GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

YEAST:RT107

From GONUTS
Jump to: navigation, search
Species (Taxon ID) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast). (559292)
Gene Name(s) RTT107 (synonyms: ESC4)
Protein Name(s) Regulator of Ty1 transposition protein 107

Establishes silent chromatin protein 4

External Links
UniProt P38850
EMBL U10397
BK006934
PIR S46755
RefSeq NP_012024.1
PDB 3T7I
3T7J
3T7K
PDBsum 3T7I
3T7J
3T7K
ProteinModelPortal P38850
SMR P38850
BioGrid 36588
DIP DIP-6297N
IntAct P38850
MINT MINT-702893
STRING 4932.YHR154W
MaxQB P38850
PaxDb P38850
PeptideAtlas P38850
EnsemblFungi [example_ID YHR154W]
GeneID 856559
KEGG sce:YHR154W
CYGD YHR154w
SGD S000001197
eggNOG NOG248673
InParanoid P38850
OMA RINTIFA
OrthoDB EOG769ZTW
BioCyc YEAST:G3O-31189-MONOMER
NextBio 982381
Proteomes UP000002311
Genevestigator P38850
GO GO:0035361
GO:0005634
GO:0006302
GO:0010526
Gene3D 3.40.50.10190
InterPro IPR001357
Pfam PF00533
SMART SM00292
SUPFAM SSF52113
PROSITE PS50172

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

part_of

GO:0071944

cell periphery

PMID:26928762[1]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:14562095[2]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:22842922[3]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:1903775

regulation of DNA double-strand break processing

PMID:26490958[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:2000001

regulation of DNA damage checkpoint

PMID:26490958[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:1990683

DNA double-strand break attachment to nuclear envelope

PMID:27056668[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0035361

Cul8-RING ubiquitin ligase complex

PMID:20139071[6]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0010526

negative regulation of transposition, RNA-mediated

PMID:11779788[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006302

double-strand break repair

PMID:14988729[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0003674

molecular_function

GO_REF:0000015

ECO:0000307

no biological data found used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:2000001

regulation of DNA damage checkpoint

PMID:21873635[9]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN001413784
SGD:S000001197

P

Seeded From UniProt

complete

involved_in

GO:1990683

DNA double-strand break attachment to nuclear envelope

PMID:21873635[9]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN001413784
SGD:S000001197

P

Seeded From UniProt

complete

part_of

GO:0035361

Cul8-RING ubiquitin ligase complex

PMID:21873635[9]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN001413784
SGD:S000001197

C

Seeded From UniProt

complete

involved_in

GO:0006302

double-strand break repair

PMID:21873635[9]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN001413784
SGD:S000001197

P

Seeded From UniProt

complete

involved_in

GO:0006974

cellular response to DNA damage stimulus

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0227

P

Seeded From UniProt

complete

involved_in

GO:0006281

DNA repair

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0234

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. Yofe, I et al. (2016) One library to make them all: streamlining the creation of yeast libraries via a SWAp-Tag strategy. Nat. Methods 13 371-378 PubMed GONUTS page
  2. Huh, WK et al. (2003) Global analysis of protein localization in budding yeast. Nature 425 686-91 PubMed GONUTS page
  3. Tkach, JM et al. (2012) Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress. Nat. Cell Biol. 14 966-76 PubMed GONUTS page
  4. 4.0 4.1 Dibitetto, D et al. (2016) Slx4 and Rtt107 control checkpoint signalling and DNA resection at double-strand breaks. Nucleic Acids Res. 44 669-82 PubMed GONUTS page
  5. Horigome, C et al. (2016) PolySUMOylation by Siz2 and Mms21 triggers relocation of DNA breaks to nuclear pores through the Slx5/Slx8 STUbL. Genes Dev. 30 931-45 PubMed GONUTS page
  6. Mimura, S et al. (2010) Cul8/Rtt101 forms a variety of protein complexes that regulate DNA damage response and transcriptional silencing. J. Biol. Chem. 285 9858-67 PubMed GONUTS page
  7. Scholes, DT et al. (2001) Multiple regulators of Ty1 transposition in Saccharomyces cerevisiae have conserved roles in genome maintenance. Genetics 159 1449-65 PubMed GONUTS page
  8. Rouse, J (2004) Esc4p, a new target of Mec1p (ATR), promotes resumption of DNA synthesis after DNA damage. EMBO J. 23 1188-97 PubMed GONUTS page
  9. 9.0 9.1 9.2 9.3 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page