ARATH:SCR

Species (Taxon ID)	Arabidopsis thaliana (Mouse-ear cress). (3702)
Gene Name(s)	SCR (synonyms: SGR1)
Protein Name(s)	Protein SCARECROW AtSCR GRAS family protein 20 AtGRAS-20 Protein SHOOT GRAVITROPISM 1
External Links
UniProt	Q9M384
EMBL	U62798 AL132957 CP002686 AY056315 AY080840 AY113991
PIR	T47581 T51244
RefSeq	NP_190990.1
UniGene	At.71814 At.932
ProteinModelPortal	Q9M384
BioGrid	9906
IntAct	Q9M384
STRING	3702.AT3G54220.1
PRIDE	Q9M384
EnsemblPlants	AT3G54220.1
GeneID	824589
KEGG	ath:AT3G54220
GeneFarm	4242
TAIR	AT3G54220
eggNOG	NOG311437
HOGENOM	HOG000238577
InParanoid	Q9M384
OMA	EVKFESW
PhylomeDB	Q9M384
PRO	PR:Q9M384
Proteomes	UP000006548
GO	GO:0005634 GO:0043565 GO:0003700 GO:0008356 GO:0090610 GO:0009630 GO:0048366 GO:0051457 GO:0009956 GO:0006351
InterPro	IPR005202
Pfam	PF03514
PROSITE	PS50985

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Notes	Status
involved_in	GO:0090610	bundle sheath cell fate specification	PMID:24517883^[1]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0051457	maintenance of protein location in nucleus	PMID:17446396^[2]	ECO:0000315	mutant phenotype evidence used in manual assertion	AGI_LocusCode:AT4G37650	P	Seeded From UniProt	complete
involved_in	GO:0048366	leaf development	PMID:24517883^[1]	ECO:0000316	genetic interaction evidence used in manual assertion	AGI_LocusCode:AT5G41920	P	Seeded From UniProt	complete
involved_in	GO:0048364	root development	PMID:26494755^[3]	ECO:0000316	genetic interaction evidence used in manual assertion	AGI_LocusCode:AT1G14580 AGI_LocusCode:AT5G03150	P	Seeded From UniProt	complete
enables	GO:0043565	sequence-specific DNA binding	PMID:17446396^[2]	ECO:0000314	direct assay evidence used in manual assertion		F	Seeded From UniProt	complete
NOT\|enables	GO:0042803	protein homodimerization activity	PMID:17446396^[2]	ECO:0000353	physical interaction evidence used in manual assertion	AGI_LocusCode:AT3G54220	F	Seeded From UniProt	complete
involved_in	GO:0009956	radial pattern formation	PMID:10631180^[4]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0009630	gravitropism	PMID:10322541^[5]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0008356	asymmetric cell division	PMID:8756724^[6]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0008356	asymmetric cell division	PMID:26494755^[3]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	PMID:26494755^[3]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	PMID:15314023^[7]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
enables	GO:0003700	DNA-binding transcription factor activity	PMID:26494755^[3]	ECO:0000315	mutant phenotype evidence used in manual assertion		F	Seeded From UniProt	complete
enables	GO:0003700	DNA-binding transcription factor activity	PMID:8756724^[6]	ECO:0000250	sequence similarity evidence used in manual assertion		F	Seeded From UniProt	Missing: with/from
enables	GO:0003700	DNA-binding transcription factor activity	PMID:11118137^[8]	ECO:0000250	sequence similarity evidence used in manual assertion		F	Seeded From UniProt	Missing: with/from
involved_in	GO:0090610	bundle sheath cell fate specification	PMID:21873635^[9]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000780711 TAIR:locus:2080345	P	Seeded From UniProt	complete
involved_in	GO:0051457	maintenance of protein location in nucleus	PMID:21873635^[9]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000780711 TAIR:locus:2080345	P	Seeded From UniProt	complete
involved_in	GO:0048366	leaf development	PMID:21873635^[9]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000780711 TAIR:locus:2080345	P	Seeded From UniProt	complete
enables	GO:0043565	sequence-specific DNA binding	PMID:21873635^[9]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000780710 TAIR:locus:2005516 TAIR:locus:2080345 TAIR:locus:2099624 TAIR:locus:2120106	F	Seeded From UniProt	complete
involved_in	GO:0009956	radial pattern formation	PMID:21873635^[9]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000780711 TAIR:locus:2080345	P	Seeded From UniProt	complete
involved_in	GO:0009630	gravitropism	PMID:21873635^[9]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000780711 TAIR:locus:2080345	P	Seeded From UniProt	complete
involved_in	GO:0008356	asymmetric cell division	PMID:21873635^[9]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000780711 TAIR:locus:2080345	P	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	PMID:21873635^[9]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000780710 TAIR:locus:2005516 TAIR:locus:2006747 TAIR:locus:2008086 TAIR:locus:2025022 TAIR:locus:2080345 TAIR:locus:2099624 TAIR:locus:2120106 TAIR:locus:2165685 TAIR:locus:2184625 TAIR:locus:2201557 UniProtKB:Q7G7J6 UniProtKB:Q7Y1B6 UniProtKB:Q9LWU9	C	Seeded From UniProt	complete
enables	GO:0003700	DNA-binding transcription factor activity	PMID:21873635^[9]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000780710 TAIR:locus:2005516 TAIR:locus:2080345	F	Seeded From UniProt	complete
involved_in	GO:0006355	regulation of transcription, DNA-templated	GO_REF:0000108	ECO:0000364	evidence based on logical inference from manual annotation used in automatic assertion	GO:0003700	P	Seeded From UniProt	complete
involved_in	GO:0006355	regulation of transcription, DNA-templated	GO_REF:0000108	ECO:0000364	evidence based on logical inference from manual annotation used in automatic assertion	GO:0003700	P	Seeded From UniProt	complete
involved_in	GO:0006355	regulation of transcription, DNA-templated	GO_REF:0000108	ECO:0000364	evidence based on logical inference from manual annotation used in automatic assertion	GO:0003700	P	Seeded From UniProt	complete
involved_in	GO:0006355	regulation of transcription, DNA-templated	GO_REF:0000108	ECO:0000364	evidence based on logical inference from manual annotation used in automatic assertion	GO:0003700	P	Seeded From UniProt	complete
involved_in	GO:0007275	multicellular organism development	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0217	P	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000037 GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0539 UniProtKB-SubCell:SL-0191	C	Seeded From UniProt	complete
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Notes

References

See Help:References for how to manage references in GONUTS.

↑ ^1.0 ^1.1 Cui, H et al. (2014) SCARECROW, SCR-LIKE 23 and SHORT-ROOT control bundle sheath cell fate and function in Arabidopsis thaliana. Plant J. 78 319-27 PubMed GONUTS page
↑ ^2.0 ^2.1 ^2.2 Cui, H et al. (2007) An evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants. Science 316 421-5 PubMed GONUTS page
↑ ^3.0 ^3.1 ^3.2 ^3.3 Moreno-Risueno, MA et al. (2015) Transcriptional control of tissue formation throughout root development. Science 350 426-30 PubMed GONUTS page
↑ Wysocka-Diller, JW et al. (2000) Molecular analysis of SCARECROW function reveals a radial patterning mechanism common to root and shoot. Development 127 595-603 PubMed GONUTS page
↑ Tasaka, M et al. (1999) The endodermis and shoot gravitropism Trends Plant Sci. 4 103-7 PubMed GONUTS page
↑ ^6.0 ^6.1 Di Laurenzio, L et al. (1996) The SCARECROW gene regulates an asymmetric cell division that is essential for generating the radial organization of the Arabidopsis root. Cell 86 423-33 PubMed GONUTS page
↑ Heidstra, R et al. (2004) Mosaic analyses using marked activation and deletion clones dissect Arabidopsis SCARECROW action in asymmetric cell division. Genes Dev. 18 1964-9 PubMed GONUTS page
↑ Riechmann, JL et al. (2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 290 2105-10 PubMed GONUTS page
↑ ^9.0 ^9.1 ^9.2 ^9.3 ^9.4 ^9.5 ^9.6 ^9.7 ^9.8 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

[PMID:24517883-1] 1.0 ^1.1 Cui, H et al. (2014) SCARECROW, SCR-LIKE 23 and SHORT-ROOT control bundle sheath cell fate and function in Arabidopsis thaliana. Plant J. 78 319-27 PubMed GONUTS page

[PMID:17446396-2] 2.0 ^2.1 ^2.2 Cui, H et al. (2007) An evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants. Science 316 421-5 PubMed GONUTS page

[PMID:26494755-3] 3.0 ^3.1 ^3.2 ^3.3 Moreno-Risueno, MA et al. (2015) Transcriptional control of tissue formation throughout root development. Science 350 426-30 PubMed GONUTS page

[PMID:10631180-4] Wysocka-Diller, JW et al. (2000) Molecular analysis of SCARECROW function reveals a radial patterning mechanism common to root and shoot. Development 127 595-603 PubMed GONUTS page

[PMID:10322541-5] Tasaka, M et al. (1999) The endodermis and shoot gravitropism Trends Plant Sci. 4 103-7 PubMed GONUTS page

[PMID:8756724-6] 6.0 ^6.1 Di Laurenzio, L et al. (1996) The SCARECROW gene regulates an asymmetric cell division that is essential for generating the radial organization of the Arabidopsis root. Cell 86 423-33 PubMed GONUTS page

[PMID:15314023-7] Heidstra, R et al. (2004) Mosaic analyses using marked activation and deletion clones dissect Arabidopsis SCARECROW action in asymmetric cell division. Genes Dev. 18 1964-9 PubMed GONUTS page

[PMID:11118137-8] Riechmann, JL et al. (2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 290 2105-10 PubMed GONUTS page

[PMID:21873635-9] 9.0 ^9.1 ^9.2 ^9.3 ^9.4 ^9.5 ^9.6 ^9.7 ^9.8 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

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ARATH:SCR

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