TUMVJ:POLG

Species (Taxon ID)	Turnip mosaic virus (strain Japanese) (TuMV). (12230)
Gene Name(s)	No Information Provided.
Protein Name(s)	Genome polyprotein P1 proteinase N-terminal protein Helper component proteinase HC-pro Protein P3 6 kDa protein 1 6K1 Cytoplasmic inclusion protein CI 6 kDa protein 2 6K2 Viral genome-linked protein VPg Nuclear inclusion protein A NI-a NIa 49 kDa proteinase 49 kDa-Pro NIa-pro Nuclear inclusion protein B NI-b NIb RNA-directed RNA polymerase Capsid protein CP Coat protein
External Links
UniProt	P89509
EMBL	D83184
PDB	3RNV
PDBsum	3RNV
ProteinModelPortal	P89509
SMR	P89509
OrthoDB	VOG0900003L
Proteomes	UP000008262
GO	GO:0019029 GO:0005524 GO:0004197 GO:0004386 GO:0003723 GO:0003968 GO:0005198 GO:0018144 GO:0006351 GO:0039694
CDD	cd00079
InterPro	IPR011545 IPR001456 IPR031159 IPR014001 IPR001650 IPR027417 IPR002540 IPR009003 IPR001592 IPR001730 IPR013648 IPR001205 IPR007094
Pfam	PF00270 PF00271 PF00863 PF00851 PF01577 PF00767 PF08440 PF00680
PRINTS	PR00966
SMART	SM00487 SM00490
SUPFAM	SSF50494 SSF52540
PROSITE	PS51744 PS51192 PS51194 PS51436 PS50507

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Extension	Notes	Status
	GO:0009405	pathogenesis	PMID:28735115	ECO:0000315			P		organism: Turnip mosaic virus Protein is P3 in the paper. P3 in polyprotein POLG (Uniprot)."TuMV-GFP showed typical mosaic and leaf curling symptoms in upper new leaves, while the corresponding leaves in those inoculated by TuMV-GFP(∆GDD) and TuMV-GFP(∆P3C) did not display any symptoms (Fig. 2B)." Host: N. benthamiana	complete CACAO 13046
	GO:0039690	positive stranded viral RNA replication	PMID:28735115	ECO:0000315			P		The organism is Turnip mosaic virus and the protein is P3 in the paper. P3 in polyprotein POLG (Uniprot). Fig 3 shows that the delta P3 is deficient in positive stranded RNA viral replication after 24 hours compared to the wild type virus "The P3C deletion mutant showed slightly higher levels of (+) and (−) viral RNAs than the replication-defective mutant TuMV-GFP(∆GDD) at both time points (Fig. 3) with a significant difference (P<0.05) only found between the (+) viral RNA levels of the P3C deletion"	complete CACAO 13047
involved_in	GO:0001172	transcription, RNA-templated	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0003968	P		Seeded From UniProt	complete
involved_in	GO:0001172	transcription, RNA-templated	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0003968	P		Seeded From UniProt	complete
involved_in	GO:0001172	transcription, RNA-templated	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0003968	P		Seeded From UniProt	complete
enables	GO:0003676	nucleic acid binding	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR011545	F		Seeded From UniProt	complete
enables	GO:0003723	RNA binding	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR001205	F		Seeded From UniProt	complete
enables	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR001205 InterPro:IPR007094 InterPro:IPR013648	F		Seeded From UniProt	complete
enables	GO:0004197	cysteine-type endopeptidase activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR001456 InterPro:IPR002540	F		Seeded From UniProt	complete
enables	GO:0005198	structural molecule activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR013648	F		Seeded From UniProt	complete
enables	GO:0005524	ATP binding	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR011545	F		Seeded From UniProt	complete
involved_in	GO:0006351	transcription, DNA-templated	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR001205	P		Seeded From UniProt	complete
involved_in	GO:0006508	proteolysis	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR001456 InterPro:IPR001730 InterPro:IPR002540	P		Seeded From UniProt	complete
enables	GO:0008234	cysteine-type peptidase activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR001730	F		Seeded From UniProt	complete
enables	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR013648	F		Seeded From UniProt	complete
involved_in	GO:0018144	RNA-protein covalent cross-linking	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR013648	P		Seeded From UniProt	complete
part_of	GO:0019028	viral capsid	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR001592	C		Seeded From UniProt	complete
involved_in	GO:0039694	viral RNA genome replication	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR007094	P		Seeded From UniProt	complete
enables	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	GO_REF:0000003	ECO:0000501	evidence used in automatic assertion	EC:2.7.7.48	F		Seeded From UniProt	complete
enables	GO:0016779	nucleotidyltransferase activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0548	F		Seeded From UniProt	complete
part_of	GO:0019029	helical viral capsid	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-1139	C		Seeded From UniProt	complete
enables	GO:0004386	helicase activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0347	F		Seeded From UniProt	complete
enables	GO:0008236	serine-type peptidase activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0720	F		Seeded From UniProt	complete
enables	GO:0008233	peptidase activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0645	F		Seeded From UniProt	complete
involved_in	GO:0006508	proteolysis	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0645	P		Seeded From UniProt	complete
enables	GO:0005524	ATP binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0067	F		Seeded From UniProt	complete
enables	GO:0008234	cysteine-type peptidase activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0788	F		Seeded From UniProt	complete
part_of	GO:0019012	virion	GO_REF:0000037 GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0946 UniProtKB-SubCell:SL-0274	C		Seeded From UniProt	complete
enables	GO:0000166	nucleotide binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0547	F		Seeded From UniProt	complete
enables	GO:0016787	hydrolase activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0378	F		Seeded From UniProt	complete
part_of	GO:0019028	viral capsid	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0167	C		Seeded From UniProt	complete
enables	GO:0016740	transferase activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0808	F		Seeded From UniProt	complete
enables	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0696	F		Seeded From UniProt	complete
involved_in	GO:0018144	RNA-protein covalent cross-linking	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0191	P		Seeded From UniProt	complete
edit table

References

See Help:References for how to manage references in GONUTS.