User:Hmcarlson2

My Annotations

Status	Page	Date/Time	GO Term (Aspect)	Reference	Evidence	Notes	Links
unacceptable	MYCA9:B1MDG6	2013-09-15 14:50:07 CDT	GO:0044034 multi-organism biosynthetic process (P)	PMID:17978192	ECO:0000314 direct assay evidence used in manual assertion	Figure 3	challenge
unacceptable	MYCA9:B1MDG6	2013-09-15 14:57:39 CDT	GO:0044034 multi-organism biosynthetic process (P)	PMID:17978192	ECO:0000314 direct assay evidence used in manual assertion	Figure 4	challenge
unacceptable	MYCA9:B1MDG6	2013-09-15 14:57:39 CDT	GO:0044034 multi-organism biosynthetic process (P)	PMID:17978192	ECO:0000314 direct assay evidence used in manual assertion	Figure 2	challenge
unacceptable	MYCA9:B1MDG6	2013-09-15 14:57:39 CDT	GO:0044034 multi-organism biosynthetic process (P)	PMID:17978192	ECO:0000314 direct assay evidence used in manual assertion	Figure 5	challenge
unacceptable	9CRUS:K7WBL1	2013-09-26 21:35:16 CDT	GO:0004842 ubiquitin-protein ligase activity (F)	PMID:23511337	ECO:0000316 genetic interaction evidence used in manual assertion	The article does an analysis on the regulatory pathway of ubiquitin-protein ligase, which has important roles in protein degradation.	challenge
requireschanges	9CRUS:K7WBL1	2013-09-26 21:35:17 CDT	GO:0004842 ubiquitin-protein ligase activity (F)	PMID:23511337	ECO:0000255 match to sequence model evidence used in manual assertion	Figure 1: From sequence analysis of As-UBPL and complete cDNA sequence and deduce protein sequence.	challenge
acceptable	9CRUS:K7WBL1	2013-09-26 21:35:17 CDT	GO:0051438 regulation of ubiquitin-protein ligase activity (P)	PMID:23511337	ECO:0000314 direct assay evidence used in manual assertion	Figure 7: A PCR analysis of As-UBPL expression in salinity challenge assay.	challenge
unacceptable	9CRUS:K7WBL1	2013-09-26 21:35:17 CDT	GO:0051483 terpenoid biosynthetic process, mevalonate-independent (P)	PMID:23511337	ECO:0000314 direct assay evidence used in manual assertion	Figure 8: Quantitative PCR analysis of As-UBPL expression in temperature challenge assay.	challenge
requireschanges	PROMN:A3E4D1	2013-10-13 15:47:03 CDT	GO:0006950 response to stress (P)	PMID:22726425	ECO:0000315 mutant phenotype evidence used in manual assertion	Figure 7: PmHsp70 response to different concentrations of copper and effect on the ability of expression.	challenge
requireschanges	PROMN:A3E4D1	2013-10-13 15:47:03 CDT	GO:0006950 response to stress (P)	PMID:22726425	ECO:0000315 mutant phenotype evidence used in manual assertion	Figure 6: PmHsp70 response under treatment of BPA and the effect it has on the ability of expression.	challenge
unacceptable	CAVPO:H0VCS5	2013-10-27 17:55:38 CDT	GO:2000307 regulation of tumor necrosis factor (ligand) superfamily member 11 production (P)	PMID:23732292	ECO:0000255 match to sequence model evidence used in manual assertion	Figure 2A: nucleotide and deduced amino acid sequences of gpHVEM gene.	challenge
requireschanges	CAVPO:H0VCS5	2013-10-27 17:55:39 CDT	GO:2000307 regulation of tumor necrosis factor (ligand) superfamily member 11 production (P)	PMID:23732292	ECO:0000247 sequence alignment evidence used in manual assertion	Figure 2B: Genomic organization of the HVEM gene in guinea pig, human and mouse.	challenge
unacceptable	CAVPO:H0VCS5	2013-10-27 17:55:39 CDT	GO:2000307 regulation of tumor necrosis factor (ligand) superfamily member 11 production (P)	PMID:23732292	ECO:0000247 sequence alignment evidence used in manual assertion	Figure 2C: Amino acid sequence of HVEM for guinea pig, human, mouse, and dog.	challenge

acceptable:1
unacceptable:8
requires_changes:4
flagged:0

Annotations challenged by Hmcarlson2

Status	Author,Group	Page	GO Term (Aspect)	Reference	Evidence	Links	Page history
updatedbyinstructor	Meganmikkelson, Team Don't be anno-hating	HUMAN:AL3A1	GO:0018479 - benzaldehyde dehydrogenase (NAD+) activity (F)	PMID:4015840	ECO:0000314 direct assay evidence used in manual assertion	challenge	C: 1 fixed by Hmcarlson2

1 annotations fixed by Hmcarlson2

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