ARATH:PUB13

Species (Taxon ID)	Arabidopsis thaliana (Mouse-ear cress). (3702)
Gene Name(s)	PUB13
Protein Name(s)	U-box domain-containing protein 13 Plant U-box protein 13
External Links
UniProt	Q9SNC6
EMBL	AL133314 CP002686 AY042791 AY128813
PIR	T45588
RefSeq	NP_190235.1
UniGene	At.23070
ProteinModelPortal	Q9SNC6
SMR	Q9SNC6
BioGrid	9124
STRING	3702.AT3G46510.1-P
PaxDb	Q9SNC6
PRIDE	Q9SNC6
EnsemblPlants	AT3G46510.1
GeneID	823804
KEGG	ath:AT3G46510
TAIR	AT3G46510
eggNOG	NOG269633
HOGENOM	HOG000238412
InParanoid	Q9SNC6
OMA	EANDIEP
PhylomeDB	Q9SNC6
BioCyc	ARA:GQT-1580-MONOMER
UniPathway	UPA00143
Proteomes	UP000006548
Genevestigator	Q9SNC6
GO	GO:0005737 GO:0005829 GO:0005634 GO:0016874 GO:0070696 GO:0004842 GO:0042742 GO:0016567
Gene3D	1.25.10.10 3.30.40.10
InterPro	IPR011989 IPR016024 IPR000225 IPR003613 IPR013083
Pfam	PF00514 PF04564
SMART	SM00185 SM00504
SUPFAM	SSF48371
PROSITE	PS50176 PS51698

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Notes	Status
	GO:0043066	negative regulation of apoptotic process	PMID:22383540^[1]	ECO:0000315			P	Fig. 3	complete CACAO 3923
	GO:2000028	regulation of photoperiodism, flowering	PMID:22383540^[1]	ECO:0000315			P	Fig. 7. Results were most notable in MD exposure. Negative regulator of flowering.	complete CACAO 3924
involved_in	GO:2000028	regulation of photoperiodism, flowering	PMID:22383540^[1]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0043066	negative regulation of apoptotic process	PMID:22383540^[1]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
enables	GO:0070696	transmembrane receptor protein serine/threonine kinase binding	PMID:18552232^[2]	ECO:0000353	physical interaction evidence used in manual assertion	UniProtKB:Q8RWZ5	F	Seeded From UniProt	complete
enables	GO:0070696	transmembrane receptor protein serine/threonine kinase binding	PMID:18552232^[2]	ECO:0000353	physical interaction evidence used in manual assertion	UniProtKB:O81833	F	Seeded From UniProt	complete
enables	GO:0070696	transmembrane receptor protein serine/threonine kinase binding	PMID:18552232^[2]	ECO:0000353	physical interaction evidence used in manual assertion	UniProtKB:O81905	F	Seeded From UniProt	complete
enables	GO:0070696	transmembrane receptor protein serine/threonine kinase binding	PMID:18552232^[2]	ECO:0000353	physical interaction evidence used in manual assertion	UniProtKB:O64782	F	Seeded From UniProt	complete
enables	GO:0070696	transmembrane receptor protein serine/threonine kinase binding	PMID:18552232^[2]	ECO:0000353	physical interaction evidence used in manual assertion	UniProtKB:Q9LPZ9	F	Seeded From UniProt	complete
enables	GO:0070696	transmembrane receptor protein serine/threonine kinase binding	PMID:18552232^[2]	ECO:0000353	physical interaction evidence used in manual assertion	UniProtKB:Q39086	F	Seeded From UniProt	complete
enables	GO:0070696	transmembrane receptor protein serine/threonine kinase binding	PMID:18552232^[2]	ECO:0000353	physical interaction evidence used in manual assertion	UniProtKB:Q9S972	F	Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm	PMID:18552232^[2]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	PMID:18552232^[2]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
involved_in	GO:0050777	negative regulation of immune response	PMID:29182677^[3]	ECO:0000316	genetic interaction evidence used in manual assertion	AGI_LocusCode:AT2G28830	P	Seeded From UniProt	complete
involved_in	GO:0042742	defense response to bacterium	PMID:21680842^[4]	ECO:0000316	genetic interaction evidence used in manual assertion	AGI_LocusCode:AT2G28830	P	Seeded From UniProt	complete
involved_in	GO:0016567	protein ubiquitination	PMID:14657406^[5]	ECO:0000314	direct assay evidence used in manual assertion		P	Seeded From UniProt	complete
part_of	GO:0005829	cytosol	PMID:21166475^[6]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
part_of	GO:0005829	cytosol	PMID:18552232^[2]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	PMID:18552232^[2]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
enables	GO:0004842	ubiquitin-protein transferase activity	PMID:21680842^[4]	ECO:0000314	direct assay evidence used in manual assertion		F	Seeded From UniProt	complete
enables	GO:0004842	ubiquitin-protein transferase activity	PMID:14657406^[5]	ECO:0000314	direct assay evidence used in manual assertion		F	Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm	PMID:21873635^[7]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000593603 TAIR:locus:2075140 UniProtKB:O22193	C	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	PMID:21873635^[7]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000593603 TAIR:locus:2075140 UniProtKB:Q0IMG9 UniProtKB:Q9C9A6 UniProtKB:Q9SRT0	C	Seeded From UniProt	complete
enables	GO:0004842	ubiquitin-protein transferase activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR003613	F	Seeded From UniProt	complete
involved_in	GO:0007166	cell surface receptor signaling pathway	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR036537	P	Seeded From UniProt	complete
involved_in	GO:0016567	protein ubiquitination	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR003613	P	Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm	GO_REF:0000037 GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0963 UniProtKB-SubCell:SL-0086	C	Seeded From UniProt	complete
enables	GO:0016740	transferase activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0808	F	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000037 GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0539 UniProtKB-SubCell:SL-0191	C	Seeded From UniProt	complete
involved_in	GO:0016567	protein ubiquitination	GO_REF:0000041	ECO:0000322	imported manually asserted information used in automatic assertion	UniPathway:UPA00143	P	Seeded From UniProt	complete
edit table

Notes

References

See Help:References for how to manage references in GONUTS.

↑ ^1.0 ^1.1 ^1.2 ^1.3 Li, W et al. (2012) The U-Box/ARM E3 ligase PUB13 regulates cell death, defense, and flowering time in Arabidopsis. Plant Physiol. 159 239-50 PubMed GONUTS page
↑ ^2.00 ^2.01 ^2.02 ^2.03 ^2.04 ^2.05 ^2.06 ^2.07 ^2.08 ^2.09 ^2.10 Samuel, MA et al. (2008) Interactions between the S-domain receptor kinases and AtPUB-ARM E3 ubiquitin ligases suggest a conserved signaling pathway in Arabidopsis. Plant Physiol. 147 2084-95 PubMed GONUTS page
↑ Yamaguchi, K et al. (2017) Arabidopsis ubiquitin ligase PUB12 interacts with and negatively regulates Chitin Elicitor Receptor Kinase 1 (CERK1). PLoS ONE 12 e0188886 PubMed GONUTS page
↑ ^4.0 ^4.1 Lu, D et al. (2011) Direct ubiquitination of pattern recognition receptor FLS2 attenuates plant innate immunity. Science 332 1439-42 PubMed GONUTS page
↑ ^5.0 ^5.1 Mudgil, Y et al. (2004) A large complement of the predicted Arabidopsis ARM repeat proteins are members of the U-box E3 ubiquitin ligase family. Plant Physiol. 134 59-66 PubMed GONUTS page
↑ Ito, J et al. (2011) Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. J. Proteome Res. 10 1571-82 PubMed GONUTS page
↑ ^7.0 ^7.1 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

[PMID:22383540-1] 1.0 ^1.1 ^1.2 ^1.3 Li, W et al. (2012) The U-Box/ARM E3 ligase PUB13 regulates cell death, defense, and flowering time in Arabidopsis. Plant Physiol. 159 239-50 PubMed GONUTS page

[PMID:18552232-2] 2.00 ^2.01 ^2.02 ^2.03 ^2.04 ^2.05 ^2.06 ^2.07 ^2.08 ^2.09 ^2.10 Samuel, MA et al. (2008) Interactions between the S-domain receptor kinases and AtPUB-ARM E3 ubiquitin ligases suggest a conserved signaling pathway in Arabidopsis. Plant Physiol. 147 2084-95 PubMed GONUTS page

[PMID:29182677-3] Yamaguchi, K et al. (2017) Arabidopsis ubiquitin ligase PUB12 interacts with and negatively regulates Chitin Elicitor Receptor Kinase 1 (CERK1). PLoS ONE 12 e0188886 PubMed GONUTS page

[PMID:21680842-4] 4.0 ^4.1 Lu, D et al. (2011) Direct ubiquitination of pattern recognition receptor FLS2 attenuates plant innate immunity. Science 332 1439-42 PubMed GONUTS page

[PMID:14657406-5] 5.0 ^5.1 Mudgil, Y et al. (2004) A large complement of the predicted Arabidopsis ARM repeat proteins are members of the U-box E3 ubiquitin ligase family. Plant Physiol. 134 59-66 PubMed GONUTS page

[PMID:21166475-6] Ito, J et al. (2011) Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. J. Proteome Res. 10 1571-82 PubMed GONUTS page

[PMID:21873635-7] 7.0 ^7.1 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

[1]

[2]

[3]

[4]

[5]

[6]

[7]

ARATH:PUB13

Contents

Annotations

Notes

References

a

b

c

d

e

g

m

n

p

r

s

t

u

v

Navigation menu

Personal tools

Namespaces

Variants

Views

More

Search

Navigation

Cacao

Links

Tools