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ARATH:ATR

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Species (Taxon ID) Arabidopsis thaliana (Mouse-ear cress). (3702)
Gene Name(s) ATR (synonyms: RAD3)
Protein Name(s) Serine/threonine-protein kinase ATR

AtATR Ataxia telangiectasia-mutated and Rad3-related homolog DNA repair protein ATR Rad3-like protein AtRAD3

External Links
UniProt Q9FKS4
EMBL AB040133
AB011477
CP002688
RefSeq NP_198898.2
UniGene At.475
ProteinModelPortal Q9FKS4
SMR Q9FKS4
STRING 3702.AT5G40820.1-P
PaxDb Q9FKS4
PRIDE Q9FKS4
EnsemblPlants AT5G40820.1
GeneID 834082
KEGG ath:AT5G40820
GeneFarm 4495
TAIR AT5G40820
eggNOG COG5032
HOGENOM HOG000030210
InParanoid Q9FKS4
KO K06640
OMA MRGCLKD
PhylomeDB Q9FKS4
BioCyc ARA:AT5G40820-MONOMER
Reactome REACT_220111
REACT_237966
Proteomes UP000006548
Genevestigator Q9FKS4
GO GO:0005634
GO:0009506
GO:0005524
GO:0004674
GO:0006281
GO:0007126
GO:0032504
GO:0033044
GO:0032204
GO:0010044
GO:0010332
GO:0043247
GO:0007004
Gene3D 1.10.1070.11
1.25.40.10
InterPro IPR016024
IPR003152
IPR011009
IPR000403
IPR018936
IPR003151
IPR014009
IPR011990
IPR012993
Pfam PF02259
PF02260
PF00454
PF08064
SMART SM00146
SM00802
SUPFAM SSF48371
SSF56112
PROSITE PS51189
PS51190
PS00916
PS50290

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

involved_in

GO:0006282

regulation of DNA repair

PMID:24207055[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0031347

regulation of defense response

PMID:24207055[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0051321

meiotic cell cycle

PMID:18435824[2]

ECO:0000316

genetic interaction evidence used in manual assertion

AGI_LocusCode:AT5G40820

P

Seeded From UniProt

complete

involved_in

GO:0033044

regulation of chromosome organization

PMID:16166376[3]

ECO:0000316

genetic interaction evidence used in manual assertion

AGI_LocusCode:AT3G48190

P

Seeded From UniProt

complete

involved_in

GO:0032504

multicellular organism reproduction

PMID:16166376[3]

ECO:0000316

genetic interaction evidence used in manual assertion

AGI_LocusCode:AT3G48190

P

Seeded From UniProt

complete

involved_in

GO:0032204

regulation of telomere maintenance

PMID:16166376[3]

ECO:0000316

genetic interaction evidence used in manual assertion

AGI_LocusCode:AT5G16850

P

Seeded From UniProt

complete

involved_in

GO:0010332

response to gamma radiation

PMID:17227549[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0010044

response to aluminum ion

PMID:18835170[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0009506

plasmodesma

PMID:21533090[6]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0007004

telomere maintenance via telomerase

PMID:10611295[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006303

double-strand break repair via nonhomologous end joining

PMID:25641249[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006281

DNA repair

PMID:18435824[2]

ECO:0000316

genetic interaction evidence used in manual assertion

AGI_LocusCode:AT5G40820

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:21873635[9]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0045035
FB:FBgn0053554
MGI:MGI:104779
MGI:MGI:1928394
PANTHER:PTN000124197
RGD:1593265
RGD:68371
SGD:S000000340
SGD:S000001141
SGD:S000003827
UniProtKB:P78527
UniProtKB:Q13315
UniProtKB:Q96Q15
UniProtKB:Q9FR53
UniProtKB:Q9Y4A5
WB:WBGene00000226
WB:WBGene00007028

C

Seeded From UniProt

complete

enables

GO:0004674

protein serine/threonine kinase activity

PMID:21873635[9]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN001673376
PomBase:SPBC216.05
UniProtKB:Q13535

F

Seeded From UniProt

complete

involved_in

GO:0000723

telomere maintenance

PMID:21873635[9]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0004367
PANTHER:PTN001673376
PomBase:SPBC216.05
SGD:S000000340

P

Seeded From UniProt

complete

involved_in

GO:0000077

DNA damage checkpoint

PMID:21873635[9]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0004367
MGI:MGI:108028
PANTHER:PTN001673376
UniProtKB:C8VB89
UniProtKB:Q13535
WB:WBGene00000226

P

Seeded From UniProt

complete

involved_in

GO:0006468

protein phosphorylation

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0004674

P

Seeded From UniProt

complete

involved_in

GO:0006468

protein phosphorylation

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0004674

P

Seeded From UniProt

complete

involved_in

GO:0006468

protein phosphorylation

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0004674

P

Seeded From UniProt

complete

enables

GO:0004674

protein serine/threonine kinase activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR012993

F

Seeded From UniProt

complete

enables

GO:0016301

kinase activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR018936
InterPro:IPR036940

F

Seeded From UniProt

complete

involved_in

GO:0043247

telomere maintenance in response to DNA damage

PMID:16166376[3]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0004674

protein serine/threonine kinase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0723

F

Seeded From UniProt

complete

enables

GO:0016301

kinase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0418

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

enables

GO:0016740

transferase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0808

F

Seeded From UniProt

complete

enables

GO:0000166

nucleotide binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0547

F

Seeded From UniProt

complete

involved_in

GO:0006952

defense response

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0611

P

Seeded From UniProt

complete

enables

GO:0005524

ATP binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0067

F

Seeded From UniProt

complete

involved_in

GO:0006281

DNA repair

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0234

P

Seeded From UniProt

complete

involved_in

GO:0007049

cell cycle

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0131

P

Seeded From UniProt

complete

involved_in

GO:0006974

cellular response to DNA damage stimulus

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0227

P

Seeded From UniProt

complete

involved_in

GO:0016310

phosphorylation

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0418

P

Seeded From UniProt

complete

edit table

Notes

References

See Help:References for how to manage references in GONUTS.

  1. ↑ 1.0 1.1 Yan, S et al. (2013) Salicylic acid activates DNA damage responses to potentiate plant immunity. Mol. Cell 52 602-10 PubMed GONUTS page
  2. ↑ 2.0 2.1 Culligan, KM & Britt, AB (2008) Both ATM and ATR promote the efficient and accurate processing of programmed meiotic double-strand breaks. Plant J. 55 629-38 PubMed GONUTS page
  3. ↑ 3.0 3.1 3.2 3.3 Vespa, L et al. (2005) ATM and ATR make distinct contributions to chromosome end protection and the maintenance of telomeric DNA in Arabidopsis. Genes Dev. 19 2111-5 PubMed GONUTS page
  4. ↑ Culligan, KM et al. (2006) ATR and ATM play both distinct and additive roles in response to ionizing radiation. Plant J. 48 947-61 PubMed GONUTS page
  5. ↑ Rounds, MA & Larsen, PB (2008) Aluminum-dependent root-growth inhibition in Arabidopsis results from AtATR-regulated cell-cycle arrest. Curr. Biol. 18 1495-500 PubMed GONUTS page
  6. ↑ Fernandez-Calvino, L et al. (2011) Arabidopsis plasmodesmal proteome. PLoS ONE 6 e18880 PubMed GONUTS page
  7. ↑ Fitzgerald, MS et al. (1999) Disruption of the telomerase catalytic subunit gene from Arabidopsis inactivates telomerase and leads to a slow loss of telomeric DNA. Proc. Natl. Acad. Sci. U.S.A. 96 14813-8 PubMed GONUTS page
  8. ↑ Park, SY et al. (2015) Agrobacterium T-DNA integration into the plant genome can occur without the activity of key non-homologous end-joining proteins. Plant J. 81 934-46 PubMed GONUTS page
  9. ↑ 9.0 9.1 9.2 9.3 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
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