2 gene encodes an R2R3 MYB domain protein that acts as a key determinant for proanthocyanidin accumulation in developing seed. Plant Cell 13 2099-114 PubMed GONUTS page
↑ ^2.0 ^2.1 Chen, M et al. (2012) The effect of transparent TESTA2 on seed fatty acid biosynthesis and tolerance to environmental stresses during young seedling establishment in Arabidopsis. Plant Physiol. 160 1023-36 PubMed GONUTS page
↑ Riechmann, JL et al. (2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 290 2105-10 PubMed GONUTS page
↑ ^4.0 ^4.1 ^4.2 ^4.3 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

[PMID:11549766-1] 1.0 ^1.1 ^1.2 Nesi, N et al. (2001) The Arabidopsis TT2 gene encodes an R2R3 MYB domain protein that acts as a key determinant for proanthocyanidin accumulation in developing seed. Plant Cell 13 2099-114 PubMed GONUTS page

[PMID:22879396-2] 2.0 ^2.1 Chen, M et al. (2012) The effect of transparent TESTA2 on seed fatty acid biosynthesis and tolerance to environmental stresses during young seedling establishment in Arabidopsis. Plant Physiol. 160 1023-36 PubMed GONUTS page

[PMID:11118137-3] Riechmann, JL et al. (2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 290 2105-10 PubMed GONUTS page

[PMID:21873635-4] 4.0 ^4.1 ^4.2 ^4.3 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

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ARATH:TT2

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