GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

YEAST:RDR1

From GONUTS
Jump to: navigation, search
Species (Taxon ID) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast). (559292)
Gene Name(s) RDR1
Protein Name(s) Protein RDR1

Repressor of drug resistance protein 1

External Links
UniProt Q08904
EMBL Z75288
BK006948
PIR S67292
RefSeq NP_015025.3
ProteinModelPortal Q08904
SMR Q08904
BioGrid 34761
DIP DIP-3904N
IntAct Q08904
MINT MINT-508330
STRING 4932.YOR380W
PaxDb Q08904
PeptideAtlas Q08904
EnsemblFungi [example_ID YOR380W]
GeneID 854562
KEGG sce:YOR380W
CYGD YOR380w
SGD S000005907
eggNOG NOG71999
HOGENOM HOG000159128
InParanoid Q08904
OMA AFPHILG
OrthoDB EOG7CZKF9
BioCyc YEAST:G3O-33843-MONOMER
NextBio 976997
Proteomes UP000002311
Genevestigator Q08904
GO GO:0005634
GO:0003677
GO:0000981
GO:0003700
GO:0008270
GO:0009410
Gene3D 4.10.240.10
InterPro IPR007219
IPR001138
Pfam PF04082
PF00172
SMART SM00906
SM00066
SUPFAM SSF57701
PROSITE PS00463
PS50048

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

enables

GO:0043565

sequence-specific DNA binding

PMID:19111667[1]

ECO:0007005

high throughput direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0009410

response to xenobiotic stimulus

PMID:11882665[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:11882665[2]

ECO:0000305

curator inference used in manual assertion

GO:0003700

C

Seeded From UniProt

complete

enables

GO:0003700

DNA-binding transcription factor activity

PMID:11882665[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0009410

response to xenobiotic stimulus

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN002066809
SGD:S000005907

P

Seeded From UniProt

complete

enables

GO:0003700

DNA-binding transcription factor activity

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN002066809
SGD:S000005907

F

Seeded From UniProt

complete

involved_in

GO:0006357

regulation of transcription by RNA polymerase II

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0000981

P

Seeded From UniProt

complete

enables

GO:0000981

DNA-binding transcription factor activity, RNA polymerase II-specific

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001138
InterPro:IPR036864

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR007219

F

Seeded From UniProt

complete

enables

GO:0003700

DNA-binding transcription factor activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR040331

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001138
InterPro:IPR007219
InterPro:IPR036864

C

Seeded From UniProt

complete

involved_in

GO:0006351

transcription, DNA-templated

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR007219

P

Seeded From UniProt

complete

involved_in

GO:0006355

regulation of transcription, DNA-templated

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001138
InterPro:IPR036864

P

Seeded From UniProt

complete

enables

GO:0008270

zinc ion binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001138
InterPro:IPR007219
InterPro:IPR036864

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0238

F

Seeded From UniProt

complete

enables

GO:0046872

metal ion binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0479

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. Badis, G et al. (2008) A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Mol. Cell 32 878-87 PubMed GONUTS page
  2. 2.0 2.1 2.2 Hellauer, K et al. (2002) Zinc cluster protein Rdr1p is a transcriptional repressor of the PDR5 gene encoding a multidrug transporter. J. Biol. Chem. 277 17671-6 PubMed GONUTS page
  3. 3.0 3.1 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page