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ARATH:DRE1B
Contents
| Species (Taxon ID) | Arabidopsis thaliana (Mouse-ear cress). (3702) | |
| Gene Name(s) | DREB1B (synonyms: CBF1, ERF029) | |
| Protein Name(s) | Dehydration-responsive element-binding protein 1B
Protein DREB1B C-repeat/dehydration-responsive element-binding factor 1 C-repeat-binding factor 1 CRT/DRE-binding factor 1 | |
| External Links | ||
| UniProt | P93835 | |
| EMBL | U77378 AB007788 AB013816 AF076155 AY667247 AL022197 AL161563 CP002687 | |
| PIR | JE0298 | |
| RefSeq | NP_567721.1 | |
| UniGene | At.232 | |
| ProteinModelPortal | P93835 | |
| SMR | P93835 | |
| BioGrid | 13940 | |
| IntAct | P93835 | |
| PRIDE | P93835 | |
| EnsemblPlants | AT4G25490.1 | |
| GeneID | 828653 | |
| KEGG | ath:AT4G25490 | |
| GeneFarm | 3595 | |
| TAIR | AT4G25490 | |
| eggNOG | NOG303203 | |
| HOGENOM | HOG000237624 | |
| InParanoid | P93835 | |
| KO | K09286 | |
| OMA | ADDAYMS | |
| PhylomeDB | P93835 | |
| Proteomes | UP000006548 | |
| ExpressionAtlas | P93835 | |
| Genevestigator | P93835 | |
| GO | GO:0005634 GO:0003677 GO:0003700 GO:0009631 GO:0045893 GO:0009409 GO:0006351 | |
| Gene3D | 3.30.730.10 | |
| InterPro | IPR001471 IPR016177 | |
| Pfam | PF00847 | |
| PRINTS | PR00367 | |
| SMART | SM00380 | |
| SUPFAM | SSF54171 | |
| PROSITE | PS51032 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0009648 |
photoperiodism |
ECO:0000314 |
P |
CBF1 transcript levels at zeitgeber time 8 (ZT8) were about three to fivefold higher in short day (SD; 8 hr. light, 16 hr. dark) plants compared with long day (LD; 16 hr. light, 8 hr.dark) plants. These levels were measured via qRT-PCR (See Fig. S1) |
complete | |||||
|
involved_in |
GO:0045893 |
positive regulation of transcription, DNA-templated |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
| GO:0043565 |
sequence-specific DNA binding |
ECO:0000314 |
F |
Fig. 4. CBF1 binds to C-repeat/DRE. |
complete | |||||
|
involved_in |
GO:0009631 |
cold acclimation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0009631 |
cold acclimation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
| GO:0006950 |
response to stress |
ECO:0000314 |
P |
Fig. 6: Northern shows that low termperature/water deficit conditions do not change CBF1 transcript levels |
complete | |||||
| GO:0009409 |
response to cold |
ECO:0000315 |
P |
Figure 1 shows the expression of CBF-1 in warm and cold temperature by comparing WT with the mutants. |
complete | |||||
|
involved_in |
GO:0009631 |
cold acclimation |
ECO:0000270 |
expression pattern evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0009409 |
response to cold |
ECO:0000270 |
expression pattern evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
F |
Seeded From UniProt |
Missing: with/from | |||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Lee, CM & Thomashow, MF (2012) Photoperiodic regulation of the C-repeat binding factor (CBF) cold acclimation pathway and freezing tolerance in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 109 15054-9 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 Stockinger, EJ et al. (1997) Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit. Proc. Natl. Acad. Sci. U.S.A. 94 1035-40 PubMed GONUTS page
- ↑ Jaglo-Ottosen, KR et al. (1998) Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance. Science 280 104-6 PubMed GONUTS page
- ↑ Novillo, F et al. (2007) Arabidopsis CBF1 and CBF3 have a different function than CBF2 in cold acclimation and define different gene classes in the CBF regulon. Proc. Natl. Acad. Sci. U.S.A. 104 21002-7 PubMed GONUTS page
- ↑ Gilmour, SJ et al. (2004) Arabidopsis transcriptional activators CBF1, CBF2, and CBF3 have matching functional activities. Plant Mol. Biol. 54 767-81 PubMed GONUTS page
- ↑ Shinwari, ZK et al. (1998) An Arabidopsis gene family encoding DRE/CRT binding proteins involved in low-temperature-responsive gene expression. Biochem. Biophys. Res. Commun. 250 161-70 PubMed GONUTS page
- ↑ Vergnolle, C et al. (2005) The cold-induced early activation of phospholipase C and D pathways determines the response of two distinct clusters of genes in Arabidopsis cell suspensions. Plant Physiol. 139 1217-33 PubMed GONUTS page
- ↑ Riechmann, JL et al. (2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 290 2105-10 PubMed GONUTS page
