GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
YEAST:BDF1
Contents
| Species (Taxon ID) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast). (559292) | |
| Gene Name(s) | BDF1 | |
| Protein Name(s) | Bromodomain-containing factor 1 | |
| External Links | ||
| UniProt | P35817 | |
| EMBL | Z18944 U18116 U19729 L13469 BK006945 | |
| PIR | S55955 | |
| RefSeq | NP_013503.1 | |
| ProteinModelPortal | P35817 | |
| SMR | P35817 | |
| BioGrid | 31658 | |
| DIP | DIP-1624N | |
| IntAct | P35817 | |
| MINT | MINT-407031 | |
| STRING | 4932.YLR399C | |
| MaxQB | P35817 | |
| PaxDb | P35817 | |
| PeptideAtlas | P35817 | |
| PRIDE | P35817 | |
| EnsemblFungi | [example_ID YLR399C] | |
| GeneID | 851115 | |
| KEGG | sce:YLR399C | |
| CYGD | YLR399c | |
| SGD | S000004391 | |
| eggNOG | COG5076 | |
| GeneTree | ENSGT00760000119206 | |
| HOGENOM | HOG000248774 | |
| InParanoid | P35817 | |
| KO | K11684 | |
| OMA | VEMPRSA | |
| OrthoDB | EOG7Z69S1 | |
| BioCyc | YEAST:G3O-32463-MONOMER | |
| NextBio | 967833 | |
| PRO | PR:P35817 | |
| Proteomes | UP000002311 | |
| Genevestigator | P35817 | |
| GO | GO:0000790 GO:0000812 GO:0003682 GO:0001047 GO:0070577 GO:0001094 GO:0006338 GO:0006281 GO:0031452 GO:1900051 GO:0090054 GO:0031938 GO:0034401 GO:0009301 GO:0030435 | |
| Gene3D | 1.20.920.10 | |
| InterPro | IPR001487 IPR018359 IPR027353 | |
| Pfam | PF00439 | |
| PRINTS | PR00503 | |
| SMART | SM00297 | |
| SUPFAM | SSF47370 | |
| PROSITE | PS00633 PS50014 PS51525 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
involved_in |
GO:1900051 |
positive regulation of histone exchange |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0090054 |
regulation of chromatin silencing at silent mating-type cassette |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0070577 |
lysine-acetylated histone binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0070577 |
lysine-acetylated histone binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0031938 |
regulation of chromatin silencing at telomere |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0031452 |
negative regulation of heterochromatin assembly |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
SGD:S000002228 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0031452 |
negative regulation of heterochromatin assembly |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0009301 |
snRNA transcription |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006338 |
chromatin remodeling |
ECO:0000353 |
physical interaction evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006281 |
DNA repair |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003682 |
chromatin binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0001094 |
TFIID-class transcription factor complex binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
SGD:S000004840 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0001094 |
TFIID-class transcription factor complex binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0001047 |
core promoter binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0001047 |
core promoter binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0000812 |
Swr1 complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0000790 |
nuclear chromatin |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006974 |
cellular response to DNA damage stimulus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0030435 |
sporulation resulting in formation of a cellular spore |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006281 |
DNA repair |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Altaf, M et al. (2010) NuA4-dependent acetylation of nucleosomal histones H4 and H2A directly stimulates incorporation of H2A.Z by the SWR1 complex. J. Biol. Chem. 285 15966-77 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 Ladurner, AG et al. (2003) Bromodomains mediate an acetyl-histone encoded antisilencing function at heterochromatin boundaries. Mol. Cell 11 365-76 PubMed GONUTS page
- ↑ Matangkasombut, O & Buratowski, S (2003) Different sensitivities of bromodomain factors 1 and 2 to histone H4 acetylation. Mol. Cell 11 353-63 PubMed GONUTS page
- ↑ Zhang, Q et al. (2010) Biochemical profiling of histone binding selectivity of the yeast bromodomain family. PLoS ONE 5 e8903 PubMed GONUTS page
- ↑ 5.0 5.1 Raisner, RM et al. (2005) Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin. Cell 123 233-48 PubMed GONUTS page
- ↑ Lygerou, Z et al. (1994) The yeast BDF1 gene encodes a transcription factor involved in the expression of a broad class of genes including snRNAs. Nucleic Acids Res. 22 5332-40 PubMed GONUTS page
- ↑ Krogan, NJ et al. (2003) A Snf2 family ATPase complex required for recruitment of the histone H2A variant Htz1. Mol. Cell 12 1565-76 PubMed GONUTS page
- ↑ 8.0 8.1 Chua, P & Roeder, GS (1995) Bdf1, a yeast chromosomal protein required for sporulation. Mol. Cell. Biol. 15 3685-96 PubMed GONUTS page
- ↑ 9.0 9.1 Matangkasombut, O et al. (2000) Bromodomain factor 1 corresponds to a missing piece of yeast TFIID. Genes Dev. 14 951-62 PubMed GONUTS page
- ↑ Durant, M & Pugh, BF (2007) NuA4-directed chromatin transactions throughout the Saccharomyces cerevisiae genome. Mol. Cell. Biol. 27 5327-35 PubMed GONUTS page
- ↑ Wu, WH et al. (2009) N terminus of Swr1 binds to histone H2AZ and provides a platform for subunit assembly in the chromatin remodeling complex. J. Biol. Chem. 284 6200-7 PubMed GONUTS page
c
f
n
o
s
