GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
Cacao
| Contributes to | GO:0019564 | aerobic glycerol catabolic process | PMID:25220241 | ECO:0005510 IMP: Inferred from Mutant Phenotype | Biological Process | Experiment on Yersinia pestis, figure 4, that replaced glpD in genome with defective glpD' allele. Bacteria was grown in HIB media to the logarithmic phase in which intracellular concentrations of glycerol-3-phosphate were measured to show significant increase in glycerol-3-phosphate in normal type cells compared to deletion cells. | complete | |
| This annotation made on page: YERPE:Q93NB6 By: GFurletti (group Team Green A 2019) on 2019-03-08 15:43:31 CST. | ||||||||
You must be logged in to challenge this annotation.
| Entry Type | Challenging User,Group | Time/Date | Challenge Reason | Points/Assessment | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Private Assessment | JimHu | 2019-06-06 16:01:57 CDT | You need to be an instructor to view these notes. | Updated by Instructor ✔ Protein ✔ Publication ✔ Qualifier ✔ Go term ✔ Evidence ✔ With/From ✔ Notes ✔ Unique/Original | ||||||||||||||||||||||
| Private Assessment | JimHu | 2019-06-06 16:00:06 CDT | You need to be an instructor to view these notes. | Requires Changes ✔ Protein ✔ Publication ✗ Qualifier ✔ Go term ✔ Evidence ✔ With/From ✔ Notes ✔ Unique/Original | ||||||||||||||||||||||
| Public Assessment | Ivanerill | 2019-04-08 17:30:39 CDT | No notes given. | Acceptable ✔ Protein ✔ Publication ✔ Qualifier ✔ Go term ✔ Evidence ✔ With/From ✔ Notes ✔ Unique/Original | ||||||||||||||||||||||
| Public Assessment | DanielRenfro | 2019-04-03 09:21:10 CDT | This annotation has been flagged because it has been edited since last assessment
| Flagged | ||||||||||||||||||||||
| Public Assessment | Ivanerill | 2019-03-25 12:21:41 CDT | Please rewrite notes; they can certainly be made much more clear. All the "undergoing" makes thing confusing. The evidence is not correct; the authors are not just knocking out a gene, they are doing more than that to prove the point. Please justify that this is "non-glycolytic fermentation" | Requires Changes ✔ Protein ✔ Publication ✔ Qualifier ✗ Go term ✗ Evidence ✔ With/From ✗ Notes ✔ Unique/Original | ||||||||||||||||||||||
| Public Assessment | DanielRenfro | 2019-03-24 19:31:26 CDT | This annotation has been flagged because it has been edited since last assessment
| Flagged | ||||||||||||||||||||||
| Public Assessment | Ivanerill | 2019-03-13 09:13:58 CDT | Evidence could certainly be more specific. I don't see how figure 4 shows that glpD directly participates in glycerol catabolism. It could be regulating it, or regulating something that regulates it, or changing the synthesis rate for all we know. Notes are OK (to the point and well explained), it just looks like the interpretation is wrong. Reassess GO and ECO terms and justify them. Please use the cross-linked evidence terms from ECO (i.e. those that end in "used in manual assertion" or "used in automatic assertion" Most instances of evidence you will come across will be of type "used in manual assertion". Terms with "used in automatic assertion" imply that the authors did not make a conscious effort to analyze the results of an experiment, letting an algorithm make the call. For instance, if somebody were to use BLAST to determine that a bunch of proteins are homologous (and hence have the same function as the query) and they do not assess the BLAST results in any way (just accept whatever BLAST returns as significant given a preestablished threshold) that could be thought of as an "automatic assertion".
| Requires Changes ✔ Protein ✔ Publication ✔ Qualifier ✗ Go term ✗ Evidence ✔ With/From ✗ Notes ✔ Unique/Original | ||||||||||||||||||||||
| Private Assessment | Ivanerill | 2019-03-09 16:23:58 CST | You need to be an instructor to view these notes. | Requires Changes ✔ Protein ✔ Publication ✔ Qualifier ✗ Go term ✗ Evidence ✗ Notes ✔ Unique/Original |
