GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
ARATH:SUF4
Contents
| Species (Taxon ID) | Arabidopsis thaliana (Mouse-ear cress). (3702) | |
| Gene Name(s) | SUF4 (ECO:0000303 with PMID:17079264[1]) | |
| Protein Name(s) | Protein SUPPRESSOR OF FRI 4 (ECO:0000303 with PMID:17079264[1]) | |
| External Links | ||
| UniProt | Q9C5G0 | |
| EMBL | AC000107 CP002684 CP002684 AF360277 AY051039 AY085612 AY039540 AK221417 | |
| RefSeq | NP_001077634.1 NP_564369.1 | |
| UniGene | At.25254 | |
| ProteinModelPortal | Q9C5G0 | |
| BioGrid | 25219 | |
| IntAct | Q9C5G0 | |
| MINT | Q9C5G0 | |
| STRING | 3702.AT1G30970.1 | |
| PaxDb | Q9C5G0 | |
| EnsemblPlants | AT1G30970.1 AT1G30970.2 | |
| GeneID | 839984 | |
| Gramene | AT1G30970.1 AT1G30970.2 | |
| KEGG | ath:AT1G30970 | |
| Araport | AT1G30970 | |
| TAIR | locus:2015776 | |
| eggNOG | KOG2893 ENOG410ZJGQ | |
| HOGENOM | HOG000211933 | |
| InParanoid | Q9C5G0 | |
| OMA | MMHGMPP | |
| PhylomeDB | Q9C5G0 | |
| PRO | PR:Q9C5G0 | |
| Proteomes | UP000006548 | |
| ExpressionAtlas | Q9C5G0 | |
| Genevisible | Q9C5G0 | |
| GO | GO:0005634 GO:0003677 GO:0003700 GO:0046872 GO:0030154 GO:0009908 GO:0009910 GO:0006355 | |
| InterPro | IPR003656 IPR036236 IPR013087 | |
| SMART | SM00355 | |
| SUPFAM | SSF57667 | |
| PROSITE | PS50808 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:1905437 |
positive regulation of histone H3-K4 trimethylation |
ECO:0007129 |
P |
Figure 6 (C) shows that SUF4 methylates histone H3-K4. This helps with promoting FLC expression. Arabidopsis thaliana |
complete | |||||
| GO:2001255 |
positive regulation of histone H3-K36 trimethylation |
ECO:0007129 |
P |
Figure 6 (C) shows that SUF4 methylates histone H3-K36. This helps with promoting FLC expression. Arabidopsis thaliana |
complete | |||||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0009910 |
negative regulation of flower development |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
AGI_LocusCode:AT5G10140 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
F |
Seeded From UniProt |
Missing: with/from | |||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000575922 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:1340045 |
C |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000575922 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003676 |
nucleic acid binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0009908 |
flower development |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0046872 |
metal ion binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0007275 |
multicellular organism development |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0030154 |
cell differentiation |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 1.3 Kim, SY & Michaels, SD (2006) SUPPRESSOR OF FRI 4 encodes a nuclear-localized protein that is required for delayed flowering in winter-annual Arabidopsis. Development 133 4699-707 PubMed GONUTS page
- ↑ 2.0 2.1 Ding, L et al. (2013) FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis. Plant Physiol. 163 243-52 PubMed GONUTS page
- ↑ Lai, Z et al. (2014) MED18 interaction with distinct transcription factors regulates multiple plant functions. Nat Commun 5 3064 PubMed GONUTS page
- ↑ 4.0 4.1 4.2 Kim, S et al. (2006) SUPPRESSOR OF FRIGIDA4, encoding a C2H2-Type zinc finger protein, represses flowering by transcriptional activation of Arabidopsis FLOWERING LOCUS C. Plant Cell 18 2985-98 PubMed GONUTS page
- ↑ 5.0 5.1 Riechmann, JL et al. (2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 290 2105-10 PubMed GONUTS page
- ↑ 6.0 6.1 6.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
m
n
o
