ARATH:FAMA

Species (Taxon ID)	Arabidopsis thaliana (Mouse-ear cress). (3702)
Gene Name(s)	FMA (synonyms: BHLH97, EN14)
Protein Name(s)	Transcription factor FAMA Basic helix-loop-helix protein 97 AtbHLH97 bHLH 97 Transcription factor EN 14 bHLH transcription factor bHLH097
External Links
UniProt	Q56YJ8
EMBL	AB028621 CP002686 AK221324 BT028961 AF488624
RefSeq	NP_189056.2
UniGene	At.37586
ProteinModelPortal	Q56YJ8
BioGrid	7332
IntAct	Q56YJ8
STRING	3702.AT3G24140.1-P
PRIDE	Q56YJ8
EnsemblPlants	AT3G24140.1
GeneID	822000
KEGG	ath:AT3G24140
TAIR	AT3G24140
eggNOG	NOG326823
HOGENOM	HOG000238962
InParanoid	Q56YJ8
OMA	SFIHANT
PhylomeDB	Q56YJ8
Proteomes	UP000006548
ExpressionAtlas	Q56YJ8
Genevestigator	Q56YJ8
GO	GO:0005634 GO:0003677 GO:0003700 GO:0010052 GO:0051782 GO:0045597 GO:0045893 GO:0006351
Gene3D	4.10.280.10
InterPro	IPR011598
Pfam	PF00010
SMART	SM00353
SUPFAM	SSF47459
PROSITE	PS50888

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Notes	Status
involved_in	GO:0090547	response to low humidity	PMID:22442411^[1]	ECO:0000270	expression pattern evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0010444	guard mother cell differentiation	PMID:24571519^[2]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0061086	negative regulation of histone H3-K27 methylation	PMID:24654956^[3]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0010377	guard cell fate commitment	PMID:25303364^[4]	ECO:0000316	genetic interaction evidence used in manual assertion	UniProtKB:Q9LKZ3	P	Seeded From UniProt	complete
involved_in	GO:0051782	negative regulation of cell division	PMID:17088607^[5]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0045893	positive regulation of transcription, DNA-templated	PMID:17088607^[5]	ECO:0000314	direct assay evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0045597	positive regulation of cell differentiation	PMID:17088607^[5]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0010052	guard cell differentiation	PMID:17088607^[5]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	PMID:17088607^[5]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
enables	GO:0003700	DNA-binding transcription factor activity	PMID:12679534^[6]	ECO:0000250	sequence similarity evidence used in manual assertion		F	Seeded From UniProt	Missing: with/from
enables	GO:0003700	DNA-binding transcription factor activity	PMID:11118137^[7]	ECO:0000250	sequence similarity evidence used in manual assertion		F	Seeded From UniProt	Missing: with/from
involved_in	GO:0045893	positive regulation of transcription, DNA-templated	PMID:21873635^[8]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN001692031 TAIR:locus:2093746	P	Seeded From UniProt	complete
involved_in	GO:0010374	stomatal complex development	PMID:21873635^[8]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN001692031 TAIR:locus:2082400 TAIR:locus:2093746 TAIR:locus:2154197	P	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	PMID:21873635^[8]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN001692031 TAIR:locus:2082400 TAIR:locus:2093746 TAIR:locus:2154197	C	Seeded From UniProt	complete
enables	GO:0046983	protein dimerization activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR011598 InterPro:IPR036638	F	Seeded From UniProt	complete
enables	GO:0003677	DNA binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0238	F	Seeded From UniProt	complete
involved_in	GO:0007275	multicellular organism development	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0217	P	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000037 GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0539 UniProtKB-SubCell:SL-0191	C	Seeded From UniProt	complete
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Notes

References

See Help:References for how to manage references in GONUTS.

↑ Tricker, PJ et al. (2012) Low relative humidity triggers RNA-directed de novo DNA methylation and suppression of genes controlling stomatal development. J. Exp. Bot. 63 3799-813 PubMed GONUTS page
↑ Lee, E et al. (2014) Deep functional redundancy between FAMA and FOUR LIPS in stomatal development. Plant J. 78 555-65 PubMed GONUTS page
↑ Lee, E et al. (2014) Arabidopsis guard cell integrity involves the epigenetic stabilization of the FLP and FAMA transcription factor genes. Plant J. 78 566-77 PubMed GONUTS page
↑ Matos, JL et al. (2014) Irreversible fate commitment in the Arabidopsis stomatal lineage requires a FAMA and RETINOBLASTOMA-RELATED module. Elife 3 PubMed GONUTS page
↑ ^5.0 ^5.1 ^5.2 ^5.3 ^5.4 Ohashi-Ito, K & Bergmann, DC (2006) Arabidopsis FAMA controls the final proliferation/differentiation switch during stomatal development. Plant Cell 18 2493-505 PubMed GONUTS page
↑ Heim, MA et al. (2003) The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Mol. Biol. Evol. 20 735-47 PubMed GONUTS page
↑ Riechmann, JL et al. (2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 290 2105-10 PubMed GONUTS page
↑ ^8.0 ^8.1 ^8.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

[PMID:22442411-1] Tricker, PJ et al. (2012) Low relative humidity triggers RNA-directed de novo DNA methylation and suppression of genes controlling stomatal development. J. Exp. Bot. 63 3799-813 PubMed GONUTS page

[PMID:24571519-2] Lee, E et al. (2014) Deep functional redundancy between FAMA and FOUR LIPS in stomatal development. Plant J. 78 555-65 PubMed GONUTS page

[PMID:24654956-3] Lee, E et al. (2014) Arabidopsis guard cell integrity involves the epigenetic stabilization of the FLP and FAMA transcription factor genes. Plant J. 78 566-77 PubMed GONUTS page

[PMID:25303364-4] Matos, JL et al. (2014) Irreversible fate commitment in the Arabidopsis stomatal lineage requires a FAMA and RETINOBLASTOMA-RELATED module. Elife 3 PubMed GONUTS page

[PMID:17088607-5] 5.0 ^5.1 ^5.2 ^5.3 ^5.4 Ohashi-Ito, K & Bergmann, DC (2006) Arabidopsis FAMA controls the final proliferation/differentiation switch during stomatal development. Plant Cell 18 2493-505 PubMed GONUTS page

[PMID:12679534-6] Heim, MA et al. (2003) The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Mol. Biol. Evol. 20 735-47 PubMed GONUTS page

[PMID:11118137-7] Riechmann, JL et al. (2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 290 2105-10 PubMed GONUTS page

[PMID:21873635-8] 8.0 ^8.1 ^8.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

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ARATH:FAMA

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