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YEAST:NHP10
Contents
| Species (Taxon ID) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast). (559292) | |
| Gene Name(s) | NHP10 (synonyms: HMO2) | |
| Protein Name(s) | Non-histone protein 10
High mobility group protein 2 | |
| External Links | ||
| UniProt | Q03435 | |
| EMBL | Z48008 BK006938 | |
| PIR | S50980 | |
| RefSeq | NP_010282.3 | |
| ProteinModelPortal | Q03435 | |
| SMR | Q03435 | |
| BioGrid | 32052 | |
| DIP | DIP-1387N | |
| IntAct | Q03435 | |
| MINT | MINT-388714 | |
| STRING | 4932.YDL002C | |
| MaxQB | Q03435 | |
| PaxDb | Q03435 | |
| PeptideAtlas | Q03435 | |
| EnsemblFungi | [example_ID YDL002C] | |
| GeneID | 851562 | |
| KEGG | sce:YDL002C | |
| CYGD | YDL002c | |
| SGD | S000002160 | |
| eggNOG | COG5648 | |
| HOGENOM | HOG000001026 | |
| InParanoid | Q03435 | |
| KO | K11680 | |
| OMA | AYLLFCE | |
| OrthoDB | EOG70KH25 | |
| BioCyc | YEAST:G3O-29433-MONOMER | |
| NextBio | 968998 | |
| Proteomes | UP000002311 | |
| Genevestigator | Q03435 | |
| GO | GO:0031011 GO:0045027 GO:0000404 GO:0006302 GO:0042766 GO:0006355 GO:0000722 GO:0006351 | |
| Gene3D | 1.10.30.10 | |
| InterPro | IPR009071 | |
| Pfam | PF00505 | |
| SMART | SM00398 | |
| SUPFAM | SSF47095 | |
| PROSITE | PS50118 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
part_of |
GO:0005634 |
nucleus |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0045027 |
DNA end binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0042766 |
nucleosome mobilization |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0031011 |
Ino80 complex |
ECO:0000353 |
physical interaction evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0031011 |
Ino80 complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006302 |
double-strand break repair |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
SGD:S000002217 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006302 |
double-strand break repair |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0000722 |
telomere maintenance via recombination |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
SGD:S000006657 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0000404 |
heteroduplex DNA loop binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0008301 |
DNA binding, bending |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0004362 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0008134 |
transcription factor binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0278608 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006357 |
regulation of transcription by RNA polymerase II |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0278608 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006338 |
chromatin remodeling |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000345179 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0000790 |
nuclear chromatin |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:96157 |
C |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Huh, WK et al. (2003) Global analysis of protein localization in budding yeast. Nature 425 686-91 PubMed GONUTS page
- ↑ 2.0 2.1 Ray, S & Grove, A (2009) The yeast high mobility group protein HMO2, a subunit of the chromatin-remodeling complex INO80, binds DNA ends. Nucleic Acids Res. 37 6389-99 PubMed GONUTS page
- ↑ 3.0 3.1 Shen, X et al. (2003) Involvement of actin-related proteins in ATP-dependent chromatin remodeling. Mol. Cell 12 147-55 PubMed GONUTS page
- ↑ Tosi, A et al. (2013) Structure and subunit topology of the INO80 chromatin remodeler and its nucleosome complex. Cell 154 1207-19 PubMed GONUTS page
- ↑ Morrison, AJ et al. (2004) INO80 and gamma-H2AX interaction links ATP-dependent chromatin remodeling to DNA damage repair. Cell 119 767-75 PubMed GONUTS page
- ↑ van Attikum, H et al. (2007) Distinct roles for SWR1 and INO80 chromatin remodeling complexes at chromosomal double-strand breaks. EMBO J. 26 4113-25 PubMed GONUTS page
- ↑ Hu, Y et al. (2013) Telomerase-null survivor screening identifies novel telomere recombination regulators. PLoS Genet. 9 e1003208 PubMed GONUTS page
- ↑ 8.0 8.1 8.2 8.3 8.4 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
