GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

YERPE:A0A384L3J4

From GONUTS
Jump to: navigation, search
Species (Taxon ID) Yersinia pestis. (632)
Gene Name(s) cap (ECO:0000313 with EMBL:CAL18860.1)
Protein Name(s) cAMP-activated global transcriptional regulator CRP (ECO:0000313 with EMBL:PWF35750.1)

cAMP-regulatory protein (ECO:0000313 with EMBL:CAL18860.1)

External Links
UniProt A0A384L3J4
EMBL AL590842
QANK01000056
PIR AC0022
RefSeq WP_002212297.1
YP_002345259.1
PDB 6DT4
PDBsum 6DT4
DNASU 1148903
GeneID 1173020
31911418
KEGG ype:YPO0175
ypj:CH55_2915
ypl:CH46_741
ypv:BZ15_3396
ypw:CH59_2267
PATRIC fig|1028802.3.peg.174
eggNOG ENOG4107RYR
COG0664
HOGENOM HOG000250565
KO K10914
Proteomes UP000000815
CollecTF EXPREG_00000ff0
GO GO:0003677
GO:0003700
CDD cd00038
Gene3D 1.10.10.10
2.60.120.10
InterPro IPR018490
IPR018488
IPR000595
IPR012318
IPR014710
IPR018335
IPR036388
IPR036390
Pfam PF00027
PF13545
PRINTS PR00034
SMART SM00100
SM00419
SUPFAM SSF46785
SSF51206
PROSITE PS00888
PS00889
PS50042
PS00042
PS51063

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

enables

GO:0003677

DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR012318

F

Seeded From UniProt

enables

GO:0003700

DNA-binding transcription factor activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR018335

F

Seeded From UniProt

involved_in

GO:0006355

regulation of transcription, DNA-templated

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR012318
InterPro:IPR018335

P

Seeded From UniProt

enables

GO:0003677

DNA binding

GO_REF:0000038

ECO:0000323

imported automatically asserted information used in automatic assertion

UniProtKB-KW:KW-0238

F

Seeded From UniProt

enables

GO:0003677

DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR012318

F

Seeded From UniProt

enables

GO:0003700

DNA-binding transcription factor activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR018335

F

Seeded From UniProt

involved_in

GO:0006355

regulation of transcription, DNA-templated

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR012318
InterPro:IPR018335

P

Seeded From UniProt

enables

GO:0003677

DNA binding

GO_REF:0000038

ECO:0000323

imported automatically asserted information used in automatic assertion

UniProtKB-KW:KW-0238

F

Seeded From UniProt

GO:0045892

negative regulation of transcription, DNA-templated

PMID:19703315[1]

ECO:0005657

primer extension assay evidence used in manual assertion

P

Figure 5 shows the primer extension analysis of the sycO-ypkA-yopJ operon with and without CRP. A wild type with CRP and a strain without CRP were used. The WT shows no primer extension product while the strain without CRP shows product. The presence of the primer extension product in deleted CRP indicates mRNA presence. The lack of primer extension product in the WT indicates no mRNA presence. Because mRNA presence is high only in the deleted CRP strain, CRP is repressing transcription of the sycO-ypkA-yopJ operon.

complete
CACAO 13723

Notes

References

See Help:References for how to manage references in GONUTS.

  1. Zhan, L et al. (2009) Direct and negative regulation of the sycO-ypkA-ypoJ operon by cyclic AMP receptor protein (CRP) in Yersinia pestis. BMC Microbiol. 9 178 PubMed GONUTS page